Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0022930 | OGI:05068550 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:26486353-26494333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaagtgtaagcaaaaactcaaaatcccttatattatgggacggagggagtatgttacaagctaattaagagccctgggaaggcagaacaaaagaggggtgaatttaattgcaatacacatgcccgtcagaaatggtagcaagtatacactagctgtaacctgagacccatcatcaccgaagctgtaacccaaacacacggcgaaccaaacaaacatcgccgcgtacagcaaacaccactctttggacagaggagggatttttgtatgaagaatttgagaagagaaagcatcggttagaatttacaaagcttggacgggaaacaagatcaaaaggaaccaatttttttcttgttttaattatctgtgttttacttttgaaaacctccttatcctatttatgtcgaggttggtattgttctggtggaatggtggagtgagatgaaggttgcccctccttacggggcaacatatttaagaaacttccttgaacaggctcatcttcatccatgctctctgttttaaggataaaagcaagttaaacatatcatgaaaaacggtacatggtgtataaggaaccaataggtaataatagtgctcaataccaaataatgtcttgatagttggccgctttgacttggaactcttcttcttcaactcagctgttccataagcacaacATtttttttcaaacaaaagacactaaaaatgcataatctaaagaaaggcatcatcatttacaatttcattagagagagagagagagagtgctaaccaattcctgcaacctcatcatcatttacaatttcaaaattcttatatgtatagccaacaaagtttgcatccttggacggaagcatctgcaaaaatagcggtgctcttcgttttagttcattggctaagaggcaatacgaaaatgaaacatctctaattaagcatgttaatttctgcctcctaaaagcaatagttggaaattttggaaatgttcctaatacatacTAGttttttatatatttttatggctacagactagctagcagtgaatcacaagcttcatgcccatggtccatcactagtcaagctatgtatgttccctatctacattctacagatagcagaaaatagagtcgcacaggcgacacacgtgctgccgtaaaatatatatgatataacagttgtttgaccaacacatatgcagcttcattattaggaatgtgtttccaactactcagtaattagcatttcatggtgaagtcacacatacctttctccatggacctgacttagatgaactttgaatttgtgctccggtctgcaaaatagtaagaaaggtaagtacaggtgtcataacttcagctttctatacagtttaccaaaatagcatactcgtagttttaggtttcactctcaaaagaccagaaataaacatgttaccatggagacgatgtaaaacgtggctaagttgtcatgcatattagaaaatcataatgctaaatgcagcaaggtttaagatcacaacctaataaaacaaggtgaaacgaaatccctcctcaaattatcacatgaatcagaccaatgggaaaacgactgaaatttacctcctcaaatttctcaaaattctgagtatccaactcgctgttaacttctggtatgaaagcagctttcatctgatacaatctttcccatgggagacctctaaaccatggatgtgcctaaagtagagcatatgacgataataattaagcacacagttgagagcaataaagatattgtacatatagaagagagcgcacttttatctcatgggctccttttgttccaagtctctgctcaacattacatagaagtttgctgatgagatccttagcttcaggagaaagctttgcctcttcagggaatttcaagtgacttctccagtttacaatctgcaaatgaagaatagaaaataaaattggatgaaacacatgctcatgaagctacatgagtatttcctgtactggagtaaacaagcttagctgaaagcattgggaaatacagccttccacaaaattttcccactatagggcacttcataaggaaaaaccaaggtcatgcgtgattattggagtccacaaactgtataggctgagctccgaggaccagttgctaccatcatcatctagccactgacccacataataatttgattacatgcaggtcactagtacattactatggcaaatactgcattctgctgtgttgattgtgcgataaaatttggcataaggttgtcttcttgcaagttgggtgaggtttgcttagactgaatatagaaaattccaaacaattaccctctagataacaaattAaaaaaaaactgtgggcaaagtacatgcctttctgcaggttgacattggatcctccgaatagaatggaggataaccaacaagcatttcatacataattgcaccaagggaccacctaagatcaaaataaaatgtgagaacaagaacgaagcacatggatgaggAaaaataacatgacttaacaattatggacaattacaagataagagactaaccagtcacattccattccatatcctttcttcagcagaacctctggagcaatgtaatcaggagtaccaaccgttgaatatgcctgcatgccAaaaaaaaaaaagagtataactaagcatactaccatatattgatgagagcctagaaaactagactcatgtacatattcacttgtcaacgtggcaaaacatagtcagagagcaaaatgtgaaaaattcaagataaacgttaaatgatttttcatataataaataccaagtttcatcaacagctaaataatgcatgatttacacaatccactaaaactttgaagcttagagcatgaaattttttatttccttggaatcgtgcactgtaacactgcacattgtacacaaatgcctgaattaagtctgtccaggaatagcatcatttatgcttctgcacgcaaatattctttattcagaaatattcaatgttcaccgactctaaaaaccttgtcttgaggaagcacaaatgaatcttgaaaatccatcgtagcaaaataattttcatgtggttttatgccaggtaaaagaccaaagtattattagcccagatgttcaaacaaaagctcacaactagtgtgaatttactataaaaactattaaatgcatcaacttgatgtgggcatgtggcatcaggcatcacaacattggcaaggttctatcaaatatcaattagttgattcagtttcagatatgctacttaccagcattcgtcggttcttttgccaatgcgacaattgctcctgctgtgtgcgctttggagcagaagagcttaaccggctgctactatcaggtaaaggcttggtgccctttgtagatgtataatctggctcattcaaatttggaaaattactgctatccaaaggtttacacaatccaaagtcagaaagcttcaagtgaccactgcgatctaacaatagattgtctggtttgatatccctgaaaaaaaaacaccaaggttatctttggaatcatcaaatttcttaccaaaacttgggaacacttatttgataccggtgaatgtagctgtgcttgtgaatagattctattgctaatacggtttctgcaatgtaaaatctggcctcatcttctgtcagtgtgtccttgcgcataagcaaagtcatcatgtcaccaccaggaaggtactccatgatgagatacaagtattcttcatcttgaaaagaatagtagagcttgactataaaagcactatcaacttctgcaagaaggtttctttcagctttgacatgctcaacctgaaatttgtacaaccatgtcaaagcatacgtgtaaatcagaaatagaaactacaaaataatgcagccagaccatacatggtacctggcccctacgaagcatctcagatttcttaagctttttcattgcatatacattcttagacgccttctctctacaaagacgcacctgcataattacaatttacagtgacatcaagagcgatgcacatttaaatggcctcaaaagtaagtacatataattgatgacgattagatatagtagtttcagaactgcatagatctaccacactaagcaaatagacatatttatcctattctcttgttgaaaaggaagaaacataagaatcttctatttaaaaagggttaaatctggaataaaaataataaatacaaagtcttgttggacactaagcacatgccttttttatttgtcttaagtttaatggtagattataggcataaaaagacatgaccctatttctcactcaaataaatttatgtggaagacactgaagattgacgaggcagggcataaaagtctagaccaggtttcatctagacttgaggagggattacatgTtttttttctctcgaatacacaagaaaggagggattacatgtagacttgagcctatgataaagtggtatactatattaggtccttaagcagaacataagctgggaaaatcagagttccttgacttccttccttttattttccttttacaatatgtatcgggagaatgattagaattcagaagacaaatgaatggcctaggaccacttgacgaattgaatgccatcattataggggaccaaagtgtgacccatcaggaaaccagatataacaaataaactaaaaaaactcacattttccctttttcatgaaagcagccctttttcaaacaattaaaaaaactcccattttccccattttttttcagtcagaacacttccatgttaaatggcatcatgcaaaaaggagcagcaaggcagcacatttttctaagcataaaagagatccaaatttatactacagacattgcataagcaaaaaatggcaagtcgaccatgattctaactgaacctactgttaacaggatgtaaatagaaggccacaaagaaatcttagcacatctagtgttcttgtgctccaaaagaaatttgctaaggtcctgtgtatggaattgagatcagaagtacctcgccaaatgcacctcttccaataattgtcaaaagttcaaaatcttcaacccccatcttatgtctctgcaaccgcatatattcggtctcctttttctccaaatgctttagaatattattttgctcttctacaggaacctctgcatcctgtagtttcctctccaacatccagcgcctaaaagcaaatgaacacatcagagaggactggcaacaaaatgtcatccattgaatgggcataaaaggaagtgaattacccataataggaacaaagcaggttgatatgattttctagtgatgcaaaaagaagtaatagtgcgcaaagacaattagaaattcaaattgagtatgagcagaaaaagctcatcatggattattaaaataaactgttagagcataaaaatcaaaagcggtggcgtcaaaatcaaaaaCcctgaaaaggggaaagcaaccaaaatgggtatacccacacaaattgcgtgagttcaatgaaccatttaaaagtcatgtgcgagttacagcttttacaacgtgtgcgagatacaatcttcagaattgagtttttcaagttgggtggtgcaaggctattaaagggattcataaagattcatggaaggggctgaattctttgatcattttagtagcttgggaggtttggaagcatcgcaatgattgtgtgttcaatgaggcctctcccaatgtcacagtggttttgcaagcggtgtcaaatgatagtagcctatggtgcttaactggggctcgtgcgcttcaggagtttctttctaagatatttgcgccgaacgcctaggtagtctaggaggggtttttttttctgggttcagcatcacctcggtgtgatgtgttttgggcttgttgtgacttgcggggctttttggcccctcctttgtatatatgtttctctcttaatgaaatgaaatgcaactgtccagcgtttttgagaaaaagaagccgcttgtgtaaccctacaagataaccaatatactcctttcagtcgcatcaagcatcactttggataaggcaaataaactcatatcactttcaaataactaatttaaatattgatgaataTATTttcttttctaaattaaatttgtttggctgaacaaatctactaggacaacatttatttgttactaacacgagcgctagtcaggaaagctacccaatcaatcaagcttcctttttttggcagtgtcaagggcacacatgcacacacacgcgcaatcttgttcaattacccagaaatgtatttaccattgaaatcacaacctacgaagtgtgatgtgttgtcaggtgccctaccaaacaacaacaaaaggtggcctttgctggtctaatttctcttctttgtatggtacagtacaacggtaataacaaattccgttacatatacgcaaaatgccAaaaatatatttttgcgagaaatacaaccaggcaaaagtagcaagaaatataattatgtcgcctacctttctttcctatcttgcagggacttcatctgggtcttgtaatgattctcaatgtactgttttgccgcggcaaccctctgttttgttgcactagatggcgcgtcatcaattggtggctttcctggatcctttccatgactggcagccaccgctggactcttcgatttgtccctcggctggaacttctggaaccaacttctcgcggaatccatttccactcacaatggcatcatctccgaaaccaacggttttcttatattgaccaatccagcagccaactgcaggcactctgaaacggtcaatccaactaacaattggatcagatatccaaattggcaattctccgtggaacccaatgctgggaacgatgcctctatctgaaatttgaggagataaatattctcaatcagaatcgttacacccagttgccatctgtcacacgactgaatgaaaattcaaataaaatattcacaagttacaagttcctgccatgttttgccccgccatatatgaacctactccatacttgaaatcaaaccacgcctactccatgtttgaaattaaaccatggtgagagctcgaactatatcccatcgaaaggggtagctagaacactgcttacgattgagggagaacacctcaagatctcaatttccaagcgaaacaaaatctcgagagAaaaaaaaaaactctccggcaccggaagtagcagaattcgatccagaaatcacattgcctccacccgggagaCccccagaaaccacccacgaaaagcaacaccagaaaccccccatcgcctcacaaacgcccccaaccccccaactcccaaagctcacaaccacgcgccacagcgacgagtcaccaattcgccaccggaatcccaccaagccgcaatcCAcacacacacacacacacacccctcccTcccctgagcacacagccgcagctcatcccaaagtcccctccacagcacccccgctccaaacaaacaaaaaaaaccttacacaccgcagacagcgaaaccaccggccggagccgcgtcgtccggggaagcgcgcgctcacctcggcggcggcgggaggcaacgcggagcggatctcgggcgggcgacgaggcggcggggcggggggcggcgattggagcaggcaaaagtggggaacgaacgaactgccttaattttattttttttttcctcctcctcttctttctctctctactctactacgactcggcgggttgggttgtcttttcgtgggcaaagcaggcagcgggcagcaaaaggcaaagcgtgtgagagaaaagaaaagagagaagggaagggaagaggagtggagagaggcgtagtcgagagaggctttggggctttggcttggctttgactcgccggaacgaaacttcgtgctgccttccctctctcctcctcctccgcctcgcgtctcccggcccccacc
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| CDS seq | atggattccgcgagaagttggttccagaagttccagccgagggacaaatcgaagagtccagcggtggctgccagtcatggaaaggatccaggaaagccaccaattgatgacgcgccatctagtgcaacaaaacagagggttgccgcggcaaaacagtacattgagaatcattacaagacccagatgaagtccctgcaagataggaaagaaaggcgctggatgttggagaggaaactacaggatgcagaggttcctgtagaagagcaaaataatattctaaagcatttggagaaaaaggagaccgaatatatgcggttgcagagacataagatgggggttgaagattttgaacttttgacaattattggaagaggtgcatttggcgaggtgcgtctttgtagagagaaggcgtctaagaatgtatatgcaatgaaaaagcttaagaaatctgagatgcttcgtaggggccaggttgagcatgtcaaagctgaaagaaaccttcttgcagaagttgatagtgcttttatagtcaagctctactattcttttcaagatgaagaatacttgtatctcatcatggagtaccttcctggtggtgacatgatgactttgcttatgcgcaaggacacactgacagaagatgaggccagattttacattgcagaaaccgtattagcaatagaatctattcacaagcacagctacattcaccgggatatcaaaccagacaatctattgttagatcgcagtggtcacttgaagctttctgactttggattgtgtaaacctttggatagcagtaattttccaaatttgaatgagccagattatacatctacaaagggcaccaagcctttacctgatagtagcagccggttaagctcttctgctccaaagcgcacacagcaggagcaattgtcgcattggcaaaagaaccgacgaatgctggcatattcaacggttggtactcctgattacattgctccagaggttctgctgaagaaaggatatggaatggaatgtgactggtggtcccttggtgcaattatgtatgaaatgcttgttggttatcctccattctattcggaggatccaatgtcaacctgcagaaagattgtaaactggagaagtcacttgaaattccctgaagaggcaaagctttctcctgaagctaaggatctcatcagcaaacttctatgtaatgttgagcagagacttggaacaaaaggagcccatgagataaaagcacatccatggtttagaggtctcccatgggaaagattgtatcagatgaaagctgctttcataccagaagttaacagcgagttggatactcagaattttgagaaatttgaggagaccggagcacaaattcaaagttcatctaagtcaggtccatggagaaagatgcttccgtccaaggatgcaaactttgttggctatacatataagaattttgaaattgtaaatgatgatgaggttgcaggaattgctgagttgaagaagaagagttccaagtcaaagcggccaactatcaagacattatttgagagcatggatgaagatgagcctgttcaaggaagtttcttaaatatgttgccccgtaaggaggggcaaccttcatctcactccaccattccaccagaacaataccaacctcgacataaatag
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| Protein seq | MDSARSWFQKFQPRDKSKSPAVAASHGKDPGKPPIDDAPSSATKQRVAAAKQYIENHYKTQMKSLQDRKERRWMLERKLQDAEVPVEEQNNILKHLEKKETEYMRLQRHKMGVEDFELLTIIGRGAFGEVRLCREKASKNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAFIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYIAETVLAIESIHKHSYIHRDIKPDNLLLDRSGHLKLSDFGLCKPLDSSNFPNLNEPDYTSTKGTKPLPDSSSRLSSSAPKRTQQEQLSHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSEDPMSTCRKIVNWRSHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGAHEIKAHPWFRGLPWERLYQMKAAFIPEVNSELDTQNFEKFEETGAQIQSSSKSGPWRKMLPSKDANFVGYTYKNFEIVNDDEVAGIAELKKKSSKSKRPTIKTLFESMDEDEPVQGSFLNMLPRKEGQPSSHSTIPPEQYQPRHK |
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| Function | Serine/threonine-protein kinase CBK1 [UniProtKB/Swiss-Prot:Q6TGC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0022930 | OsLima_05g0022930.02 | Chr05 | 26486451 | 26494333 | - | NAM | ||
| CDS seq | atggattccgcgagaagttggttccagaagttccagccgagggacaaatcgaagagtccagcggtggctgccagtcatggaaaggatccaggaaagccaccaattgatgacgcgccatctagtgcaacaaaacagagggttgccgcggcaaaacagtacattgagaatcattacaagacccagatgaagtccctgcaagataggaaagaaaggcgctggatgttggagaggaaactacaggatgcagaggttcctgtagaagagcaaaataatattctaaagcatttggagaaaaaggagaccgaatatatgcggttgcagagacataagatgggggttgaagattttgaacttttgacaattattggaagaggtgcatttggcgaggtgcgtctttgtagagagaaggcgtctaagaatgtatatgcaatgaaaaagcttaagaaatctgagatgcttcgtaggggccaggttgagcatgtcaaagctgaaagaaaccttcttgcagaagttgatagtgcttttatagtcaagctctactattcttttcaagatgaagaatacttgtatctcatcatggagtaccttcctggtggtgacatgatgactttgcttatgcgcaaggacacactgacagaagatgaggccagattttacattgcagaaaccgtattagcaatagaatctattcacaagcacagctacattcaccgggatatcaaaccagacaatctattgttagatcgcagtggtcacttgaagctttctgactttggattgtgtaaacctttggatagcagtaattttccaaatttgaatgagccagattatacatctacaaagggcaccaagcctttacctgatagtagcagccggttaagctcttctgctccaaagcgcacacagcaggagcaattgtcgcattggcaaaagaaccgacgaatgctggcatattcaacggttggtactcctgattacattgctccagaggttctgctgaagaaaggatatggaatggaatgtgactggtggtcccttggtgcaattatgtatgaaatgcttgttggttatcctccattctattcggaggatccaatgtcaacctgcagaaagattgtaaactggagaagtcacttgaaattccctgaagaggcaaagctttctcctgaagctaaggatctcatcagcaaacttctatgtaatgttgagcagagacttggaacaaaaggagcccatgagataaaagcacatccatggtttagaggtctcccatgggaaagattgtatcagatgaaagctgctttcataccagaagttaacagcgagttggatactcagaattttgagaaatttgaggagaccggagcacaaattcaaagttcatctaagtcaggtccatggagaaagatgcttccgtccaaggatgcaaactttgttggctatacatataagaattttgaaattgtaaatgatgatgaggttgcaggaattgctgagttgaagaagaagagttccaagtcaaagcggccaactatcaagacattatttgagagcatggatgaagatgagcctgttcaaggaagtttcttaaatatgttgccccgtaaggaggggcaaccttcatctcactccaccattccaccagaacaataccaacctcgacataaatag
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| Protein seq | MDSARSWFQKFQPRDKSKSPAVAASHGKDPGKPPIDDAPSSATKQRVAAAKQYIENHYKTQMKSLQDRKERRWMLERKLQDAEVPVEEQNNILKHLEKKETEYMRLQRHKMGVEDFELLTIIGRGAFGEVRLCREKASKNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAFIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYIAETVLAIESIHKHSYIHRDIKPDNLLLDRSGHLKLSDFGLCKPLDSSNFPNLNEPDYTSTKGTKPLPDSSSRLSSSAPKRTQQEQLSHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSEDPMSTCRKIVNWRSHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGAHEIKAHPWFRGLPWERLYQMKAAFIPEVNSELDTQNFEKFEETGAQIQSSSKSGPWRKMLPSKDANFVGYTYKNFEIVNDDEVAGIAELKKKSSKSKRPTIKTLFESMDEDEPVQGSFLNMLPRKEGQPSSHSTIPPEQYQPRHK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0022930 | OsLima_05g0022930.03 | Chr05 | 26486451 | 26494333 | - | NAM | ||
| CDS seq | atggattccgcgagaagttggttccagaagttccagccgagggacaaatcgaagagtccagcggtggctgccagtcatggaaaggatccaggaaagccaccaattgatgacgcgccatctagtgcaacaaaacagagggttgccgcggcaaaacagtacattgagaatcattacaagacccagatgaagtccctgcaagataggaaagaaaggcgctggatgttggagaggaaactacaggatgcagaggttcctgtagaagagcaaaataatattctaaagcatttggagaaaaaggagaccgaatatatgcggttgcagagacataagatgggggttgaagattttgaacttttgacaattattggaagaggtgcatttggcgaggtgcgtctttgtagagagaaggcgtctaagaatgtatatgcaatgaaaaagcttaagaaatctgagatgcttcgtaggggccaggttgagcatgtcaaagctgaaagaaaccttcttgcagaagttgatagtgcttttatagtcaagctctactattcttttcaagatgaagaatacttgtatctcatcatggagtaccttcctggtggtgacatgatgactttgcttatgcgcaaggacacactgacagaagatgaggccagattttacattgcagaaaccgtattagcaatagaatctattcacaagcacagctacattcaccgggatatcaaaccagacaatctattgttagatcgcagtggtcacttgaagctttctgactttggattgtgtaaacctttggatagcagtaattttccaaatttgaatgagccagattatacatctacaaagggcaccaagcctttacctgatagtagcagccggttaagctcttctgctccaaagcgcacacagcaggagcaattgtcgcattggcaaaagaaccgacgaatgctggcatattcaacggttggtactcctgattacattgctccagaggttctgctgaagaaaggatatggaatggaatgtgactggtggtcccttggtgcaattatgtatgaaatgcttgttggttatcctccattctattcggaggatccaatgtcaacctgcagaaagattgtaaactggagaagtcacttgaaattccctgaagaggcaaagctttctcctgaagctaaggatctcatcagcaaacttctatgtaatgttgagcagagacttggaacaaaaggagcccatgagataaaagcacatccatggtttagaggtctcccatgggaaagattgtatcagatgaaagctgctttcataccagaagttaacagcgagttggatactcagaattttgagaaatttgaggagaccggagcacaaattcaaagttcatctaagtcaggtccatggagaaagatgcttccgtccaaggatgcaaactttgttggctatacatataagaattttgaaattgtaaatgatgatgaggttgcaggaattgctgagttgaagaagaagagttccaagtcaaagcggccaactatcaagacattatttgagagcatggatgaagatgagcctgttcaaggaagtttcttaaatatgttgccccgtaaggaggggcaaccttcatctcactccaccattccaccagaacaataccaacctcgacataaatag
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| Protein seq | MDSARSWFQKFQPRDKSKSPAVAASHGKDPGKPPIDDAPSSATKQRVAAAKQYIENHYKTQMKSLQDRKERRWMLERKLQDAEVPVEEQNNILKHLEKKETEYMRLQRHKMGVEDFELLTIIGRGAFGEVRLCREKASKNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAFIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYIAETVLAIESIHKHSYIHRDIKPDNLLLDRSGHLKLSDFGLCKPLDSSNFPNLNEPDYTSTKGTKPLPDSSSRLSSSAPKRTQQEQLSHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSEDPMSTCRKIVNWRSHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGAHEIKAHPWFRGLPWERLYQMKAAFIPEVNSELDTQNFEKFEETGAQIQSSSKSGPWRKMLPSKDANFVGYTYKNFEIVNDDEVAGIAELKKKSSKSKRPTIKTLFESMDEDEPVQGSFLNMLPRKEGQPSSHSTIPPEQYQPRHK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0022930 | OsLima_05g0022930.01 | Chr05 | 26486451 | 26494333 | - | NAM | ||
| CDS seq | atggattccgcgagaagttggttccagaagttccagccgagggacaaatcgaagagtccagcggtggctgccagtcatggaaaggatccaggaaagccaccaattgatgacgcgccatctagtgcaacaaaacagagggttgccgcggcaaaacagtacattgagaatcattacaagacccagatgaagtccctgcaagataggaaagaaaggcgctggatgttggagaggaaactacaggatgcagaggttcctgtagaagagcaaaataatattctaaagcatttggagaaaaaggagaccgaatatatgcggttgcagagacataagatgggggttgaagattttgaacttttgacaattattggaagaggtgcatttggcgaggtgcgtctttgtagagagaaggcgtctaagaatgtatatgcaatgaaaaagcttaagaaatctgagatgcttcgtaggggccaggttgagcatgtcaaagctgaaagaaaccttcttgcagaagttgatagtgcttttatagtcaagctctactattcttttcaagatgaagaatacttgtatctcatcatggagtaccttcctggtggtgacatgatgactttgcttatgcgcaaggacacactgacagaagatgaggccagattttacattgcagaaaccgtattagcaatagaatctattcacaagcacagctacattcaccgggatatcaaaccagacaatctattgttagatcgcagtggtcacttgaagctttctgactttggattgtgtaaacctttggatagcagtaattttccaaatttgaatgagccagattatacatctacaaagggcaccaagcctttacctgatagtagcagccggttaagctcttctgctccaaagcgcacacagcaggagcaattgtcgcattggcaaaagaaccgacgaatgctggcatattcaacggttggtactcctgattacattgctccagaggttctgctgaagaaaggatatggaatggaatgtgactggtggtcccttggtgcaattatgtatgaaatgcttgttggttatcctccattctattcggaggatccaatgtcaacctgcagaaagattgtaaactggagaagtcacttgaaattccctgaagaggcaaagctttctcctgaagctaaggatctcatcagcaaacttctatgtaatgttgagcagagacttggaacaaaaggagcccatgagataaaagcacatccatggtttagaggtctcccatgggaaagattgtatcagatgaaagctgctttcataccagaagttaacagcgagttggatactcagaattttgagaaatttgaggagaccggagcacaaattcaaagttcatctaagtcaggtccatggagaaagatgcttccgtccaaggatgcaaactttgttggctatacatataagaattttgaaattgtaaatgatgatgaggttgcaggaattgctgagttgaagaagaagagttccaagtcaaagcggccaactatcaagacattatttgagagcatggatgaagatgagcctgttcaaggaagtttcttaaatatgttgccccgtaaggaggggcaaccttcatctcactccaccattccaccagaacaataccaacctcgacataaatag
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| Protein seq | MDSARSWFQKFQPRDKSKSPAVAASHGKDPGKPPIDDAPSSATKQRVAAAKQYIENHYKTQMKSLQDRKERRWMLERKLQDAEVPVEEQNNILKHLEKKETEYMRLQRHKMGVEDFELLTIIGRGAFGEVRLCREKASKNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAFIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYIAETVLAIESIHKHSYIHRDIKPDNLLLDRSGHLKLSDFGLCKPLDSSNFPNLNEPDYTSTKGTKPLPDSSSRLSSSAPKRTQQEQLSHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSEDPMSTCRKIVNWRSHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGAHEIKAHPWFRGLPWERLYQMKAAFIPEVNSELDTQNFEKFEETGAQIQSSSKSGPWRKMLPSKDANFVGYTYKNFEIVNDDEVAGIAELKKKSSKSKRPTIKTLFESMDEDEPVQGSFLNMLPRKEGQPSSHSTIPPEQYQPRHK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0022930 | OsLima_05g0022930.04 | Chr05 | 26486353 | 26494072 | - | IsoSeq | ||
| CDS seq | atgctttctcttctcaaattcttcatacaaaaatccctcctctgtccaaagagtggtgtttgctgtacgcggcgatgtttgtttggttcgccgtgtgtttgggttacagcttcggtgatgatgggtctcaggttacagctagtgtatacttgctaccat |
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| Protein seq | MLSLLKFFIQKSLLCPKSGVCCTRRCLFGSPCVWVTASVMMGLRLQLVYTCYH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr05 | 26493259 | 26493947 | - | OsLima_05g0022930.02 | OsLima_05g0022930.02,OsLima_05g0022930.04,OsLima_05g0022930.01 | All |
| A5 | Chr05 | 26493259 | 26493891 | - | OsLima_05g0022930.02 | OsLima_05g0022930.03,OsLima_05g0022930.02 | All |
| A5 | Chr05 | 26493259 | 26493947 | - | OsLima_05g0022930.03 | OsLima_05g0022930.03,OsLima_05g0022930.01,OsLima_05g0022930.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.348117 | 0.890898 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0511400 | RBH | 3.239040 | 4.340180 | 10.345805 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43570 | RBH | 1.996049 | 2.607550 | 2.378313 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0511400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023210 | RBH | 1.171047 | 41.541752 | 13.678745 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023160 | RBH | 0.549385 | 9.059267 | 6.378303 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023100 | RBH | 2.149153 | 47.250984 | 24.153210 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023090 | RBH | 0.570283 | 0.915609 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023170 | RBH | 24.681406 | 42.673523 | 43.810699 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0392700 | RBH | 9.23893 | 39.029457 | 18.2336155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022760 | RBH | 0.457424 | 4.039007 | 3.936470 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0402300 | RBH | 12.0781365 | 41.0456235 | 18.307914 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033290 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022830 | RBH | 1.311344 | 29.119925 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023000 | RBH | 9.374132 | 87.136024 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023020 | RBH | 2.261147 | 3.970518 | 2.904835 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023030 | RBH | 0.803620 | 30.998808 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022470 | RBH | 1.352110 | 11.866527 | 8.018888 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022880 | RBH | 3.684799 | 43.916302 | 21.258427 |
