Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0023350 | OGI:05069300 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:26793091-26794040 | ||||||||
| Gene Symbol | OsOFP25, OsOFP23 | ||||||||||
| DNA seq | tcagcaatggcgagctcgtcggcggcgggagaggtggaggtggaggttgatgtactcgaaccagacctggcggaacaccttgacgatgcagtcgtggtgctcgtcggcgttgagggcgaggtagcacgccagcagccgctccagctcctccggccgcgccgcgatgctcccgccgctgctcgcgatcatctccaccatcgactcccggaacgcccgctgcgggtcgcgcgtgcgccgcaccaccgccagcctctccagctccggcgccgaggcggccgcgcgcggtggccgtatccggaccgccggcaTCCtcccggacacggagaacgaccgcctgccgctcccgcccaggctgctgcggcggcggcggtgcgcgcggcgccggtggcgtcgcgtccgcagcttggccccggcgtcggtgtctgacggtgtcgcgccgccggcggcggcggcagcggcgttctccggtggctgggaagctggggagcctgcgagggagaaggggatcaggtggccgagcggcgggaggtcacggtcgccgccgagggagcagtggcggcgCGGCGGCGTTGTTGCTGGCAGAGCCGCCGCGCCACGGCCTCGGCACTGTCATTGCCAACGGACAGCCGCCGCGGGGCGACGTCCACGGATGAGCGGCGCGGCGGGCTGGACCTCCCCGCGGCGACGTCGTCGACCGCCGCCACCACCGAGCTCGAGCTCGCGGCGGCGGCGGCGGCGCGCTTGGGGAGACGACAAGAAGGCCCCGCCATGGACGCCGCCGGCGCGTGCTTGGCACCGCCGCACTTCCCGTGCGACGACCTCGCCGTCAGCTTGGCGATCCACGACAGCGGCGAGAACGAGAACGCCGCCGCCTTCCCCTTACCTCCTCCCCCTCGCTCCGCCGCCGCCGCCGCTTGCTGCTGCGGCTGCCTCCTGATCCCCCATCCCAT
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| CDS seq | ATGGGATGGGGGATCAGGAGGCAGCCGCAGCAGCAAGCGGCGGCGGCGGCGGAGCGAGGGGGAGGAGGTAAGGGGAAGGCGGCGGCGTTCTCGTTCTCGCCGCTGTCGTGGATCGCCAAGCTGACGGCGAGGTCGTCGCACGGGAAGTGCGGCGGTGCCAAGCACGCGCCGGCGGCGTCCATGGCGGGGCCTTCTTGTCGTCTCCCCAAGCGCGCCGCCGCCGCCGCCGCGAGCTCGAGCTCGGTGGTGGCGGCGGTCGACGACGTCGCCGCGGGGAGGTCCAGCCCGCCGCGCCGCTCATCCGTGGACGTCGCCCCGCGGCGGCTGTCCTGCCGAGGCCGTGGCGCGGCGGCTCTGCCAGCAACAACGCCGCCGcgccgccactgctccctcggcggcgaccgtgacctcccgccgctcggccacctgatccccttctccctcgcaggctccccagcttcccagccaccggagaacgccgctgccgccgccgccggcggcgcgacaccgtcagacaccgacgccggggccaagctgcggacgcgacgccaccggcgccgcgcgcaccgccgccgccgcagcagcctgggcgggagcggcaggcggtcgttctccgtgtccgggaGGAtgccggcggtccggatacggccaccgcgcgcggccgcctcggcgccggagctggagaggctggcggtggtgcggcgcacgcgcgacccgcagcgggcgttccgggagtcgatggtggagatgatcgcgagcagcggcgggagcatcgcggcgcggccggaggagctggagcggctgctggcgtgctacctcgccctcaacgccgacgagcaccacgactgcatcgtcaaggtgttccgccaggtctggttcgagtacatcaacctccacctccacctctcccgccgccgacgagctcgccattgctga
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| Protein seq | MGWGIRRQPQQQAAAAAERGGGGKGKAAAFSFSPLSWIAKLTARSSHGKCGGAKHAPAASMAGPSCRLPKRAAAAAASSSSVVAAVDDVAAGRSSPPRRSSVDVAPRRLSCRGRGAAALPATTPPRRHCSLGGDRDLPPLGHLIPFSLAGSPASQPPENAAAAAAGGATPSDTDAGAKLRTRRHRRRAHRRRRSSLGGSGRRSFSVSGRMPAVRIRPPRAAASAPELERLAVVRRTRDPQRAFRESMVEMIASSGGSIAARPEELERLLACYLALNADEHHDCIVKVFRQVWFEYINLHLHLSRRRRARHC |
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| Function | Transcription repressor OFP4 [UniProtKB/Swiss-Prot:F4HNU8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0023350 | OsLima_05g0023350.01 | Chr05 | 26793091 | 26794040 | - | NAM | ||
| CDS seq | ATGGGATGGGGGATCAGGAGGCAGCCGCAGCAGCAAGCGGCGGCGGCGGCGGAGCGAGGGGGAGGAGGTAAGGGGAAGGCGGCGGCGTTCTCGTTCTCGCCGCTGTCGTGGATCGCCAAGCTGACGGCGAGGTCGTCGCACGGGAAGTGCGGCGGTGCCAAGCACGCGCCGGCGGCGTCCATGGCGGGGCCTTCTTGTCGTCTCCCCAAGCGCGCCGCCGCCGCCGCCGCGAGCTCGAGCTCGGTGGTGGCGGCGGTCGACGACGTCGCCGCGGGGAGGTCCAGCCCGCCGCGCCGCTCATCCGTGGACGTCGCCCCGCGGCGGCTGTCCTGCCGAGGCCGTGGCGCGGCGGCTCTGCCAGCAACAACGCCGCCGcgccgccactgctccctcggcggcgaccgtgacctcccgccgctcggccacctgatccccttctccctcgcaggctccccagcttcccagccaccggagaacgccgctgccgccgccgccggcggcgcgacaccgtcagacaccgacgccggggccaagctgcggacgcgacgccaccggcgccgcgcgcaccgccgccgccgcagcagcctgggcgggagcggcaggcggtcgttctccgtgtccgggaGGAtgccggcggtccggatacggccaccgcgcgcggccgcctcggcgccggagctggagaggctggcggtggtgcggcgcacgcgcgacccgcagcgggcgttccgggagtcgatggtggagatgatcgcgagcagcggcgggagcatcgcggcgcggccggaggagctggagcggctgctggcgtgctacctcgccctcaacgccgacgagcaccacgactgcatcgtcaaggtgttccgccaggtctggttcgagtacatcaacctccacctccacctctcccgccgccgacgagctcgccattgctga
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| Protein seq | MGWGIRRQPQQQAAAAAERGGGGKGKAAAFSFSPLSWIAKLTARSSHGKCGGAKHAPAASMAGPSCRLPKRAAAAAASSSSVVAAVDDVAAGRSSPPRRSSVDVAPRRLSCRGRGAAALPATTPPRRHCSLGGDRDLPPLGHLIPFSLAGSPASQPPENAAAAAAGGATPSDTDAGAKLRTRRHRRRAHRRRRSSLGGSGRRSFSVSGRMPAVRIRPPRAAASAPELERLAVVRRTRDPQRAFRESMVEMIASSGGSIAARPEELERLLACYLALNADEHHDCIVKVFRQVWFEYINLHLHLSRRRRARHC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0517100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44090 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0517100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023670 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023520 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023600 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0397000 | RBH | 0.48486 | 0.692118 | 0.4934115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023180 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0407500 | RBH | 0.399924 | 0.113166 | 2.536852 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023450 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022920 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023300 | RBH | 0.0 | 0.0 | 0.0 |
