Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0025210 | OGI:05073120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:28111404-28112855 | ||||||||
| Gene Symbol | OsMYB86-L2, RLM1 | ||||||||||
| DNA seq | atgggacggctgtcgtcgtgcggcggcgtgcaggcgaagctgaggaaggggctttggtctcccgaggaagacgataagctgtacaatcacatcatccgacatggcgtcggctgctggagctccgtccccaagctcgcaggcaagcaagaaagcacgcaattcaaatgagacaccaactgttcgatcgatcgatcgatcgccattgccgatttggcgagcttgattgggctaattttggttttttgggtcgtgcagggttgcagcgatgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacctgaagcgcgggagcttctcgcagcaggaggaggacctcatcgtcgcgctgcacgagatcctcgggaacaggtcggtttcatgtcttggattctgcattgccgtttcggagcttgcttgctttcttgcaatggcggcagccatggaggttggtcggagggataaaggatttgagggggaatAatggtgtggtgcaggtggtcgcagatcgcgtcgcacttgccGgggaggacggacaacgagatcaagaacttctggaacagctgcctcaagaagaagctccggcaacgcggcctcgacccggccacgcacaagcccatcgccgccgccgccgccgcggcgacgtcctcggagtcggcggtcacccaggtggatgaggatcacaagccccacggcgccgccgccgccgccgccgacggcctcgccgcgaacgccaagcagtcggtgttcgacccgttcccggtgaccgacttcggcgccggcttcgacctcggcgcggcgaacatggcggcggcgctgtacggctcccAccccgacgacggcgccgggttcgtcgccgactacagcagcgtgctcgacgtgtcggagaacctgggctacggcgagagctccagcaacagcagcaactggacctgcgccgaggtgagcaatgtgctcgacagcgaagtgctcaactgggccgcctcggccggcgccgacgccgccgccaaggcagagcccttcgccgacatggagcagcagcacagtggctatggcggcgagtatcaggtggaagacgacgccacgctggagcacaagttctcgctgccatgccatgagcagagcttggctcaattcgacttcaacttggaatacttctgatcaattaatttttaccactccttttttttaccacactacagtatattctacacgtacaggataaagaaccattggaagattaggattgttattattattattactactactacatgttaattttctctagcccggactctactcacactgtttcttttttcttttttttttgagaaaatgtatactgTttttctggttggttagaataagagacattactactatacacacgagaacattgtgcactataataataatattattttttttgttgagag
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| CDS seq | atgggacggctgtcgtcgtgcggcggcgtgcaggcgaagctgaggaaggggctttggtctcccgaggaagacgataagctgtacaatcacatcatccgacatggcgtcggctgctggagctcccgatgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacctgaagcgcgggagcttctcgcagcaggaggaggacctcatcgtcgcgctgcacgagatcctcgggaacaggtggtcgcagatcgcgtcgcacttgccGgggaggacggacaacgagatcaagaacttctggaacagctgcctcaagaagaagctccggcaacgcggcctcgacccggccacgcacaagcccatcgccgccgccgccgccgcggcgacgtcctcggagtcggcggtcacccaggtggatgaggatcacaagccccacggcgccgccgccgccgccgccgacggcctcgccgcgaacgccaagcagtcggtgttcgacccgttcccggtgaccgacttcggcgccggcttcgacctcggcgcggcgaacatggcggcggcgctgtacggctcccAccccgacgacggcgccgggttcgtcgccgactacagcagcgtgctcgacgtgtcggagaacctgggctacggcgagagctccagcaacagcagcaactggacctgcgccgaggtgagcaatgtgctcgacagcgaagtgctcaactgggccgcctcggccggcgccgacgccgccgccaaggcagagcccttcgccgacatggagcagcagcacagtggctatggcggcgagtatcaggtggaagacgacgccacgctggagcacaagttctcgctgccatgccatgagcagagcttggctcaattcgacttcaacttggaatacttctga
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| Protein seq | MGRLSSCGGVQAKLRKGLWSPEEDDKLYNHIIRHGVGCWSSRCGKSCRLRWINYLRPDLKRGSFSQQEEDLIVALHEILGNRWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPIAAAAAAATSSESAVTQVDEDHKPHGAAAAAADGLAANAKQSVFDPFPVTDFGAGFDLGAANMAAALYGSHPDDGAGFVADYSSVLDVSENLGYGESSSNSSNWTCAEVSNVLDSEVLNWAASAGADAAAKAEPFADMEQQHSGYGGEYQVEDDATLEHKFSLPCHEQSLAQFDFNLEYF |
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| Function | Myb-related protein Hv33 [UniProtKB/Swiss-Prot:P20027] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0025210 | OsLima_05g0025210.01 | Chr05 | 28111404 | 28112577 | + | NAM | ||
| CDS seq | atgggacggctgtcgtcgtgcggcggcgtgcaggcgaagctgaggaaggggctttggtctcccgaggaagacgataagctgtacaatcacatcatccgacatggcgtcggctgctggagctcccgatgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacctgaagcgcgggagcttctcgcagcaggaggaggacctcatcgtcgcgctgcacgagatcctcgggaacaggtggtcgcagatcgcgtcgcacttgccGgggaggacggacaacgagatcaagaacttctggaacagctgcctcaagaagaagctccggcaacgcggcctcgacccggccacgcacaagcccatcgccgccgccgccgccgcggcgacgtcctcggagtcggcggtcacccaggtggatgaggatcacaagccccacggcgccgccgccgccgccgccgacggcctcgccgcgaacgccaagcagtcggtgttcgacccgttcccggtgaccgacttcggcgccggcttcgacctcggcgcggcgaacatggcggcggcgctgtacggctcccAccccgacgacggcgccgggttcgtcgccgactacagcagcgtgctcgacgtgtcggagaacctgggctacggcgagagctccagcaacagcagcaactggacctgcgccgaggtgagcaatgtgctcgacagcgaagtgctcaactgggccgcctcggccggcgccgacgccgccgccaaggcagagcccttcgccgacatggagcagcagcacagtggctatggcggcgagtatcaggtggaagacgacgccacgctggagcacaagttctcgctgccatgccatgagcagagcttggctcaattcgacttcaacttggaatacttctga
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| Protein seq | MGRLSSCGGVQAKLRKGLWSPEEDDKLYNHIIRHGVGCWSSRCGKSCRLRWINYLRPDLKRGSFSQQEEDLIVALHEILGNRWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPIAAAAAAATSSESAVTQVDEDHKPHGAAAAAADGLAANAKQSVFDPFPVTDFGAGFDLGAANMAAALYGSHPDDGAGFVADYSSVLDVSENLGYGESSSNSSNWTCAEVSNVLDSEVLNWAASAGADAAAKAEPFADMEQQHSGYGGEYQVEDDATLEHKFSLPCHEQSLAQFDFNLEYF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0025210 | OsLima_05g0025210.02 | Chr05 | 28112488 | 28112855 | + | IsoSeq | ||
| CDS seq | atgttaattttctctagcccggactctactcacactgtttcttttttctttttt |
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| Protein seq | MLIFSSPDSTHTVSFFFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.330187 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0543600 | RBH | 0.416626 | 0.562642 | 2.897123 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46610 | RBH | 0.250251 | 0.336124 | 0.688131 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0543600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025600 | RBH | 0.142731 | 14.799689 | 4.723871 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025350 | RBH | 0.165335 | 7.620481 | 1.255314 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025350 | RBH | 0.303727 | 13.530700 | 1.903656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025390 | RBH | 0.0 | 0.320852 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025380 | RBH | 0.0 | 11.259335 | 3.896286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0420200 | RBH | 4.859836 | 7.0120775 | 0.1227615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025040 | RBH | 0.0 | 0.668788 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0431700 | RBH | 0 | 0 | 0.0108975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025100 | RBH | 0.136853 | 14.222697 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025300 | RBH | 0.0 | 31.140257 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025280 | RBH | 0.0 | 0.309409 | 0.427972 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025340 | RBH | 0.0 | 4.700507 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024780 | RBH | 0.0 | 2.880774 | 1.635383 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025190 | RBH | 0.0 | 2.976700 | 0.000000 |
