Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0025020 | OGI:05072790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:28003460-28005261 | ||||||||
| Gene Symbol | OsFbox276, Os_F0412 | ||||||||||
| DNA seq | atggctccactggattccggcggcgtcaccgcctcatcgcccctcccccccgatccccaaagccacccgtcgaatcgagtccgaatagtatgagcagctgcggcctcggtgcgattccggttcggattccagctgcggcccgcggcggatgctatctagtcgcggccgcggggacgccattgcgatctcagggcatcagatgcgcgcgccaaaccccacgccgccgcgcgactccgccatggctatgaggaggaaaggttcgtcctatcgccgccgccggcgggcgcccgcggcttgcggcgacaaccgcatcgacgacctgacggacgatctgctgctgatcatcctgcggaggctcgacacccgctccgcgctcgccaccgcggcgctctccaggcgctggtccggcctcgcgcgcgcgggcctcgaggctctcgatttcatggtcggcgacatcctcccgccgcgctaccaccggtgcatccagctccacgagtccgccagtggtgtgttcaatggcgccgacgagctcagaaccatcgttgctagcatcaggcggcacgagcgcctcgccatgcgaaacatggtcgcctccatcaacaacttcctcgacgccgatgatggttttgcccatggcgacggcggcggcggagctccacggaggaggatcagtaggctgcgggtggagttcatcgccacacactaccacgactgcatcaaccgcttggtcgccaaggctgttgatacttggggagttgaggatctagaggttcttggtaggacaacgtattggcggcatcattttcaggatgcccacatcttccgtcgccatggtctctgcaatgacctgcacagatcccgtttgcaaagcctgaagctggtggactgtgtgattcccccattgcaggggttccaagctctcaccaagctggtcctgcaagacttgcgggactccacacccgcggcagcctacgaagcagtgtgttcagctcatgcctacagttgcaagaggtgcacctcaagtcctgcccctgcaagcggggcagtagtgttttcgttgatgcccccaggtcaatgatcaggcagcttgttctggagtgttgtggcgtccctgggtttgagctgcacgctctgccaatgcttgagagtatagttgtcatgcagacctgggtacggtacaagcttggatccttcccgcgcctcgtgcgcctgaacctcaaatgcgatggtctcaggcataaacttaacttttgcttgccttcgaacttggatctcaagccgcatcttggattcactccagacataactgacctggttatacgattcaccggatatgaaagatggtttcggccttcgtgcccttcgttgctgttaccaaagcttaccaggcttctgattgccgatgtgccttcatcatgggatatctcttggccccgactcctagtagcagcgccatgtctggagagccttcatatccatattaccccttgggaaggagagacttgcaatgatattttgtggcagccatccaagttgcagcacaaacggctaaaggagttggtgatcattggttttgaaggaacagagagacagatttactttgttaactttgtcattgaagtgtcaatggtgttggagcttgtttccttgagtatggccgtgttcaggaaataggttactgggtctggaacattgtgaggcaacaacaccgttggtgtgatgaggagagagcaaaaatactggatcagcttgctgataaaatttcttgctcagcaactccagttcaagtatttcttgagtga
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| CDS seq | atggctccactggattccggcggcgtcaccgcctcatcgcccctcccccccgatccccaaagccacccgtcgaatcgagtccgaatactgcggcctcggtgcgattccggttcggattccagctgcggcccgcggcggatgctatctagtcgcggccgcggggacgccattgcgatctcagggcatcagatgcgcgcgccaaaccccacgccgccgcgcgactccgccatggctatgaggaggaaaggttcgtcctatcgccgccgccggcgggcgcccgcggcttgcggcgacaaccgcatcgacgacctgacggacgatctgctgctgatcatcctgcggaggctcgacacccgctccgcgctcgccaccgcggcgctctccaggcgctggtccggcctcgcgcgcgcgggcctcgaggctctcgatttcatggtcggcgacatcctcccgccgcgctaccaccggtgcatccagctccacgagtccgccagtggtgtgttcaatggcgccgacgagctcagaaccatcgttgctagcatcaggcggcacgagcgcctcgccatgcgaaacatggtcgcctccatcaacaacttcctcgacgccgatgatggttttgcccatggcgacggcggcggcggagctccacggaggaggatcagtaggctgcgggtggagttcatcgccacacactaccacgactgcatcaaccgcttggtcgccaaggctgttgatacttggggagttgaggatctagaggttcttggtaggacaacgtattggcggcatcattttcaggatgcccacatcttccgtcgccatggtctctgcaatgacctgcacagatcccgtttgcaaagcctgaagctggtggactgtgtgattcccccattgcaggggttccaagctctcaccaagctggtcctgcaagacttgcgggactccacacccgcggcagcctacgaagcattgcaagaggtgcacctcaagtcctgcccctgcaagcggggcagtagtgttttcgttgatgcccccaggtcaatgatcaggcagcttgttctggagtgttgtggcgtccctgggtttgagctgcacgctctgccaatgcttgagagtatagttgtcatgcagacctgggtacggtacaagcttggatccttcccgcgcctcgtgcgcctgaacctcaaatgcgatggtctcaggcataaacttaacttttgcttgccttcgaacttggatctcaagccgcatcttggattcactccagacataactgacctggttatacgattcaccggatatgaaagatggtttcggccttcgtgcccttcgttgctgttaccaaagcttaccaggcttctgattgccgatgtgccttcatcatgggatatctcttggccccgactcctagtagcagcgccatgtctggagagccttcatatccatattaccccttgggaaggagagacttgcaatgatattttgtggcagccatccaagttgcagcacaaacggctaaaggagttggtgatcattggttttgaaggaacagagagacagatttactttgttaactttgtcattgaagtgtcaatggtgttggagcttgaaataggttactgggtctggaacattgtgaggcaacaacaccgttggtgtgatgaggagagagcaaaaatactggatcagcttgctgataaaatttcttgctcagcaactccagttcaagtatttcttgagtga
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| Protein seq | MAPLDSGGVTASSPLPPDPQSHPSNRVRILRPRCDSGSDSSCGPRRMLSSRGRGDAIAISGHQMRAPNPTPPRDSAMAMRRKGSSYRRRRRAPAACGDNRIDDLTDDLLLIILRRLDTRSALATAALSRRWSGLARAGLEALDFMVGDILPPRYHRCIQLHESASGVFNGADELRTIVASIRRHERLAMRNMVASINNFLDADDGFAHGDGGGGAPRRRISRLRVEFIATHYHDCINRLVAKAVDTWGVEDLEVLGRTTYWRHHFQDAHIFRRHGLCNDLHRSRLQSLKLVDCVIPPLQGFQALTKLVLQDLRDSTPAAAYEALQEVHLKSCPCKRGSSVFVDAPRSMIRQLVLECCGVPGFELHALPMLESIVVMQTWVRYKLGSFPRLVRLNLKCDGLRHKLNFCLPSNLDLKPHLGFTPDITDLVIRFTGYERWFRPSCPSLLLPKLTRLLIADVPSSWDISWPRLLVAAPCLESLHIHITPWEGETCNDILWQPSKLQHKRLKELVIIGFEGTERQIYFVNFVIEVSMVLELEIGYWVWNIVRQQHRWCDEERAKILDQLADKISCSATPVQVFLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0025020 | OsLima_05g0025020.01 | Chr05 | 28003460 | 28005261 | + | NAM | ||
| CDS seq | atggctccactggattccggcggcgtcaccgcctcatcgcccctcccccccgatccccaaagccacccgtcgaatcgagtccgaatactgcggcctcggtgcgattccggttcggattccagctgcggcccgcggcggatgctatctagtcgcggccgcggggacgccattgcgatctcagggcatcagatgcgcgcgccaaaccccacgccgccgcgcgactccgccatggctatgaggaggaaaggttcgtcctatcgccgccgccggcgggcgcccgcggcttgcggcgacaaccgcatcgacgacctgacggacgatctgctgctgatcatcctgcggaggctcgacacccgctccgcgctcgccaccgcggcgctctccaggcgctggtccggcctcgcgcgcgcgggcctcgaggctctcgatttcatggtcggcgacatcctcccgccgcgctaccaccggtgcatccagctccacgagtccgccagtggtgtgttcaatggcgccgacgagctcagaaccatcgttgctagcatcaggcggcacgagcgcctcgccatgcgaaacatggtcgcctccatcaacaacttcctcgacgccgatgatggttttgcccatggcgacggcggcggcggagctccacggaggaggatcagtaggctgcgggtggagttcatcgccacacactaccacgactgcatcaaccgcttggtcgccaaggctgttgatacttggggagttgaggatctagaggttcttggtaggacaacgtattggcggcatcattttcaggatgcccacatcttccgtcgccatggtctctgcaatgacctgcacagatcccgtttgcaaagcctgaagctggtggactgtgtgattcccccattgcaggggttccaagctctcaccaagctggtcctgcaagacttgcgggactccacacccgcggcagcctacgaagcattgcaagaggtgcacctcaagtcctgcccctgcaagcggggcagtagtgttttcgttgatgcccccaggtcaatgatcaggcagcttgttctggagtgttgtggcgtccctgggtttgagctgcacgctctgccaatgcttgagagtatagttgtcatgcagacctgggtacggtacaagcttggatccttcccgcgcctcgtgcgcctgaacctcaaatgcgatggtctcaggcataaacttaacttttgcttgccttcgaacttggatctcaagccgcatcttggattcactccagacataactgacctggttatacgattcaccggatatgaaagatggtttcggccttcgtgcccttcgttgctgttaccaaagcttaccaggcttctgattgccgatgtgccttcatcatgggatatctcttggccccgactcctagtagcagcgccatgtctggagagccttcatatccatattaccccttgggaaggagagacttgcaatgatattttgtggcagccatccaagttgcagcacaaacggctaaaggagttggtgatcattggttttgaaggaacagagagacagatttactttgttaactttgtcattgaagtgtcaatggtgttggagcttgaaataggttactgggtctggaacattgtgaggcaacaacaccgttggtgtgatgaggagagagcaaaaatactggatcagcttgctgataaaatttcttgctcagcaactccagttcaagtatttcttgagtga
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| Protein seq | MAPLDSGGVTASSPLPPDPQSHPSNRVRILRPRCDSGSDSSCGPRRMLSSRGRGDAIAISGHQMRAPNPTPPRDSAMAMRRKGSSYRRRRRAPAACGDNRIDDLTDDLLLIILRRLDTRSALATAALSRRWSGLARAGLEALDFMVGDILPPRYHRCIQLHESASGVFNGADELRTIVASIRRHERLAMRNMVASINNFLDADDGFAHGDGGGGAPRRRISRLRVEFIATHYHDCINRLVAKAVDTWGVEDLEVLGRTTYWRHHFQDAHIFRRHGLCNDLHRSRLQSLKLVDCVIPPLQGFQALTKLVLQDLRDSTPAAAYEALQEVHLKSCPCKRGSSVFVDAPRSMIRQLVLECCGVPGFELHALPMLESIVVMQTWVRYKLGSFPRLVRLNLKCDGLRHKLNFCLPSNLDLKPHLGFTPDITDLVIRFTGYERWFRPSCPSLLLPKLTRLLIADVPSSWDISWPRLLVAAPCLESLHIHITPWEGETCNDILWQPSKLQHKRLKELVIIGFEGTERQIYFVNFVIEVSMVLELEIGYWVWNIVRQQHRWCDEERAKILDQLADKISCSATPVQVFLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0540600 | SBH | 0.674430 | 1.075943 | 2.944175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46380 | RBH | 0.138917 | 0.0 | 0.064622 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0540600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025400 | RBH | 0.0 | 1.502942 | 1.024900 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025150 | RBH | 0.073577 | 0.0 | 0.269899 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025150 | RBH | 0.0 | 1.276898 | 1.042308 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025180 | RBH | 0.0 | 0.0 | 1.931805 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0418300 | RBH | 0.4072185 | 1.8110485 | 2.4035415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024850 | RBH | 0.0 | 0.0 | 0.070708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0429600 | RBH | 0.366109 | 1.1124895 | 3.788947 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024940 | SBH | 0.216328 | 0.077403 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024900 | RBH | 0.093977 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025090 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025140 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024580 | RBH | 0.000000 | 0.0 | 0.305373 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025000 | RBH | 0.000000 | 2.055482 | 0.0 |
