Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0022220 | OGI:05025050 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:25701196-25703847 | ||||||||
| Gene Symbol | RLCK189, OsRLCK189, OsSTA156 | ||||||||||
| DNA seq | TATTAAACCTGAAAATTTTAATGGACATGCCTAATCAAAACACACAAGTCAACCACATTAAAGAACAAAAACCTGTTGTTAATTCTTTCCTATAGGTGCTATACATCAAAAACAGGGTGAGTGATATTTTGAAAGGAGAAAGGAGAGGGTGAGTGATATTAATTTTGCAGCTCTAACCACATCTAATCATGGTTGATTAATCATCTCCCTCCCCAGAAGCCATTTTCAGCTACTTCTTGTTGTTCCCCCTAAACCTGCTCTTCACCACCCTCGTCGCTGTCGTTGTCACCTCCTTCAGCTTCTTTCTGGCTACTCTCTCTGTCTAAATTCGGGGCTTTGATCGGCAGAGGCTCAACGTCATCAGGAGGATCATAGtttgggtcagctagaaacgtgagcgccgtcaccacgtcgctgatcagaggccggctgctcgcctcttcttgcaagcacatcgatgagattgccagtgcctggtacagccctttcagtgggaacttcatgtccagcagtggatcagccatcttcacgaacttcttcttgtccctgaacagtggcgctgcctgcatttcagacatacagtataagatcaccatcttgattctgaactgaacgagaaattttcattgactgaattctgaatctctgatctttttttcacgaacacgtcaatatattagaaaaagagcagcatacaactgtggcacactgaggcgaatataaaggaatgttacccagtgaacaagaatctgctcgcgagtgggcttggtggtgtcgatggctcggcggccggtgatgatctcgaggaggacgacgccgaagctgtagatgtcggacatcttggtgagcttgccggtcatggcgtactcGggggcgcagtagccgtacgtgcccatcaccctggtggtgacgtggctcttgtcgccgacggggcccagcttcgccagcccgaaatccgacagcttcgcgttgaaccCGccgtcgaggaggatgttggacgccttgagatcccggtagatcaccggcgggttggctatctcgtgcaggtactccatccctctcgccgcgcccaccgcgatcttcatccgcgtgtgccatgacagcggcgacgagttcggtgtcagatctgcacaaaaattcagaaccaaaaaaatcatgaactttagctcaaacccgtctgcattttgctatgcagatgtaatgatagttactatacctaggagatgatcttgcaatgaaccgagtggcatgtactcgtagaccaggattctctggtcgcactcggtgctgtaaccgagcaaggtgacgaggttggggtgatggagaaggctaagcatcagcacctcgacgaggaactcgcggttcccctgcaatccatccttgtccagctgcttaaccgctatgacctgtatgaacatggacacaaattcacatcatatacatgctactgatgcattcatcagtcatcactgaatctttcagggtgtcaggttgatgaagagactgaggaaggacagttcacagttaaattccgttcaaaaaaaaaaaacagttcacagttaaatggtgcttacttccttggtgtctgggatgaatcctttgtagactctcccgaatccaccttcaccaagcaggttttccgggctgaaagagccggttgcatcggccagctgacggaacgtgaatactctgcttggaatgttgtggttgccgatccgtagtatctctcctgccgctgccctgttcctggtactatctgcacgaacaaagtttaggatcttgttagcttatcagccgtaaccaaattttaaatttcgacactccaattttagaattgattttgaagtttcttttttcaatgtagttttttttcaaccttacctaacacagttaataatacaaatataaaggttttactcataaattatttttagttgctttcctttatttttctctgacttataagtcatagctcaaaggtgaaactaggtcaagagcatggtaattttcagatgaattatacatatcacattttcgcctttataagatataaaaggagatatttttgctatttcggcacgaagaaatcaggaaaagaaaaaagggaagaaatggtagtatattttattactctcgagggagatctccttgacgaggctggccaagccggtcggttgggtcttgcccttcttcttcttccaattcttcttggtcccccacttgttcttctccagctccgggctcgtcgcggcgctcttcctcttcttcatcgtctccagcgtcagcggctcctccgcctcccgcgcggccttgccgaagacgccgcgcaccacccacttccgcttcttcctcttcttcgcgtccgacgccgccgtgtcctgcgccgacgtcgtcgcccccccgccgccgccgcagaagccgcggatccacgagcagcagctggcgcagccgccgcgcacccaggagcagcagcagcacgacctgctcgccgagctcagcagccccatcgccggatcgacgcgagagtgggcgagcaccctcgtgccgacccccgcgcgccgccgccgacgccgacgacgacgccgcggggtgacgatctcctcccgcggcgagaagaacacggcatgcaaggcgctggaaaaataaaaatga
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| CDS seq | atggggctgctgagctcggcgagcaggtcgtgctgctgctgctcctgggtgcgcggcggctgcgccagctgctgctcgtggatccgcggcttctgcggcggcggcgggggggcgacgacgtcggcgcaggacacggcggcgtcggacgcgaagaagaggaagaagcggaagtgggtggtgcgcggcgtcttcggcaaggccgcgcgggaggcggaggagccgctgacgctggagacgatgaagaagaggaagagcgccgcgacgagcccggagctggagaagaacaagtgggggaccaagaagaattggaagaagaagaagggcaagacccaaccgaccggcttggccagcctcgtcaaggagatctccctcgagagcgaaaatctggccgatgcaaccggctctttcagcccggaaaacctgcttggtgaaggtggattcgggagagtctacaaaggattcatcccagacaccaaggaagtcatagcggttaagcagctggacaaggatggattgcaggggaaccgcgagttcctcgtcgaggtgctgatgcttagccttctccatcaccccaacctcgtcaccttgctcggttacagcaccgagtgcgaccagagaatcctggtctacgagtacatgccactcgatctgacaccgaactcgtcgccgctgtcatggcacacgcggatgaagatcgcggtgggcgcggcgagagggatggagtacctgcacgagatagccaacccgccggtgatctaccgggatctcaaggcgtccaacatcctcctcgacggCGggttcaacgcgaagctgtcggatttcgggctggcgaagctgggccccgtcggcgacaagagccacgtcaccaccagggtgatgggcacgtacggctactgcgccccCgagtacgccatgaccggcaagctcaccaagatgtccgacatctacagcttcggcgtcgtcctcctcgagatcatcaccggccgccgagccatcgacaccaccaagcccactcgcgagcagattcttgttcactgggcagcgccactgttcagggacaagaagaagttcgtgaagatggctgatccactgctggacatgaagttcccactgaaagggctgtaccaggcactggcaatctcatcgatgtgcttgcaagaagaggcgagcagccggcctctgatcagcgacgtggtgacggcgctcacgtttctagctgacccaaaCTATGATCCTCCTGATGACGTTGAGCCTCTGCCGATCAAAGCCCCGAATTTAGACAGAGAGAGTAGCCAGAAAGAAGCTGAAGGAGGTGACAACGACAGCGACGAGGGTGGTGAAGAGCAGGTTTAG
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| Protein seq | MGLLSSASRSCCCCSWVRGGCASCCSWIRGFCGGGGGATTSAQDTAASDAKKRKKRKWVVRGVFGKAAREAEEPLTLETMKKRKSAATSPELEKNKWGTKKNWKKKKGKTQPTGLASLVKEISLESENLADATGSFSPENLLGEGGFGRVYKGFIPDTKEVIAVKQLDKDGLQGNREFLVEVLMLSLLHHPNLVTLLGYSTECDQRILVYEYMPLDLTPNSSPLSWHTRMKIAVGAARGMEYLHEIANPPVIYRDLKASNILLDGGFNAKLSDFGLAKLGPVGDKSHVTTRVMGTYGYCAPEYAMTGKLTKMSDIYSFGVVLLEIITGRRAIDTTKPTREQILVHWAAPLFRDKKKFVKMADPLLDMKFPLKGLYQALAISSMCLQEEASSRPLISDVVTALTFLADPNYDPPDDVEPLPIKAPNLDRESSQKEAEGGDNDSDEGGEEQV |
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| Function | Serine/threonine-protein kinase PBL27 [UniProtKB/Swiss-Prot:Q1PDV6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0022220 | OsLima_05g0022220.01 | Chr05 | 25701196 | 25703847 | - | NAM | ||
| CDS seq | atggggctgctgagctcggcgagcaggtcgtgctgctgctgctcctgggtgcgcggcggctgcgccagctgctgctcgtggatccgcggcttctgcggcggcggcgggggggcgacgacgtcggcgcaggacacggcggcgtcggacgcgaagaagaggaagaagcggaagtgggtggtgcgcggcgtcttcggcaaggccgcgcgggaggcggaggagccgctgacgctggagacgatgaagaagaggaagagcgccgcgacgagcccggagctggagaagaacaagtgggggaccaagaagaattggaagaagaagaagggcaagacccaaccgaccggcttggccagcctcgtcaaggagatctccctcgagagcgaaaatctggccgatgcaaccggctctttcagcccggaaaacctgcttggtgaaggtggattcgggagagtctacaaaggattcatcccagacaccaaggaagtcatagcggttaagcagctggacaaggatggattgcaggggaaccgcgagttcctcgtcgaggtgctgatgcttagccttctccatcaccccaacctcgtcaccttgctcggttacagcaccgagtgcgaccagagaatcctggtctacgagtacatgccactcgatctgacaccgaactcgtcgccgctgtcatggcacacgcggatgaagatcgcggtgggcgcggcgagagggatggagtacctgcacgagatagccaacccgccggtgatctaccgggatctcaaggcgtccaacatcctcctcgacggCGggttcaacgcgaagctgtcggatttcgggctggcgaagctgggccccgtcggcgacaagagccacgtcaccaccagggtgatgggcacgtacggctactgcgccccCgagtacgccatgaccggcaagctcaccaagatgtccgacatctacagcttcggcgtcgtcctcctcgagatcatcaccggccgccgagccatcgacaccaccaagcccactcgcgagcagattcttgttcactgggcagcgccactgttcagggacaagaagaagttcgtgaagatggctgatccactgctggacatgaagttcccactgaaagggctgtaccaggcactggcaatctcatcgatgtgcttgcaagaagaggcgagcagccggcctctgatcagcgacgtggtgacggcgctcacgtttctagctgacccaaaCTATGATCCTCCTGATGACGTTGAGCCTCTGCCGATCAAAGCCCCGAATTTAGACAGAGAGAGTAGCCAGAAAGAAGCTGAAGGAGGTGACAACGACAGCGACGAGGGTGGTGAAGAGCAGGTTTAG
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| Protein seq | MGLLSSASRSCCCCSWVRGGCASCCSWIRGFCGGGGGATTSAQDTAASDAKKRKKRKWVVRGVFGKAAREAEEPLTLETMKKRKSAATSPELEKNKWGTKKNWKKKKGKTQPTGLASLVKEISLESENLADATGSFSPENLLGEGGFGRVYKGFIPDTKEVIAVKQLDKDGLQGNREFLVEVLMLSLLHHPNLVTLLGYSTECDQRILVYEYMPLDLTPNSSPLSWHTRMKIAVGAARGMEYLHEIANPPVIYRDLKASNILLDGGFNAKLSDFGLAKLGPVGDKSHVTTRVMGTYGYCAPEYAMTGKLTKMSDIYSFGVVLLEIITGRRAIDTTKPTREQILVHWAAPLFRDKKKFVKMADPLLDMKFPLKGLYQALAISSMCLQEEASSRPLISDVVTALTFLADPNYDPPDDVEPLPIKAPNLDRESSQKEAEGGDNDSDEGGEEQV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0498900 | RBH | 0.000000 | 0.0 | 0.653512 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41950 | RBH | 0.000000 | 0.0 | 0.162893 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0498900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022440 | RBH | 0.0 | 0.0 | 2.150751 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022380 | RBH | 0.0 | 0.0 | 0.695837 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022320 | RBH | 0.0 | 0.0 | 2.556526 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022380 | RBH | 0.856190 | 0.0 | 4.926941 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0274300 | SBH | 11.4612945 | 25.314035 | 42.091833 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021970 | RBH | 0.0 | 0.0 | 1.587317 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0390600 | RBH | 0.2183605 | 0.087238 | 0.6041525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022140 | RBH | 0.096529 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022330 | RBH | 0.0 | 0.0 | 0.197338 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021750 | RBH | 0.0 | 0.0 | 0.140956 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022160 | RBH | 0.0 | 0.000000 | 3.051026 |
