Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0026570 | OGI:05075830 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:29098210-29103732 | ||||||||
| Gene Symbol | OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154, OsETTIN1 | ||||||||||
| DNA seq | ttccccctcattcatggccattaccacgatgtgtcaccccaccccaccaccgcccgctgctccacttctcctcctcctcctcctcctctcctagtagtagcaacctacggacaccacccccacccgcttcatttatcacttgtctccccctctccctcgcctgctccgctgctctcgtgcttcgcgcctcgcctgacctcgctgtcgctgccgccagccatgaccgggatcgacctcaacaccgtcgaggaggacgaggaggaggcggcggaggaggtggcggcgaacggctcgtctccggctccggcgagggcgggcgcggtgtgcctcgagctgtggcacgcctgcgccgggcccgtggcgccgctgccgaggaaagggggcgtcgtcgtgtacctgccgcaggggcatctcgagcacctcggcgacgcgcccgcggcggcggcggccgcggccgccgtgccgccgcacgtcttctgccgcgtcgtcgacgtcaccctcctcgtgcgtcccttctcaatgctcgtatcgtacgtgttctcgtcttcacggcggcgcgaggggattgattggcTttgtgttcttctctgcaggcggacgcggcgaccgacgagGTgtacgcgcagctctcgcttgtcccggagaaggaggtgcgcgcccgcctgcgcgaagcagttggagcatttggtttgatgattccgttttgttttttttttttttGttttttggcctgagttttcttctcttctcttccggggattgaaggaggtggcgaggcgggcggacgacggcgagggcgaggacggggacggcatgaagcagcggttcgcgcggatgccgcacatgttctgcaagacgctcacggcgtccgacaccagcacgcacggcggcttctctgtgccgcgccgcgccgccgaggactgcttccctccactggtcggtgtatattggagaaagaaaaaGaaaagcttccttttttgaagtaaagaatttatcttttttttgggggtttgtttagctgatgaaatccttcggattgggaaccttgcaggattacagccagcagcggccgtcgcaggagcttgttgccaaggatttgcacggcactgaatggaggttccgccatatttaccgaggtagagcagaaagaaaacatggactttgagaacaagtttttttttttttaacctgttttgatgactgagatgctctacgcagctgtgccatgcatacattccatcttcattaggcttctgtactgtgcatgcacttcccctggctggaagcctctgcgtcctgaatgattcaatggggattgaatattagtactggatttgtgctttagttgtttctgacgaccagcgcgtcttgttcagatagagcagtaatagcttgtgaatacacacatgcatcaaccgagctcaccgagaacttgcactttgcggttatgatcgacatctgtactttttgcatatccacctgttttatgatgctaaatcatgactgggctgacatgATatgatTAgtgtatgcaatgtgttgattctccaaacactctaatatgtgttggctaggctacattatgtttctccatagctccgacattgttagttaatcaatcatgtttaactgtattttacattttttcttctttcttaaaaacctttgtattgtaatgtctggtcccttcttgaggattgcaaaggacaaacataacaagttaagtggtccttgatttctgatagatctacatctgaatatgctacaggccagccacgtcggcaccttttaaccacaggttggagtgcatttgttaacaagaagaagcttgtttctggggatgccgtactatttttgcggtaggccactcgatcattcagataattatcacatgttgacgatcttttctaaagattcttgatcaatctgcagaggtgatgatggggagctaagactgggagttcgccgtgcagctcagcttaaaaatgggtctgcTtttccagcgctttacaaccagtgttctaatcttggtacacttgccaatgttgcacatgcagtggctacagAaagtgtgttcaacatatactacaatcccaggtaatgaagaacctcgagttattttgttaatgctcccgacagctgatgttctagaactttcttgctgttggctggtggcagccttaaattgtgcccattatttactgcttgtttgagctatttgttGATAgtcatacattatgccagctcagcatgtgcaatcacatggttttatctggttgcatttgtagtcttgctgaaatttgaagttaggcgctgttgcaatagcttggaaagttgtatttgtaggttgtaactgttctttttaaaacaaaagattatatgaacagaatcaatagtctcgtttcatatatttatcaatgtagtcgttttgcaTttgatgctttacagagctagcgcctacttctgttcttgcaacaaaacagtgtcttatttcaaagctctcttctgaaatattgacaggttaagtcagtccgaattcattgtaccctactggaagttcatgaaaagcctcagccaaccattttctgttgggctgaggttcaaaatgagatatgaaagtgaagatgctagtgaaagaaggtagatggacaatagttctacacttgtactagaatggactgaactgcattctagattggtgatgcatatgtgataacttataattttacaggtacaccgggataattactggaagtggtgatacagaccctatgtggcatggttcgaaatggaaatgtttgttggtaaactaccctatctcttgtgcctcgtaatatatgtttatgggcatctgctgtgtattcaattaacattttttttttgtagtgttgctgccatttcactaattaaacccttgttttttcctagtgccgcgtggcatttgcatcatgtggccatcttgacttgtttgtttggattatattttACttataacaagaatttgatgctaatcttggttcacaaatttgctagcatggaacccattcactctattaactgatgtagcagttgagctttagtttacatattactaaaacacagtttagttgtcttgatgcattttgtttcttatccaaactcaagtcagatagtagtgatttttcatgaactcaatctggaaaggaacaggttttcagataattgagcactgcggtactattacacaatgtcagcttacatggttatgttttcagagtgacagttgcactgactagcaagtttggttgctcacaataacagtcttagatttgaagacatcagttaatcttcctggtttgttttcaaaagtggtaatcttaacttgccatttgacttccactagtagtttttgtagctagtctagagctgtgttctacactcagcctggtttcttcagcgaaatattaggtggatgaagttatggacactgctagcttgatcttcttttgaaattttaccttccaggagtacttaggcatgtgaaagtttttagactatggctctcctgagttaaaatttcaaTttttgagcacataattctgttctcatggccacaCcataagtcccgtacaagccattattgcaatcagatcctctttatgaCcatatgtatatgatttatcgacctatgtctaccttggtaggtgaggtgggatgacgAcgctgagttccgtcgaccaaacagggtctctccttgggagatTGAGCtgactagttcagtgtcaggatcccaTttgtccacaCcccattcaaagcgattgaaaccatgtcttccccatgttaatccagaatacatggttccacgtatgtcTttcttctagctattaccagttaataggatggttctgttggatgcactgtgccgatttaatttatccttttgtcaggtggaggtggttgtcctgattttgcggaatctgcccaattccacaaggtcttgcaaggtcaagaattattgggttttaaatctcatggtggtactgctgctgctacttctcagccatgtgaagcaaggcatttacagtacaTtgatgagcggagttgctccagcgatgcgagtaacagtatcctaggggttccaagacttggtgatagagcaccacttggaaacccaggattttCctaccattgctcaggctttGgggagtctcagagactccaaaaggtcttgcaaggtcaagaattatttcgtccctaccgaggaactttggttgatgcgtctatgggtagtaatgggtttcatcaacaagatagtcctcgtgcaccaggtgtggtgaataaaTggcaggcacaacttcatggccgtgctgcTtttcatggaccgccagcactggctcttccatctcaatcatcatctccgccatctgtcctaatgtttcagcaagctaattcaaagatgcccaggttggagtttgggcatggacagttggacaagcacgagaatgataggcgtgttaggtttggtccttctgaaggaattgaaagaagagagcaaagaataccactccagccttatcctacttctggagaagtgatagatggacaggttacagttgagaagtctcactcccctggtcgacatggaaaggatggtccagataacaaagctgttggcacaaatagttgcaaaatatttggcatctctttgactgagaaggttccagcaagagaagaactagatgatggcgacgccaactattcactccagtctttgaagcaagtgccaaaatccctgggcaatagttgtgctaccgtgagtgttttatgatgagtaattttcatgcactcagtaatgtaaactgctttttaactaaaagctctgcaggttcatgagcaaaggcctgttgTtggcagggtgattgatatttcaactatggatatgatgatctgatctatgagctggatttgcaaaattatctggaggtgaagtaacactaggattgcttccaaccacatgttagtgatactccaaaggcataaaatcctcacctgtgacagttttacctagaaatgttatgatcattgttttgccgttgttccagattttgctgtggatctccagatggtggccgagtatcagggagatggagggactgatgattctgatatttttatcttagatgtaggcgttggagcacttatcatgtgacatagtacctagctgctcgtctgcatttgttgcctctgcaactttaactgtcagcggcatttgtcgccgctggaaCcatctaagtacgtgtttataagctgtaagctatgacaagcgcattagagggtgctggtactgttagaacattaattaatgtcagtagcatgctttgatcttacgtgatgcttttcctatgttgaccggagttcagtataacatgatggtggctttgggagacctcatgttttgaaaccttggtgctgatcgcTgattTGTAAgtAtaaatttagttgtatttctaCcacttagcttattaatttatcatcgtttccatc
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| CDS seq | atgaccgggatcgacctcaacaccgtcgaggaggacgaggaggaggcggcggaggaggtggcggcgaacggctcgtctccggctccggcgagggcgggcgcggtgtgcctcgagctgtggcacgcctgcgccgggcccgtggcgccgctgccgaggaaagggggcgtcgtcgtgtacctgccgcaggggcatctcgagcacctcggcgacgcgcccgcggcggcggcggccgcggccgccgtgccgccgcacgtcttctgccgcgtcgtcgacgtcaccctcctcgcggacgcggcgaccgacgagGTgtacgcgcagctctcgcttgtcccggagaaggaggaggtggcgaggcgggcggacgacggcgagggcgaggacggggacggcatgaagcagcggttcgcgcggatgccgcacatgttctgcaagacgctcacggcgtccgacaccagcacgcacggcggcttctctgtgccgcgccgcgccgccgaggactgcttccctccactggattacagccagcagcggccgtcgcaggagcttgttgccaaggatttgcacggcactgaatggaggttccgccatatttaccgaggccagccacgtcggcaccttttaaccacaggttggagtgcatttgttaacaagaagaagcttgtttctggggatgccgtactatttttgcgaggtgatgatggggagctaagactgggagttcgccgtgcagctcagcttaaaaatgggtctgcTtttccagcgctttacaaccagtgttctaatcttggtacacttgccaatgttgcacatgcagtggctacagAaagtgtgttcaacatatactacaatcccaggttaagtcagtccgaattcattgtaccctactggaagttcatgaaaagcctcagccaaccattttctgttgggctgaggttcaaaatgagatatgaaagtgaagatgctagtgaaagaaggtacaccgggataattactggaagtggtgatacagaccctatgtggcatggttcgaaatggaaatgtttgttggtgaggtgggatgacgAcgctgagttccgtcgaccaaacagggtctctccttgggagatTGAGCtgactagttcagtgtcaggatcccaTttgtccacaCcccattcaaagcgattgaaaccatgtcttccccatgttaatccagaatacatggttccacgtggaggtggttgtcctgattttgcggaatctgcccaattccacaaggtcttgcaaggtcaagaattattgggttttaaatctcatggtggtactgctgctgctacttctcagccatgtgaagcaaggcatttacagtacaTtgatgagcggagttgctccagcgatgcgagtaacagtatcctaggggttccaagacttggtgatagagcaccacttggaaacccaggattttCctaccattgctcaggctttGgggagtctcagagactccaaaaggtcttgcaaggtcaagaattatttcgtccctaccgaggaactttggttgatgcgtctatgggtagtaatgggtttcatcaacaagatagtcctcgtgcaccaggtgtggtgaataaaTggcaggcacaacttcatggccgtgctgcTtttcatggaccgccagcactggctcttccatctcaatcatcatctccgccatctgtcctaatgtttcagcaagctaattcaaagatgcccaggttggagtttgggcatggacagttggacaagcacgagaatgataggcgtgttaggtttggtccttctgaaggaattgaaagaagagagcaaagaataccactccagccttatcctacttctggagaagtgatagatggacaggttacagttgagaagtctcactcccctggtcgacatggaaaggatggtccagataacaaagctgttggcacaaatagttgcaaaatatttggcatctctttgactgagaaggttccagcaagagaagaactagatgatggcgacgccaactattcactccagtctttgaagcaagtgccaaaatccctgggcaatagttgtgctaccgttcatgagcaaaggcctgttgTtggcagggtgattgatatttcaactatggatatgatgatctga
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| Protein seq | MTGIDLNTVEEDEEEAAEEVAANGSSPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESEDASERRYTGIITGSGDTDPMWHGSKWKCLLVRWDDDAEFRRPNRVSPWEIELTSSVSGSHLSTPHSKRLKPCLPHVNPEYMVPRGGGCPDFAESAQFHKVLQGQELLGFKSHGGTAAATSQPCEARHLQYIDERSCSSDASNSILGVPRLGDRAPLGNPGFSYHCSGFGESQRLQKVLQGQELFRPYRGTLVDASMGSNGFHQQDSPRAPGVVNKWQAQLHGRAAFHGPPALALPSQSSSPPSVLMFQQANSKMPRLEFGHGQLDKHENDRRVRFGPSEGIERREQRIPLQPYPTSGEVIDGQVTVEKSHSPGRHGKDGPDNKAVGTNSCKIFGISLTEKVPAREELDDGDANYSLQSLKQVPKSLGNSCATVHEQRPVVGRVIDISTMDMMI |
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| Function | Auxin response factor 15 [UniProtKB/Swiss-Prot:Q8S985] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026570 | OsLima_05g0026570.03 | Chr05 | 29098210 | 29103732 | + | NAM | ||
| CDS seq | atgaccgggatcgacctcaacaccgtcgaggaggacgaggaggaggcggcggaggaggtggcggcgaacggctcgtctccggctccggcgagggcgggcgcggtgtgcctcgagctgtggcacgcctgcgccgggcccgtggcgccgctgccgaggaaagggggcgtcgtcgtgtacctgccgcaggggcatctcgagcacctcggcgacgcgcccgcggcggcggcggccgcggccgccgtgccgccgcacgtcttctgccgcgtcgtcgacgtcaccctcctcgcggacgcggcgaccgacgagGTgtacgcgcagctctcgcttgtcccggagaaggaggaggtggcgaggcgggcggacgacggcgagggcgaggacggggacggcatgaagcagcggttcgcgcggatgccgcacatgttctgcaagacgctcacggcgtccgacaccagcacgcacggcggcttctctgtgccgcgccgcgccgccgaggactgcttccctccactggattacagccagcagcggccgtcgcaggagcttgttgccaaggatttgcacggcactgaatggaggttccgccatatttaccgaggccagccacgtcggcaccttttaaccacaggttggagtgcatttgttaacaagaagaagcttgtttctggggatgccgtactatttttgcgaggtgatgatggggagctaagactgggagttcgccgtgcagctcagcttaaaaatgggtctgcTtttccagcgctttacaaccagtgttctaatcttggtacacttgccaatgttgcacatgcagtggctacagAaagtgtgttcaacatatactacaatcccaggttaagtcagtccgaattcattgtaccctactggaagttcatgaaaagcctcagccaaccattttctgttgggctgaggttcaaaatgagatatgaaagtgaagatgctagtgaaagaaggtacaccgggataattactggaagtggtgatacagaccctatgtggcatggttcgaaatggaaatgtttgttggtgaggtgggatgacgAcgctgagttccgtcgaccaaacagggtctctccttgggagatTGAGCtgactagttcagtgtcaggatcccaTttgtccacaCcccattcaaagcgattgaaaccatgtcttccccatgttaatccagaatacatggttccacgtggaggtggttgtcctgattttgcggaatctgcccaattccacaaggtcttgcaaggtcaagaattattgggttttaaatctcatggtggtactgctgctgctacttctcagccatgtgaagcaaggcatttacagtacaTtgatgagcggagttgctccagcgatgcgagtaacagtatcctaggggttccaagacttggtgatagagcaccacttggaaacccaggattttCctaccattgctcaggctttGgggagtctcagagactccaaaaggtcttgcaaggtcaagaattatttcgtccctaccgaggaactttggttgatgcgtctatgggtagtaatgggtttcatcaacaagatagtcctcgtgcaccaggtgtggtgaataaaTggcaggcacaacttcatggccgtgctgcTtttcatggaccgccagcactggctcttccatctcaatcatcatctccgccatctgtcctaatgtttcagcaagctaattcaaagatgcccaggttggagtttgggcatggacagttggacaagcacgagaatgataggcgtgttaggtttggtccttctgaaggaattgaaagaagagagcaaagaataccactccagccttatcctacttctggagaagtgatagatggacaggttacagttgagaagtctcactcccctggtcgacatggaaaggatggtccagataacaaagctgttggcacaaatagttgcaaaatatttggcatctctttgactgagaaggttccagcaagagaagaactagatgatggcgacgccaactattcactccagtctttgaagcaagtgccaaaatccctgggcaatagttgtgctaccgttcatgagcaaaggcctgttgTtggcagggtgattgatatttcaactatggatatgatgatctga
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| Protein seq | MTGIDLNTVEEDEEEAAEEVAANGSSPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESEDASERRYTGIITGSGDTDPMWHGSKWKCLLVRWDDDAEFRRPNRVSPWEIELTSSVSGSHLSTPHSKRLKPCLPHVNPEYMVPRGGGCPDFAESAQFHKVLQGQELLGFKSHGGTAAATSQPCEARHLQYIDERSCSSDASNSILGVPRLGDRAPLGNPGFSYHCSGFGESQRLQKVLQGQELFRPYRGTLVDASMGSNGFHQQDSPRAPGVVNKWQAQLHGRAAFHGPPALALPSQSSSPPSVLMFQQANSKMPRLEFGHGQLDKHENDRRVRFGPSEGIERREQRIPLQPYPTSGEVIDGQVTVEKSHSPGRHGKDGPDNKAVGTNSCKIFGISLTEKVPAREELDDGDANYSLQSLKQVPKSLGNSCATVHEQRPVVGRVIDISTMDMMI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026570 | OsLima_05g0026570.01 | Chr05 | 29098210 | 29103732 | + | NAM | ||
| CDS seq | atgaccgggatcgacctcaacaccgtcgaggaggacgaggaggaggcggcggaggaggtggcggcgaacggctcgtctccggctccggcgagggcgggcgcggtgtgcctcgagctgtggcacgcctgcgccgggcccgtggcgccgctgccgaggaaagggggcgtcgtcgtgtacctgccgcaggggcatctcgagcacctcggcgacgcgcccgcggcggcggcggccgcggccgccgtgccgccgcacgtcttctgccgcgtcgtcgacgtcaccctcctcgcggacgcggcgaccgacgagGTgtacgcgcagctctcgcttgtcccggagaaggaggaggtggcgaggcgggcggacgacggcgagggcgaggacggggacggcatgaagcagcggttcgcgcggatgccgcacatgttctgcaagacgctcacggcgtccgacaccagcacgcacggcggcttctctgtgccgcgccgcgccgccgaggactgcttccctccactggattacagccagcagcggccgtcgcaggagcttgttgccaaggatttgcacggcactgaatggaggttccgccatatttaccgaggccagccacgtcggcaccttttaaccacaggttggagtgcatttgttaacaagaagaagcttgtttctggggatgccgtactatttttgcgaggtgatgatggggagctaagactgggagttcgccgtgcagctcagcttaaaaatgggtctgcTtttccagcgctttacaaccagtgttctaatcttggtacacttgccaatgttgcacatgcagtggctacagAaagtgtgttcaacatatactacaatcccaggttaagtcagtccgaattcattgtaccctactggaagttcatgaaaagcctcagccaaccattttctgttgggctgaggttcaaaatgagatatgaaagtgaagatgctagtgaaagaaggtacaccgggataattactggaagtggtgatacagaccctatgtggcatggttcgaaatggaaatgtttgttggtgaggtgggatgacgAcgctgagttccgtcgaccaaacagggtctctccttgggagatTGAGCtgactagttcagtgtcaggatcccaTttgtccacaCcccattcaaagcgattgaaaccatgtcttccccatgttaatccagaatacatggttccacgtggaggtggttgtcctgattttgcggaatctgcccaattccacaaggtcttgcaaggtcaagaattattgggttttaaatctcatggtggtactgctgctgctacttctcagccatgtgaagcaaggcatttacagtacaTtgatgagcggagttgctccagcgatgcgagtaacagtatcctaggggttccaagacttggtgatagagcaccacttggaaacccaggattttCctaccattgctcaggctttGgggagtctcagagactccaaaaggtcttgcaaggtcaagaattatttcgtccctaccgaggaactttggttgatgcgtctatgggtagtaatgggtttcatcaacaagatagtcctcgtgcaccaggtgtggtgaataaaTggcaggcacaacttcatggccgtgctgcTtttcatggaccgccagcactggctcttccatctcaatcatcatctccgccatctgtcctaatgtttcagcaagctaattcaaagatgcccaggttggagtttgggcatggacagttggacaagcacgagaatgataggcgtgttaggtttggtccttctgaaggaattgaaagaagagagcaaagaataccactccagccttatcctacttctggagaagtgatagatggacaggttacagttgagaagtctcactcccctggtcgacatggaaaggatggtccagataacaaagctgttggcacaaatagttgcaaaatatttggcatctctttgactgagaaggttccagcaagagaagaactagatgatggcgacgccaactattcactccagtctttgaagcaagtgccaaaatccctgggcaatagttgtgctaccggtgattga
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| Protein seq | MTGIDLNTVEEDEEEAAEEVAANGSSPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESEDASERRYTGIITGSGDTDPMWHGSKWKCLLVRWDDDAEFRRPNRVSPWEIELTSSVSGSHLSTPHSKRLKPCLPHVNPEYMVPRGGGCPDFAESAQFHKVLQGQELLGFKSHGGTAAATSQPCEARHLQYIDERSCSSDASNSILGVPRLGDRAPLGNPGFSYHCSGFGESQRLQKVLQGQELFRPYRGTLVDASMGSNGFHQQDSPRAPGVVNKWQAQLHGRAAFHGPPALALPSQSSSPPSVLMFQQANSKMPRLEFGHGQLDKHENDRRVRFGPSEGIERREQRIPLQPYPTSGEVIDGQVTVEKSHSPGRHGKDGPDNKAVGTNSCKIFGISLTEKVPAREELDDGDANYSLQSLKQVPKSLGNSCATGD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026570 | OsLima_05g0026570.04 | Chr05 | 29098210 | 29103732 | + | NAM | ||
| CDS seq | atgaccgggatcgacctcaacaccgtcgaggaggacgaggaggaggcggcggaggaggtggcggcgaacggctcgtctccggctccggcgagggcgggcgcggtgtgcctcgagctgtggcacgcctgcgccgggcccgtggcgccgctgccgaggaaagggggcgtcgtcgtgtacctgccgcaggggcatctcgagcacctcggcgacgcgcccgcggcggcggcggccgcggccgccgtgccgccgcacgtcttctgccgcgtcgtcgacgtcaccctcctcgcggacgcggcgaccgacgagGTgtacgcgcagctctcgcttgtcccggagaaggaggaggtggcgaggcgggcggacgacggcgagggcgaggacggggacggcatgaagcagcggttcgcgcggatgccgcacatgttctgcaagacgctcacggcgtccgacaccagcacgcacggcggcttctctgtgccgcgccgcgccgccgaggactgcttccctccactggattacagccagcagcggccgtcgcaggagcttgttgccaaggatttgcacggcactgaatggaggttccgccatatttaccgaggccagccacgtcggcaccttttaaccacaggttggagtgcatttgttaacaagaagaagcttgtttctggggatgccgtactatttttgcgaggtgatgatggggagctaagactgggagttcgccgtgcagctcagcttaaaaatgggtctgcTtttccagcgctttacaaccagtgttctaatcttggtacacttgccaatgttgcacatgcagtggctacagAaagtgtgttcaacatatactacaatcccaggttaagtcagtccgaattcattgtaccctactggaagttcatgaaaagcctcagccaaccattttctgttgggctgaggttcaaaatgagatatgaaagtgaagatgctagtgaaagaaggtacaccgggataattactggaagtggtgatacagaccctatgtggcatggttcgaaatggaaatgtttgttggtgaggtgggatgacgAcgctgagttccgtcgaccaaacagggtctctccttgggagatTGAGCtgactagttcagtgtcaggatcccaTttgtccacaCcccattcaaagcgattgaaaccatgtcttccccatgttaatccagaatacatggttccacgtggaggtggttgtcctgattttgcggaatctgcccaattccacaaggtcttgcaaggtcaagaattattgggttttaaatctcatggtggtactgctgctgctacttctcagccatgtgaagcaaggcatttacagtacaTtgatgagcggagttgctccagcgatgcgagtaacagtatcctaggggttccaagacttggtgatagagcaccacttggaaacccaggattttCctaccattgctcaggctttGgggagtctcagagactccaaaaggtcttgcaaggtcaagaattatttcgtccctaccgaggaactttggttgatgcgtctatgggtagtaatgggtttcatcaacaagatagtcctcgtgcaccaggtgtggtgaataaaTggcaggcacaacttcatggccgtgctgcTtttcatggaccgccagcactggctcttccatctcaatcatcatctccgccatctgtcctaatgtttcagcaagctaattcaaagatgcccaggttggagtttgggcatggacagttggacaagcacgagaatgataggcgtgttaggtttggtccttctgaaggaattgaaagaagagagcaaagaataccactccagccttatcctacttctggagaagtgatagatggacaggttacagttgagaagtctcactcccctggtcgacatggaaaggatggtccagataacaaagctgttggcacaaatagttgcaaaatatttggcatctctttgactgagaaggttccagcaagagaagaactagatgatggcgacgccaactattcactccagtctttgaagcaagtgccaaaatccctgggcaatagttgtgctaccgttcatgagcaaaggcctgttgTtggcagggtgattgatatttcaactatggatatgatgatctga
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| Protein seq | MTGIDLNTVEEDEEEAAEEVAANGSSPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESEDASERRYTGIITGSGDTDPMWHGSKWKCLLVRWDDDAEFRRPNRVSPWEIELTSSVSGSHLSTPHSKRLKPCLPHVNPEYMVPRGGGCPDFAESAQFHKVLQGQELLGFKSHGGTAAATSQPCEARHLQYIDERSCSSDASNSILGVPRLGDRAPLGNPGFSYHCSGFGESQRLQKVLQGQELFRPYRGTLVDASMGSNGFHQQDSPRAPGVVNKWQAQLHGRAAFHGPPALALPSQSSSPPSVLMFQQANSKMPRLEFGHGQLDKHENDRRVRFGPSEGIERREQRIPLQPYPTSGEVIDGQVTVEKSHSPGRHGKDGPDNKAVGTNSCKIFGISLTEKVPAREELDDGDANYSLQSLKQVPKSLGNSCATVHEQRPVVGRVIDISTMDMMI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026570 | OsLima_05g0026570.02 | Chr05 | 29098210 | 29103732 | + | NAM | ||
| CDS seq | atgaccgggatcgacctcaacaccgtcgaggaggacgaggaggaggcggcggaggaggtggcggcgaacggctcgtctccggctccggcgagggcgggcgcggtgtgcctcgagctgtggcacgcctgcgccgggcccgtggcgccgctgccgaggaaagggggcgtcgtcgtgtacctgccgcaggggcatctcgagcacctcggcgacgcgcccgcggcggcggcggccgcggccgccgtgccgccgcacgtcttctgccgcgtcgtcgacgtcaccctcctcgcggacgcggcgaccgacgagGTgtacgcgcagctctcgcttgtcccggagaaggaggaggtggcgaggcgggcggacgacggcgagggcgaggacggggacggcatgaagcagcggttcgcgcggatgccgcacatgttctgcaagacgctcacggcgtccgacaccagcacgcacggcggcttctctgtgccgcgccgcgccgccgaggactgcttccctccactggattacagccagcagcggccgtcgcaggagcttgttgccaaggatttgcacggcactgaatggaggttccgccatatttaccgaggccagccacgtcggcaccttttaaccacaggttggagtgcatttgttaacaagaagaagcttgtttctggggatgccgtactatttttgcgaggtgatgatggggagctaagactgggagttcgccgtgcagctcagcttaaaaatgggtctgcTtttccagcgctttacaaccagtgttctaatcttggtacacttgccaatgttgcacatgcagtggctacagAaagtgtgttcaacatatactacaatcccaggttaagtcagtccgaattcattgtaccctactggaagttcatgaaaagcctcagccaaccattttctgttgggctgaggttcaaaatgagatatgaaagtgaagatgctagtgaaagaaggtacaccgggataattactggaagtggtgatacagaccctatgtggcatggttcgaaatggaaatgtttgttggtgaggtgggatgacgAcgctgagttccgtcgaccaaacagggtctctccttgggagatTGAGCtgactagttcagtgtcaggatcccaTttgtccacaCcccattcaaagcgattgaaaccatgtcttccccatgttaatccagaatacatggttccacgtggaggtggttgtcctgattttgcggaatctgcccaattccacaaggtcttgcaaggtcaagaattattgggttttaaatctcatggtggtactgctgctgctacttctcagccatgtgaagcaaggcatttacagtacaTtgatgagcggagttgctccagcgatgcgagtaacagtatcctaggggttccaagacttggtgatagagcaccacttggaaacccaggattttCctaccattgctcaggctttGgggagtctcagagactccaaaaggtcttgcaaggtcaagaattatttcgtccctaccgaggaactttggttgatgcgtctatgggtagtaatgggtttcatcaacaagatagtcctcgtgcaccaggtgtggtgaataaaTggcaggcacaacttcatggccgtgctgcTtttcatggaccgccagcactggctcttccatctcaatcatcatctccgccatctgtcctaatgtttcagcaagctaattcaaagatgcccaggttggagtttgggcatggacagttggacaagcacgagaatgataggcgtgttaggtttggtccttctgaaggaattgaaagaagagagcaaagaataccactccagccttatcctacttctggagaagtgatagatggacaggttacagttgagaagtctcactcccctggtcgacatggaaaggatggtccagataacaaagctgttggcacaaatagttgcaaaatatttggcatctctttgactgagaaggttccagcaagagaagaactagatgatggcgacgccaactattcactccagtctttgaagcaagtgccaaaatccctgggcaatagttgtgctaccgtgagtgttttatga
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| Protein seq | MTGIDLNTVEEDEEEAAEEVAANGSSPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESEDASERRYTGIITGSGDTDPMWHGSKWKCLLVRWDDDAEFRRPNRVSPWEIELTSSVSGSHLSTPHSKRLKPCLPHVNPEYMVPRGGGCPDFAESAQFHKVLQGQELLGFKSHGGTAAATSQPCEARHLQYIDERSCSSDASNSILGVPRLGDRAPLGNPGFSYHCSGFGESQRLQKVLQGQELFRPYRGTLVDASMGSNGFHQQDSPRAPGVVNKWQAQLHGRAAFHGPPALALPSQSSSPPSVLMFQQANSKMPRLEFGHGQLDKHENDRRVRFGPSEGIERREQRIPLQPYPTSGEVIDGQVTVEKSHSPGRHGKDGPDNKAVGTNSCKIFGISLTEKVPAREELDDGDANYSLQSLKQVPKSLGNSCATVSVL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026570 | OsLima_05g0026570.05 | Chr05 | 29098210 | 29103732 | + | NAM | ||
| CDS seq | atgaccgggatcgacctcaacaccgtcgaggaggacgaggaggaggcggcggaggaggtggcggcgaacggctcgtctccggctccggcgagggcgggcgcggtgtgcctcgagctgtggcacgcctgcgccgggcccgtggcgccgctgccgaggaaagggggcgtcgtcgtgtacctgccgcaggggcatctcgagcacctcggcgacgcgcccgcggcggcggcggccgcggccgccgtgccgccgcacgtcttctgccgcgtcgtcgacgtcaccctcctcgcggacgcggcgaccgacgagGTgtacgcgcagctctcgcttgtcccggagaaggaggaggtggcgaggcgggcggacgacggcgagggcgaggacggggacggcatgaagcagcggttcgcgcggatgccgcacatgttctgcaagacgctcacggcgtccgacaccagcacgcacggcggcttctctgtgccgcgccgcgccgccgaggactgcttccctccactggattacagccagcagcggccgtcgcaggagcttgttgccaaggatttgcacggcactgaatggaggttccgccatatttaccgaggccagccacgtcggcaccttttaaccacaggttggagtgcatttgttaacaagaagaagcttgtttctggggatgccgtactatttttgcgaggtgatgatggggagctaagactgggagttcgccgtgcagctcagcttaaaaatgggtctgcTtttccagcgctttacaaccagtgttctaatcttggtacacttgccaatgttgcacatgcagtggctacagAaagtgtgttcaacatatactacaatcccaggttaagtcagtccgaattcattgtaccctactggaagttcatgaaaagcctcagccaaccattttctgttgggctgaggttcaaaatgagatatgaaagtgaagatgctagtgaaagaaggtacaccgggataattactggaagtggtgatacagaccctatgtggcatggttcgaaatggaaatgtttgttggtgaggtgggatgacgAcgctgagttccgtcgaccaaacagggtctctccttgggagatTGAGCtgactagttcagtgtcaggatcccaTttgtccacaCcccattcaaagcgattgaaaccatgtcttccccatgttaatccagaatacatggttccacgtggaggtggttgtcctgattttgcggaatctgcccaattccacaaggtcttgcaaggtcaagaattattgggttttaaatctcatggtggtactgctgctgctacttctcagccatgtgaagcaaggcatttacagtacaTtgatgagcggagttgctccagcgatgcgagtaacagtatcctaggggttccaagacttggtgatagagcaccacttggaaacccaggattttCctaccattgctcaggctttGgggagtctcagagactccaaaaggtcttgcaaggtcaagaattatttcgtccctaccgaggaactttggttgatgcgtctatgggtagtaatgggtttcatcaacaagatagtcctcgtgcaccaggtgtggtgaataaaTggcaggcacaacttcatggccgtgctgcTtttcatggaccgccagcactggctcttccatctcaatcatcatctccgccatctgtcctaatgtttcagcaagctaattcaaagatgcccaggttggagtttgggcatggacagttggacaagcacgagaatgataggcgtgttaggtttggtccttctgaaggaattgaaagaagagagcaaagaataccactccagccttatcctacttctggagaagtgatagatggacaggttacagttgagaagtctcactcccctggtcgacatggaaaggatggtccagataacaaagctgttggcacaaatagttgcaaaatatttggcatctctttgactgagaaggttccagcaagagaagaactagatgatggcgacgccaactattcactccagtctttgaagcaagtgccaaaatccctgggcaatagttgtgctaccgtgagtgttttatga
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| Protein seq | MTGIDLNTVEEDEEEAAEEVAANGSSPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESEDASERRYTGIITGSGDTDPMWHGSKWKCLLVRWDDDAEFRRPNRVSPWEIELTSSVSGSHLSTPHSKRLKPCLPHVNPEYMVPRGGGCPDFAESAQFHKVLQGQELLGFKSHGGTAAATSQPCEARHLQYIDERSCSSDASNSILGVPRLGDRAPLGNPGFSYHCSGFGESQRLQKVLQGQELFRPYRGTLVDASMGSNGFHQQDSPRAPGVVNKWQAQLHGRAAFHGPPALALPSQSSSPPSVLMFQQANSKMPRLEFGHGQLDKHENDRRVRFGPSEGIERREQRIPLQPYPTSGEVIDGQVTVEKSHSPGRHGKDGPDNKAVGTNSCKIFGISLTEKVPAREELDDGDANYSLQSLKQVPKSLGNSCATVSVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 29103001 | 29103103 | + | OsLima_05g0026570.03,OsLima_05g0026570.04 | OsLima_05g0026570.04,OsLima_05g0026570.03,OsLima_05g0026570.01 | All |
| RI | Chr05 | 29102136 | 29103732 | + | OsLima_05g0026570.02 | OsLima_05g0026570.05,OsLima_05g0026570.02 | All |
| RI | Chr05 | 29102136 | 29103204 | + | OsLima_05g0026570.05 | OsLima_05g0026570.05,OsLima_05g0026570.01 | All |
| RI | Chr05 | 29102136 | 29103204 | + | OsLima_05g0026570.05 | OsLima_05g0026570.05,OsLima_05g0026570.03 | All |
| A5 | Chr05 | 29103171 | 29103291 | + | OsLima_05g0026570.01,OsLima_05g0026570.03,OsLima_05g0026570.05 | OsLima_05g0026570.04,OsLima_05g0026570.05,OsLima_05g0026570.03,OsLima_05g0026570.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.184009 | 0.038731 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0563400 | RBH | 2.732831 | 1.655363 | 6.042767 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48870 | RBH | 1.796631 | 1.724233 | 1.434132 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0563400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026950 | RBH | 0.822777 | 10.503539 | 7.736892 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026740 | RBH | 0.740772 | 3.912145 | 2.313612 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026730 | RBH | 0.742619 | 6.328497 | 8.938925 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026800 | RBH | 0.194489 | 0.230684 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026730 | RBH | 9.058252 | 1.256150 | 18.572794 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0436300 | RBH | 20.0233 | 17.436325 | 70.9060365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026380 | RBH | 0.437245 | 0.453103 | 1.327029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0447900 | RBH | 25.3507035 | 4.128575 | 86.3279225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027550 | RBH | 0.073217 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026450 | RBH | 0.860292 | 6.980419 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026640 | RBH | 2.917167 | 8.554508 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026690 | RBH | 1.018901 | 0.416581 | 1.768534 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026690 | RBH | 0.120969 | 2.461446 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026170 | RBH | 0.158459 | 0.385255 | 2.854656 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026700 | RBH | 1.098597 | 11.349065 | 9.925444 |
