Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0024810 | OGI:05072410 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:27895935-27897221 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgatcagcctcggcggcgatgggcggcggcggacgacgacgtcctgcacgaggtcgcccgccgcatcccgtgcgagctcgatcgccgccacatgagtcgcgtgtgcaactcctggcgcgtggcgctcgcgaagctcgaggtcccggcgccgccgcctccgctcccgtggctcgccctCcctgagtccgacgacgggctgcccgccaccgtctcctgcatcctcagcggctgccgcgcccacgccttctccgtccttcaaggcgcacacggcgcgcgctacttcggttcgtacgacggcggatggctcttcctcgccgtcggcggccaagctcgacgccaagccctcctcaacctcaagatcgacggcttccagaccctcgacctccccaacctggcccgcgtcaactcagtgtacccgaatgaagtgaatccgaacggtgaccgtgagatggccatcgtcgccgccaccctctcgtgccagccaactgaacaaggatgcatcgtcgccggcatcatcgaatcatcccccaacctcgtcgccgttggccatgtcactcggagcattgcgttctggcgcatgggcgatcaggtggtcttaccggttttCtgggcactggagaaggacaacccattgatgtggctagaagaagtggaggacctcctatgccacaatggagccttccatttcctcacccgagtggaagacgtccttgcgtgcgaagaaccaccggtcttctacagagattccgtgagcctggtcccggtaaacatgttcttcctgccgcgcgtccacgacgaggacgagacggttcttgctcgctacctcgtggggtccggcaagaagctgctcatggtggtcaggctagctagtggccGgggtcagcggcgcacgacgtcggcgttccgggtgttccagaaggaaaagttcaacaccgtcgaagaagacgagccgtcccagaatcgctctgctcaTtttgagtactactggagcgagctggacctggacgagctcgatggccggatgctgttcgtcggacgaggctgctccagatcctacgaggcgggtgatggcaggtaCcccggcatgggggagggcgtctacttcttggatgatccgagcatccaccagatgatcagcggtgatgcacccaaacagccgtacctctgcagcgacaacggcaaatggtcgaaagcaccaactgatccccagggccaggtcgagcgctgcttcccggagcgaggcccatcgatccactcgcctccggtttggattctcccttga
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| CDS seq | atggctgatcagcctcggcggcgatgggcggcggcggacgacgacgtcctgcacgaggtcgcccgccgcatcccgtgcgagctcgatcgccgccacatgagtcgcgtgtgcaactcctggcgcgtggcgctcgcgaagctcgaggtcccggcgccgccgcctccgctcccgtggctcgccctCcctgagtccgacgacgggctgcccgccaccgtctcctgcatcctcagcggctgccgcgcccacgccttctccgtccttcaaggcgcacacggcgcgcgctacttcggttcgtacgacggcggatggctcttcctcgccgtcggcggccaagctcgacgccaagccctcctcaacctcaagatcgacggcttccagaccctcgacctccccaacctggcccgcgtcaactcagtgtacccgaatgaagtgaatccgaacggtgaccgtgagatggccatcgtcgccgccaccctctcgtgccagccaactgaacaaggatgcatcgtcgccggcatcatcgaatcatcccccaacctcgtcgccgttggccatgtcactcggagcattgcgttctggcgcatgggcgatcaggtggtcttaccggttttCtgggcactggagaaggacaacccattgatgtggctagaagaagtggaggacctcctatgccacaatggagccttccatttcctcacccgagtggaagacgtccttgcgtgcgaagaaccaccggtcttctacagagattccgtgagcctggtcccggtaaacatgttcttcctgccgcgcgtccacgacgaggacgagacggttcttgctcgctacctcgtggggtccggcaagaagctgctcatggtggtcaggctagctagtggccGgggtcagcggcgcacgacgtcggcgttccgggtgttccagaaggaaaagttcaacaccgtcgaagaagacgagccgtcccagaatcgctctgctcaTtttgagtactactggagcgagctggacctggacgagctcgatggccggatgctgttcgtcggacgaggctgctccagatcctacgaggcgggtgatggcaggtaCcccggcatgggggagggcgtctacttcttggatgatccgagcatccaccagatgatcagcggtgatgcacccaaacagccgtacctctgcagcgacaacggcaaatggtcgaaagcaccaactgatccccagggccaggtcgagcgctgcttcccggagcgaggcccatcgatccactcgcctccggtttggattctcccttga
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| Protein seq | MADQPRRRWAAADDDVLHEVARRIPCELDRRHMSRVCNSWRVALAKLEVPAPPPPLPWLALPESDDGLPATVSCILSGCRAHAFSVLQGAHGARYFGSYDGGWLFLAVGGQARRQALLNLKIDGFQTLDLPNLARVNSVYPNEVNPNGDREMAIVAATLSCQPTEQGCIVAGIIESSPNLVAVGHVTRSIAFWRMGDQVVLPVFWALEKDNPLMWLEEVEDLLCHNGAFHFLTRVEDVLACEEPPVFYRDSVSLVPVNMFFLPRVHDEDETVLARYLVGSGKKLLMVVRLASGRGQRRTTSAFRVFQKEKFNTVEEDEPSQNRSAHFEYYWSELDLDELDGRMLFVGRGCSRSYEAGDGRYPGMGEGVYFLDDPSIHQMISGDAPKQPYLCSDNGKWSKAPTDPQGQVERCFPERGPSIHSPPVWILP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0024810 | OsLima_05g0024810.01 | Chr05 | 27895935 | 27897221 | + | NAM | ||
| CDS seq | atggctgatcagcctcggcggcgatgggcggcggcggacgacgacgtcctgcacgaggtcgcccgccgcatcccgtgcgagctcgatcgccgccacatgagtcgcgtgtgcaactcctggcgcgtggcgctcgcgaagctcgaggtcccggcgccgccgcctccgctcccgtggctcgccctCcctgagtccgacgacgggctgcccgccaccgtctcctgcatcctcagcggctgccgcgcccacgccttctccgtccttcaaggcgcacacggcgcgcgctacttcggttcgtacgacggcggatggctcttcctcgccgtcggcggccaagctcgacgccaagccctcctcaacctcaagatcgacggcttccagaccctcgacctccccaacctggcccgcgtcaactcagtgtacccgaatgaagtgaatccgaacggtgaccgtgagatggccatcgtcgccgccaccctctcgtgccagccaactgaacaaggatgcatcgtcgccggcatcatcgaatcatcccccaacctcgtcgccgttggccatgtcactcggagcattgcgttctggcgcatgggcgatcaggtggtcttaccggttttCtgggcactggagaaggacaacccattgatgtggctagaagaagtggaggacctcctatgccacaatggagccttccatttcctcacccgagtggaagacgtccttgcgtgcgaagaaccaccggtcttctacagagattccgtgagcctggtcccggtaaacatgttcttcctgccgcgcgtccacgacgaggacgagacggttcttgctcgctacctcgtggggtccggcaagaagctgctcatggtggtcaggctagctagtggccGgggtcagcggcgcacgacgtcggcgttccgggtgttccagaaggaaaagttcaacaccgtcgaagaagacgagccgtcccagaatcgctctgctcaTtttgagtactactggagcgagctggacctggacgagctcgatggccggatgctgttcgtcggacgaggctgctccagatcctacgaggcgggtgatggcaggtaCcccggcatgggggagggcgtctacttcttggatgatccgagcatccaccagatgatcagcggtgatgcacccaaacagccgtacctctgcagcgacaacggcaaatggtcgaaagcaccaactgatccccagggccaggtcgagcgctgcttcccggagcgaggcccatcgatccactcgcctccggtttggattctcccttga
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| Protein seq | MADQPRRRWAAADDDVLHEVARRIPCELDRRHMSRVCNSWRVALAKLEVPAPPPPLPWLALPESDDGLPATVSCILSGCRAHAFSVLQGAHGARYFGSYDGGWLFLAVGGQARRQALLNLKIDGFQTLDLPNLARVNSVYPNEVNPNGDREMAIVAATLSCQPTEQGCIVAGIIESSPNLVAVGHVTRSIAFWRMGDQVVLPVFWALEKDNPLMWLEEVEDLLCHNGAFHFLTRVEDVLACEEPPVFYRDSVSLVPVNMFFLPRVHDEDETVLARYLVGSGKKLLMVVRLASGRGQRRTTSAFRVFQKEKFNTVEEDEPSQNRSAHFEYYWSELDLDELDGRMLFVGRGCSRSYEAGDGRYPGMGEGVYFLDDPSIHQMISGDAPKQPYLCSDNGKWSKAPTDPQGQVERCFPERGPSIHSPPVWILP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0539150 | RBH | 0.0 | 0.0 | 0.274478 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46170 | RBH | 0.0 | 0.0 | 0.070591 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0539150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025160 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024940 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024950 | SBH | 0.0 | 0.0 | 0.173369 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0416300 | RBH | 0.0098215 | 0.002092 | 0.0100035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024630 | RBH | 0.0 | 0.0 | 0.092590 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0427600 | SBH | 0.053269 | 0.0482005 | 0.0206235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024830 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024690 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024880 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024370 | RBH | 0.0 | 0.0 | 0.275713 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024800 | SBH | 0.0 | 0.0 | 0.0 |
