Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0024250 | OGI:05071190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:27496427-27498034 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtagaagtaccccaacactaccaaactcttttcccttgcctcggaattctcgcaattaacgtgacaagttactaccactaacatagcagagttacatacagatcaaaccaccacgcgcgcgcgtgccgcgagctcagagcagaaggcagcagctgcagcacagcgccacggcgaccggccggatgagcagcagcgctgaccagcggccgccggcgagccagagttgtccatctcgcctgaacaatgtgccaactgatagtacgtcggtggcggcggacacggaggcgatgtccccgccgtcgccggcgcggcggcagacgccgacgccgacgtcggcctgcaagacggcgcggccgtcgacgcacagccccgggttgccgctgaggtcgaggttccggccgaggcgcctgaggaacgcgccgtcgaacggcacgacgccgtccagcccgttcttgctcaggttgaggtggtacatccgcttgagccggctcagcccggcggggatcctcccggtgaggttgttgttctccagcgacagcgtcgtcaggctcgccagccggccgagcgtctccgggatcgaccccgagtagccggagttggccagccggagctcctgcagccgcgcaatgtcgccgagctccgacggcaacgggacgcccatcgggttgttctccatgatcaggtactggaggtcaaggaggtcggagaggccggccgggaggtggccgcttaggccattgttgctcaatgccaagaaggtgagagatgtcagcccggtgatggtggccgggacgccgccggtgaggttgttggagctcaggtccagcttctgaagcatggcgaggtcgccgagctggcccgggatggagccggagaaggagttgtagctgaggtcgaggccgaccaagctccggagctcgccgatgcggctcgggatcgtgccggtgagcgagttgtagctgaggtcgaggtgcacgaggctcttgagctcgccgatgccctgcgggacctcgccgcggatgagcgcgttctgggacacggtcagcacctgcagcgaccggatgctggacagctgcggcggcagcgtgccggacagcgacgggttggaccggacgctgagctgctgcaggcgggaggaggtgaggttggccgacggaggcagcgtgaacgccgtggtggCCGCCGGGTTCTTGAAACAGTCGACGAGGAACAGCGACTGGAGGTGCGGCAGCGCGAACGCGAGGTGCGGGAACGCCGCGCCGTCCTTGCACGTCGGGTTCGGCGCCACCCCGAAGTCCAGCCGCGTGACGTGCAGCCTCGCCGCCGCCGACGACACGTTCCCGGCGGCCGGCACAGGCTTGCACTCGAGGCCGGGCCACGGGGAGCCGCACGGGTCAGGGCCGACGGAGCGCCAGTCGCGGTCGGAGGAGACGGCCTCCATGACGAGCAGCAGCGTCTCCCTCTCGGCGGGGTCCATGGCCAGCGCCGCCGTAGCCGCCGCCGCCATGGAGAGGAGGTGGAGGAGGAGCGCGACGGAGGCTACAGGCATGATGGCGCGCGCGCGTGTGGCGTCGAGGTTTCGCTTTTGGGAGGCGCCGATGTTATTCA
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| CDS seq | ATGCCTGTAGCCTCCGTCGCGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGACTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTCACGCGGCTGGACTTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTCCCGCACCTCGCGTTCGCGCTGCCGCACCTCCAGTCGCTGTTCCTCGTCGACTGTTTCAAGAACCCGGCGGccaccacggcgttcacgctgcctccgtcggccaacctcacctcctcccgcctgcagcagctcagcgtccggtccaacccgtcgctgtccggcacgctgccgccgcagctgtccagcatccggtcgctgcaggtgctgaccgtgtcccagaacgcgctcatccgcggcgaggtcccgcagggcatcggcgagctcaagagcctcgtgcacctcgacctcagctacaactcgctcaccggcacgatcccgagccgcatcggcgagctccggagcttggtcggcctcgacctcagctacaactccttctccggctccatcccgggccagctcggcgacctcgccatgcttcagaagctggacctgagctccaacaacctcaccggcggcgtcccggccaccatcaccgggctgacatctctcaccttcttggcattgagcaacaatggcctaagcggccacctcccggccggcctctccgacctccttgacctccagtacctgatcatggagaacaacccgatgggcgtcccgttgccgtcggagctcggcgacattgcgcggctgcaggagctccggctggccaactccggctactcggggtcgatcccggagacgctcggccggctggcgagcctgacgacgctgtcgctggagaacaacaacctcaccgggaggatccccgccgggctgagccggctcaagcggatgtaccacctcaacctgagcaagaacgggctggacggcgtcgtgccgttcgacggcgcgttcctcaggcgcctcggccggaacctcgacctcagcggcaacccggggctgtgcgtcgacggccgcgccgtcttgcaggccgacgtcggcgtcggcgtctgccgccgcgccggcgacggcggggacatcgcctccgtgtccgccgccaccgacgtactatcagttggcacattgttcaggcgagatggacaactctggctcgccggcggccgctggtcagcgctgctgctcatccggccggtcgccgtggcgctgtgctgcagctgctgccttctgctctga
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| Protein seq | MPVASVALLLHLLSMAAAATAALAMDPAERETLLLVMEAVSSDRDWRSVGPDPCGSPWPGLECKPVPAAGNVSSAAARLHVTRLDFGVAPNPTCKDGAAFPHLAFALPHLQSLFLVDCFKNPAATTAFTLPPSANLTSSRLQQLSVRSNPSLSGTLPPQLSSIRSLQVLTVSQNALIRGEVPQGIGELKSLVHLDLSYNSLTGTIPSRIGELRSLVGLDLSYNSFSGSIPGQLGDLAMLQKLDLSSNNLTGGVPATITGLTSLTFLALSNNGLSGHLPAGLSDLLDLQYLIMENNPMGVPLPSELGDIARLQELRLANSGYSGSIPETLGRLASLTTLSLENNNLTGRIPAGLSRLKRMYHLNLSKNGLDGVVPFDGAFLRRLGRNLDLSGNPGLCVDGRAVLQADVGVGVCRRAGDGGDIASVSAATDVLSVGTLFRRDGQLWLAGGRWSALLLIRPVAVALCCSCCLLL |
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| Function | Receptor like protein 29 [UniProtKB/Swiss-Prot:Q9SJH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0024250 | OsLima_05g0024250.01 | Chr05 | 27496427 | 27498034 | - | NAM | ||
| CDS seq | ATGCCTGTAGCCTCCGTCGCGCTCCTCCTCCACCTCCTCTCCATGGCGGCGGCGGCTACGGCGGCGCTGGCCATGGACCCCGCCGAGAGGGAGACGCTGCTGCTCGTCATGGAGGCCGTCTCCTCCGACCGCGACTGGCGCTCCGTCGGCCCTGACCCGTGCGGCTCCCCGTGGCCCGGCCTCGAGTGCAAGCCTGTGCCGGCCGCCGGGAACGTGTCGTCGGCGGCGGCGAGGCTGCACGTCACGCGGCTGGACTTCGGGGTGGCGCCGAACCCGACGTGCAAGGACGGCGCGGCGTTCCCGCACCTCGCGTTCGCGCTGCCGCACCTCCAGTCGCTGTTCCTCGTCGACTGTTTCAAGAACCCGGCGGccaccacggcgttcacgctgcctccgtcggccaacctcacctcctcccgcctgcagcagctcagcgtccggtccaacccgtcgctgtccggcacgctgccgccgcagctgtccagcatccggtcgctgcaggtgctgaccgtgtcccagaacgcgctcatccgcggcgaggtcccgcagggcatcggcgagctcaagagcctcgtgcacctcgacctcagctacaactcgctcaccggcacgatcccgagccgcatcggcgagctccggagcttggtcggcctcgacctcagctacaactccttctccggctccatcccgggccagctcggcgacctcgccatgcttcagaagctggacctgagctccaacaacctcaccggcggcgtcccggccaccatcaccgggctgacatctctcaccttcttggcattgagcaacaatggcctaagcggccacctcccggccggcctctccgacctccttgacctccagtacctgatcatggagaacaacccgatgggcgtcccgttgccgtcggagctcggcgacattgcgcggctgcaggagctccggctggccaactccggctactcggggtcgatcccggagacgctcggccggctggcgagcctgacgacgctgtcgctggagaacaacaacctcaccgggaggatccccgccgggctgagccggctcaagcggatgtaccacctcaacctgagcaagaacgggctggacggcgtcgtgccgttcgacggcgcgttcctcaggcgcctcggccggaacctcgacctcagcggcaacccggggctgtgcgtcgacggccgcgccgtcttgcaggccgacgtcggcgtcggcgtctgccgccgcgccggcgacggcggggacatcgcctccgtgtccgccgccaccgacgtactatcagttggcacattgttcaggcgagatggacaactctggctcgccggcggccgctggtcagcgctgctgctcatccggccggtcgccgtggcgctgtgctgcagctgctgccttctgctctga
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| Protein seq | MPVASVALLLHLLSMAAAATAALAMDPAERETLLLVMEAVSSDRDWRSVGPDPCGSPWPGLECKPVPAAGNVSSAAARLHVTRLDFGVAPNPTCKDGAAFPHLAFALPHLQSLFLVDCFKNPAATTAFTLPPSANLTSSRLQQLSVRSNPSLSGTLPPQLSSIRSLQVLTVSQNALIRGEVPQGIGELKSLVHLDLSYNSLTGTIPSRIGELRSLVGLDLSYNSFSGSIPGQLGDLAMLQKLDLSSNNLTGGVPATITGLTSLTFLALSNNGLSGHLPAGLSDLLDLQYLIMENNPMGVPLPSELGDIARLQELRLANSGYSGSIPETLGRLASLTTLSLENNNLTGRIPAGLSRLKRMYHLNLSKNGLDGVVPFDGAFLRRLGRNLDLSGNPGLCVDGRAVLQADVGVGVCRRAGDGGDIASVSAATDVLSVGTLFRRDGQLWLAGGRWSALLLIRPVAVALCCSCCLLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0530701 | RBH | 0.0 | 0.0 | 1.296640 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45430 | RBH | 0.0 | 0.0 | 0.329975 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0530701 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024620 | RBH | 0.0 | 0.0 | 1.571757 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024460 | RBH | 0.0 | 0.0 | 1.286086 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024440 | RBH | 0.0 | 0.0 | 1.849221 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024460 | RBH | 0.0 | 2.144784 | 3.511667 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0407900 | RBH | 0.700625 | 0.4420425 | 13.701227 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024050 | RBH | 0.0 | 0.166697 | 0.076597 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0420200 | RBH | 0.91275 | 0.7242385 | 20.248889 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024320 | RBH | 0.0 | 0.154717 | 0.149196 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023790 | RBH | 0.0 | 0.0 | 0.210714 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024240 | RBH | 0.0 | 0.0 | 1.457379 |
