Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0026390 | OGI:05075440 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:28924410-28927289 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctttgacatttgcagcagagttgcacaagggcagtatcaaacatgggcaGggagttgcacaaggtaaaggttgcacgaacagcagtatgcacagcaagatcgtcatcctgcaggatgtaggTttttcagaagcacattgatcattgtttctaccttggctccactggtgagaggacctccacttcagcccaccagagcggagacAatctgggcgttgctgcatccggcgaaatggctatggtctctctcagccttgtggtgatctccctcatgcctggtctcttcgttgggtcactctggatgcattccatgattatctgacagatcacatctagctcattttctttgtgtgactctagtactggatcaagcagggaggctatactccgacctttgataatgcaccccaaagcctgtaagataagaaaaataaagaacagttttattttctttaatctgatgttgaattggatttcttttgtgtaagttaaactgttgaagcatttgactttgcaggctgctgtgattaccagattcgccagggagccctcgttttcagagtaagggggtttccctgagatgatttcaagaagcagtatgccaaaactgtaaacgttccctgccagtctagcagatattggttcatgatgattattattcgctgtcgactttttgccgtcggaaaccacttcctgccaaacactcaagtctgcaatctgaagaaaggatacagattttagcatcaaactgtactttactgagtattgaataaagttgggtactgaaactgcgtttttctctaaacctccttcacatcacaaggacattaaaagaactactgaaaccatagcaactgaatatggctaagatgcctaattcttgataaaccataaggcataacaaggatttagttataccatatgtacctttgcagcacaatcttcagaaagaaatactgcacttgaatgcagatcagggtgcacgttggcagggttgagctcatgcatgtgctgaatacagtaagctattcccatgattattctcattctacttctccagtcgatgtgatcaaaggcctcatctgcacaaataatttaccagcatgttatcacttgaatgtgaagAaaaaaaatggtattcctcattgcaacaatgagaataactttcacatagtatttaccatggagattctcataaagcgtcccatttggtgcgtattcgaacaccatcaccctcgtgaaaggttcttcctcctcacaaaaccccagcagattgatgaaattcttatgatttattcgtgagagcgactctatctgcttgttcacaagggaaaaaaaaaggcaaattttttcatgctaatgcaattctgcaaaaggattagttgaggatctagtacacatattatgactacctttttcctgaaacaatcttcacagtgctttgaccaatctttgctggatttaatcgttgtcgatacaacggcgatctcaacaccggatgataaggttcccttgtagacagtgtagtatggatgacttgccacaatattactgaagtcctcacaagcacgctccagttctggacgctgtaattggggcactcctgaagcacattcagatcagaacacagtgaaaaccagaaacacaacatgaatatttgatctgaaaaccagacttgaacacagtcaagaacttaccgttataagaataggatgtaacagaacaatataagAaaatattacaaatcaaaatggcaaatattgcagtattacctgacacaaatgccttctgcagctggccactgagtccagtcctccaagggccaatagtcgcaacggatttcttgcggcatggcaagaacatccatgccatgccagcaagcataatcaaaccagccactggaatcacaaccatatacagccacttcttgaatcctttgcttgatcctttctttgcagaagcctcggcagggtgggatgaactatctagaggcttgtaatttggatcattttgcagttgatgagatgttggaaacgtcatgtttccaactgttgggaaatgatctttgtagagtagagcagcgtgatttctgtcatgaagtagcctccggttgctaagctgaacgggtagctcgtccagtgaggagcaaccgatcacgacagcttggagaatcagcaccacgagcacgaaagaactcgatgaatccatcagtgggatattcgcgaccaacacctgatgattcagttgctagtgtcttgaataaatcagaacacaggggcagaatcatcagccaaattcacctgaaacacaggtgttcatatcttactgtcagatgccttctgccaagatcaggcaaagaacaacctcagtttcagaaacagatagggaactgaagatacttcatcacctcgaaagcaattgAaagcgcataccttttgcttggctgctgttcagacttcagaaataattctgctcacacagtgcagaaactggagcatgcaagggttcaggcttcagactagacagaggctagaggaagcaacaggagctcgattcttggtagtagttgaagaaccaggagcaaatcttcagataaagaaaaaaaaagggggagatttttctgcaacgactaaactggatacaggaggagtgggtaaaactcttggttcactgcattcccttgtattcttttctctttgtcaaacatctcggttgtgttgatcagttaatgcagggattattaaacaagaaggaagaggacgaagacggagactactaacccatcgttatctccatgggcaactccacttagtacacgctaatctcacgtttgaaaaatcggccacgtaatcatagccaagaagcaactactctgcaatct
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| CDS seq | atggattcatcgagttctttcgtgctcgtggtgctgattctccaagctgtcgtgatcggttgctcctcactggacgagctacccgttcagcttagcaaccggaggctacttcatgacagaaatcacgctgctctactctacaaagatcatttcccaacagttggaaacatgacgtttccaacatctcatcaactgcaaaatgatccaaattacaagcctctagatagttcatcccaccctgccgaggcttctgcaaagaaaggatcaagcaaaggattcaagaagtggctgtatatggttgtgattccagtggctggtttgattatgcttgctggcatggcatggatgttcttgccatgccgcaagaaatccgttgcgactattggcccttggaggactggactcagtggccagctgcagaaggcatttgtgtcaggagtgccccaattacagcgtccagaactggagcgtgcttgtgaggacttcagtaatattgtggcaagtcatccatactacactgtctacaagggaaccttatcatccggtgttgagatcgccgttgtatcgacaacgattaaatccagcaaagattggtcaaagcactgtgaagattgtttcaggaaaaagatagagtcgctctcacgaataaatcataagaatttcatcaatctgctggggttttgtgaggaggaagaacctttcacgagggtgatggtgttcgaatacgcaccaaatgggacgctttatgagaatctccatgatgaggcctttgatcacatcgactggagaagtagaatgagaataatcatgggaatagcttactgtattcagcacatgcatgagctcaaccctgccaacgtgcaccctgatctgcattcaagtgcagtatttctttctgaagattgtgctgcaaagattgcagacttgagtgtttggcaggaagtggtttccgacggcaaaaagtcgacagcgaataataatcatcatgaaccaatatctgctagactggcagggaacgtttacagttttggcatactgcttcttgaaatcatctcagggaaacccccttactctgaaaacgagggctccctggcgaatctggctttggggtgcattatcaaaggtcggagtatagcctccctgcttgatccagtactagagtcacacaaagaaaatgagctagatgtgatctgtcagataatcatggaatgcatccagagtgacccaacgaagagaccaggcatgagggagatcaccacaaggctgagagagaccatagccatttcgccggatgcagcaacgcccagatTgtctccgctctggtgggctgaagtggaggtcctctcaccagtggagccaaggtag
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| Protein seq | MDSSSSFVLVVLILQAVVIGCSSLDELPVQLSNRRLLHDRNHAALLYKDHFPTVGNMTFPTSHQLQNDPNYKPLDSSSHPAEASAKKGSSKGFKKWLYMVVIPVAGLIMLAGMAWMFLPCRKKSVATIGPWRTGLSGQLQKAFVSGVPQLQRPELERACEDFSNIVASHPYYTVYKGTLSSGVEIAVVSTTIKSSKDWSKHCEDCFRKKIESLSRINHKNFINLLGFCEEEEPFTRVMVFEYAPNGTLYENLHDEAFDHIDWRSRMRIIMGIAYCIQHMHELNPANVHPDLHSSAVFLSEDCAAKIADLSVWQEVVSDGKKSTANNNHHEPISARLAGNVYSFGILLLEIISGKPPYSENEGSLANLALGCIIKGRSIASLLDPVLESHKENELDVICQIIMECIQSDPTKRPGMREITTRLRETIAISPDAATPRLSPLWWAEVEVLSPVEPR |
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| Function | Protein MALE DISCOVERER 2 [UniProtKB/Swiss-Prot:C0LGQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026390 | OsLima_05g0026390.02 | Chr05 | 28924410 | 28927289 | - | NAM | ||
| CDS seq | atggattcatcgagttctttcgtgctcgtggtgctgattctccaagctgtcgtgatcggttgctcctcactggacgagctacccgttcagcttagcaaccggaggctacttcatgacagaaatcacgctgctctactctacaaagatcatttcccaacagttggaaacatgacgtttccaacatctcatcaactgcaaaatgatccaaattacaagcctctagatagttcatcccaccctgccgaggcttctgcaaagaaaggatcaagcaaaggattcaagaagtggctgtatatggttgtgattccagtggctggtttgattatgcttgctggcatggcatggatgttcttgccatgccgcaagaaatccgttgcgactattggcccttggaggactggactcagtggccagctgcagaaggcatttgtgtcaggagtgccccaattacagcgtccagaactggagcgtgcttgtgaggacttcagtaatattgtggcaagtcatccatactacactgtctacaagggaaccttatcatccggtgttgagatcgccgttgtatcgacaacgattaaatccagcaaagattggtcaaagcactgtgaagattgtttcaggaaaaagatagagtcgctctcacgaataaatcataagaatttcatcaatctgctggggttttgtgaggaggaagaacctttcacgagggtgatggtgttcgaatacgcaccaaatgggacgctttatgagaatctccatgatgaggcctttgatcacatcgactggagaagtagaatgagaataatcatgggaatagcttactgtattcagcacatgcatgagctcaaccctgccaacgtgcaccctgatctgcattcaagtgcagtatttctttctgaagattgtgctgcaaagattgcagacttgagtgtttggcaggaagtggtttccgacggcaaaaagtcgacagcgaataataatcatcatgaaccaatatctgctagactggcagggaacgtttacagttttggcatactgcttcttgaaatcatctcagggaaacccccttactctgaaaacgagggctccctggcgaatctggctttggggtgcattatcaaaggtcggagtatagcctccctgcttgatccagtactagagtcacacaaagaaaatgagctagatgtgatctgtcagataatcatggaatgcatccagagtgacccaacgaagagaccaggcatgagggagatcaccacaaggctgagagagaccatagccatttcgccggatgcagcaacgcccagatTgtctccgctctggtgggctgaagtggaggtcctctcaccagtggagccaaggtag
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| Protein seq | MDSSSSFVLVVLILQAVVIGCSSLDELPVQLSNRRLLHDRNHAALLYKDHFPTVGNMTFPTSHQLQNDPNYKPLDSSSHPAEASAKKGSSKGFKKWLYMVVIPVAGLIMLAGMAWMFLPCRKKSVATIGPWRTGLSGQLQKAFVSGVPQLQRPELERACEDFSNIVASHPYYTVYKGTLSSGVEIAVVSTTIKSSKDWSKHCEDCFRKKIESLSRINHKNFINLLGFCEEEEPFTRVMVFEYAPNGTLYENLHDEAFDHIDWRSRMRIIMGIAYCIQHMHELNPANVHPDLHSSAVFLSEDCAAKIADLSVWQEVVSDGKKSTANNNHHEPISARLAGNVYSFGILLLEIISGKPPYSENEGSLANLALGCIIKGRSIASLLDPVLESHKENELDVICQIIMECIQSDPTKRPGMREITTRLRETIAISPDAATPRLSPLWWAEVEVLSPVEPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026390 | OsLima_05g0026390.01 | Chr05 | 28924410 | 28927289 | - | NAM | ||
| CDS seq | atggattcatcgagttctttcgtgctcgtggtgctgattctccaagctgtcgtgatcggttgctcctcactggacgagctacccgttcagcttagcaaccggaggctacttcatgacagaaatcacgctgctctactctacaaagatcatttcccaacagttggaaacatgacgtttccaacatctcatcaactgcaaaatgatccaaattacaagcctctagatagttcatcccaccctgccgaggcttctgcaaagaaaggatcaagcaaaggattcaagaagtggctgtatatggttgtgattccagtggctggtttgattatgcttgctggcatggcatggatgttcttgccatgccgcaagaaatccgttgcgactattggcccttggaggactggactcagtggccagctgcagaaggcatttgtgtcaggagtgccccaattacagcgtccagaactggagcgtgcttgtgaggacttcagtaatattgtggcaagtcatccatactacactgtctacaagggaaccttatcatccggtgttgagatcgccgttgtatcgacaacgattaaatccagcaaagattggtcaaagcactgtgaagattgtttcaggaaaaagatagagtcgctctcacgaataaatcataagaatttcatcaatctgctggggttttgtgaggaggaagaacctttcacgagggtgatggtgttcgaatacgcaccaaatgggacgctttatgagaatctccatgatgaggcctttgatcacatcgactggagaagtagaatgagaataatcatgggaatagcttactgtattcagcacatgcatgagctcaaccctgccaacgtgcaccctgatctgcattcaagtgcagtatttctttctgaagattgtgctgcaaagattgcagacttgagtgtttggcaggaagtggtttccgacggcaaaaagtcgacagcgaataataatcatcatgaaccaatatctgctagactggcagggaacgtttacagttttggcatactgcttcttgaaatcatctcagggaaacccccttactctgaaaacgagggctccctggcgaatctggctttggggtgcattatcaaaggtcggagtatagcctccctgcttgatccagtactagagtcacacaaagaaaatgagctagatgtgatctgtcagataatcatggaatgcatccagagtgacccaacgaagagaccaggcatgagggagatcaccacaaggctgagagagaccatagccatttcgccggatgcagcaacgcccagatTgtctccgctctggtgggctgaagtggaggtcctctcaccagtggagccaaggtag
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| Protein seq | MDSSSSFVLVVLILQAVVIGCSSLDELPVQLSNRRLLHDRNHAALLYKDHFPTVGNMTFPTSHQLQNDPNYKPLDSSSHPAEASAKKGSSKGFKKWLYMVVIPVAGLIMLAGMAWMFLPCRKKSVATIGPWRTGLSGQLQKAFVSGVPQLQRPELERACEDFSNIVASHPYYTVYKGTLSSGVEIAVVSTTIKSSKDWSKHCEDCFRKKIESLSRINHKNFINLLGFCEEEEPFTRVMVFEYAPNGTLYENLHDEAFDHIDWRSRMRIIMGIAYCIQHMHELNPANVHPDLHSSAVFLSEDCAAKIADLSVWQEVVSDGKKSTANNNHHEPISARLAGNVYSFGILLLEIISGKPPYSENEGSLANLALGCIIKGRSIASLLDPVLESHKENELDVICQIIMECIQSDPTKRPGMREITTRLRETIAISPDAATPRLSPLWWAEVEVLSPVEPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 28926708 | 28926841 | - | OsLima_05g0026390.02 | OsLima_05g0026390.02,OsLima_05g0026390.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.292187 | 0.964436 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0560300 | RBH | 2.100998 | 1.330613 | 0.906782 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48660 | RBH | 1.329663 | 0.842379 | 0.217333 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0560300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026780 | RBH | 0.210413 | 37.490612 | 2.142609 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026570 | RBH | 0.110510 | 7.901540 | 0.457439 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026560 | RBH | 0.907290 | 17.255562 | 2.879095 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026630 | RBH | 0.051084 | 0.288195 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026560 | RBH | 1.991411 | 28.619741 | 5.661061 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0434100 | RBH | 2.1018675 | 46.7803705 | 1.4360025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026210 | RBH | 0.162904 | 1.582463 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0368800 | SBH | 6.694638 | 20.385088 | 5.798865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027810 | RBH | 0.105563 | 0.096551 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026280 | RBH | 0.261319 | 23.163080 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026470 | RBH | 0.000000 | 63.895100 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026520 | RBH | 0.223108 | 2.941152 | 0.767767 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026520 | RBH | 0.392459 | 12.679832 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026000 | RBH | 0.506586 | 0.000000 | 0.659607 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026520 | RBH | 0.450594 | 55.925293 | 4.744066 |
