Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0021690 | OGI:05065400 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:25305375-25309695 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agcctagcaaaatgttggcagcaaaccaataactgacttcgccaaaattttgtcagtaccccgatttagcatacaaatgttttggtaaggttttacattgatcgtaaaccaaaccagaccttactttgtcaaacgtcaaaacaaaagctagaacctaacccttcattttaatcattactcctttttcttgattctgagcagcacttagcagtagaagagagaaggccaaattctaactatgaatctaacacaaatcattcacatataacttcagggaggcacaccctcttcacagcaaatgtattgcgtgtaaatgtgtactctttctggctacatgattcaactcagggcaatttcccttcaaaagaaggaaaattgcttgctagggcttttaggacatcctgataattacaagagctgtatgatgatgatgaatactacagtgacaacaccacctggccgtggtgaaggaatcagatgtggatccaaagatccttacaaggctcgctctgttgttaagaggatatatattcacatgcgatcggcccgcagtggaggttaacatcttggatcaagaatttccgatgagtgaggttttgctttatgatttgttcagaccagggtcagctttaaattcatccactcggaatgcagcctcttgatcccaaggaccaatcaaatgggattcaaaatctgactgtgtcacatcccgtaccgaatcaggtgacaggttgtccatcttgggtttctttggagatggctgcatgctatctgggtagtcatctaagcttggtggtgaatgcggtagcttctgctcctcacaagctttgagtgatccaccgagcttttgctgctcctctatgatcatctgcaagtacttcccttgtgcttcaattctcagctgcagctgcctttgcacctaaggaaattgcaatggttctcatattaactgaaagagatttaaggcttaaccttgacagggaaaaaaagacaaactggaaaaatactcaaggtgtaactccaatttgctagaggaaattttggtttgtcgacaagttaaatgatgcAaaaaagattcccaaggtgacactagttaacatcttataacagcagacctcaagttgttcatggagtcgcttctggacctccatttgcatcttcaaagcttcattgatttgcattcctctgcaatgtaagcaataatatttatatcaactatgtaaatctaagaagtttgtaccgaccaacacacaagattacacaactataggatatgaacttgtgtacaagtcactgagtaagatcaagtttgtatcaaccagcatacaagataacactactacaggatatgaacttgtgtacaagtcactgagtaagatcacttacggtgcagaatctgtgttagagagggaatcgctagaatccttcttttcgtcttttgagcctacataagatgccaacagtaacattcaaaaccaaaaatagccatctagttccagatgtagcaaggtggaagggaaaggtaagttaagagatagtatgtgaagcatagaagatgcgtaccttcagcaggagattctggtatgtactttgcaaggcgatatttctgcataagcacaaagaaagacagtattagctacaagcctacaatggaactcttaatacctgtttcattaaagagaaaattcacctgcaaatggctcttcacatgataaattgtgatcccaggaacacccattacagtgagaacccctttaggtgttgctcctgaaacaatgataatatgcagaaaggcgtgttagatacatcgtacttcttgtattttaaaataataaactgatcaatcgcatagtaacatgctagcttaccactagacaagttagcatgtaatagagccagacacatgtgcaccacacaatattcaaagcagtttccaattattgacatggtttgcagtttcaaggcatgaacatttcccaatgtgattgaacttaatagaatggacgaccacagctataaggcGagatatacataaaaataacaagaatcctctgaagtatgtgcatgctatcctcttatccttttcaattttaatctgacagatttctgttgtgaatgagcccatgtgatgtaaactgatactaaatattcagatgtccagcttgttaaATataacattaatttgcaagattttatctatgtaaattactgatagggcttcaaaattattgatgatggagagatacatgagacgtaaaaaaaggaaattgacaagtgaattgtagaccgcagtttaaacattgtattaagttcaaccacaacgactaatactcgacagagaatacccactatcaggtccaccaagctgagcaatagcatccacaaagcggttatggagatctgaggtccaacgtagccgttgtttcccactccctgcaggattagcagggctgcccatgtttgacccgccaaaagctccaatattactcatatgatcgttactctgtgtactctgcggtccaaagggtacagagaacttctttgcatggtacatcatgagaatgctgcaacaattgtaaggagacgtcataaatatatgtagtgccaagtaaagataccaaatttatcatgaggaaaatccagagtcaagtgactaaaacgtagcacatcacatgtagtaaattgtcagaacactcactggttgttctataactagcataattgtatggtggagtagtagagtttctcaacaggagcctcgattccttgctttacaaaaatgataaaacaataagcactacgaaataatgatcagaatagcaatcaaagaagggtaaactaaattcaaacaccaaaaccaacctggaagagcatattttgctctattactagcctaacaaaattatggaaaaaaaaacaatgctattcgcattaagaaaaacatgaaagacaatattaacgcatataaccgaaggatcattatgtgctatccaaaacaacacgcttaatgccagcagttcaactctaaaggccattgctgcatacccgtatcaaaacaataactcaaagtcagcttaattccacatggcaggcacacatagtttttgcaagcaacgactgcagagacacacacacacACCCAGCTACTCCACCTTCCATGAGCAGAGATAGGGCAAAAAAATAAAACTGTTAAGCATCTGCTACTATCAGGAAGCAGAAAACTCTGAATTTACAAAAATAAACAGACGATATCGTCAGAGACTCTCCAGTTAAGCCTACAAATCATTGACCACCCAAGAAGCCAAGAGCAAGCACCATCTACACATCCATCGAAACTACACAACCAATTATCACTGATACGTTCTTCAACAAACATAAGAATGAATTCTGCACACATCACTGGAGACATAAACTGGACCGGACCATGGCCACAAACCCGGCGCAGATACCAGGATCAGGATCAATACAAAACATCAAACCAACCCTTCCAGTAATCAAGTTGACACAGCCATCATCATAAACCCATGGCCATCACACAACTACAGAAACATAAAGAGATCCCAAAATAAACCAAGGCATTTCCGCCACATCCAGAACGCATTTTTTTCACCAGTCCATACCTTATCAACTCACCAAAAAAAAAAAAAGAAACGCTAGAAAATTCATCCAAGCTCATTAATGATTAAACTCGCATGCTAACCTAAGCACAGACTCCAACCTCGTGCTCCGGCATCCAATCCCACCCCCCACCCCGAATTCCGCCTCCCAGGATCCCCCCCCCCCCCTCCTCTTCCTCCGCCGAACAAACCCACCACCACCGACCAGGGGCGCGCCGAACCAAACCGCCGCAACGGGAGCTCACAGAGGCGAGAGAGGGGCTTACCTTACCGGCACGGCGAGGCAGCGATCCGCCGCCGGCCGCCGCCACCACCACCAAAAAGCGGGCAGCGCAGGGGAACCAGATGCTCTCCTCTGCTGCTTCCGCTTCCGCCGCCGTCCGAGGgggggattcccagttgggaattgggggggtcaaaaagggaaggaaggaggcgacgcgaggagaggagaggaggggaaagcggcggggggcggtggtgtccggcgaaagcgacgcgcggggaggggagagcgagagagagaggagagggaggccttgggatttggggggattttttttttctctttctttctttgctcgcttcgcttcacactctctttttctcgtcgtctcgttgtgttggttagggttttcgcgccggcgggaggggagggggaaggaggagtgcacggtgggccgggtccacggggtggggcccat
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| CDS seq | atgatgtaccatgcaaagaagttctctgtaccctttggaccgcagagtacacagagtaacgatcatatgagtaatattggagcttttggcgggtcaaacatgggcagccctgctaatcctgcagggagtgggaaacaacggctacgttggacctcagatctccataaccgctttgtggatgctattgctcagcttggtggacctgatagagcaacacctaaaggggttctcactgtaatgggtgttcctgggatcacaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaagtacataccagaatctcctgctgaaggctcaaaagacgaaaagaaggattctagcgattccctctctaacacagattctgcaccaggaatgcaaatcaatgaagctttgaagatgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagctgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagcaaaagctcggtggatcactcaaagcttgtgaggagcagaagctaccgcattcaccaccaagcttagatgactacccagatagcatgcagccatctccaaagaaacccaagatggacaacctgtcacctgattcggtacgggatgtgacacagtcagattttgaatcccatttgattggtccttgggatcaagaggctgcattccgagtggatgaatttaaagctgaccctggtctgaacaaatcataa
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| Protein seq | MMYHAKKFSVPFGPQSTQSNDHMSNIGAFGGSNMGSPANPAGSGKQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRLAKYIPESPAEGSKDEKKDSSDSLSNTDSAPGMQINEALKMQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQMIIEEQQKLGGSLKACEEQKLPHSPPSLDDYPDSMQPSPKKPKMDNLSPDSVRDVTQSDFESHLIGPWDQEAAFRVDEFKADPGLNKS |
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| Function | Myb family transcription factor PHL7 [UniProtKB/Swiss-Prot:Q9SJW0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0021690 | OsLima_05g0021690.01 | Chr05 | 25305375 | 25309695 | - | NAM | ||
| CDS seq | atgatgtaccatgcaaagaagttctctgtaccctttggaccgcagagtacacagagtaacgatcatatgagtaatattggagcttttggcgggtcaaacatgggcagccctgctaatcctgcagggagtgggaaacaacggctacgttggacctcagatctccataaccgctttgtggatgctattgctcagcttggtggacctgatagagcaacacctaaaggggttctcactgtaatgggtgttcctgggatcacaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaagtacataccagaatctcctgctgaaggctcaaaagacgaaaagaaggattctagcgattccctctctaacacagattctgcaccaggaatgcaaatcaatgaagctttgaagatgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagctgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagcaaaagctcggtggatcactcaaagcttgtgaggagcagaagctaccgcattcaccaccaagcttagatgactacccagatagcatgcagccatctccaaagaaacccaagatggacaacctgtcacctgattcggtacgggatgtgacacagtcagattttgaatcccatttgattggtccttgggatcaagaggctgcattccgagtggatgaatttaaagctgaccctggtctgaacaaatcataa
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| Protein seq | MMYHAKKFSVPFGPQSTQSNDHMSNIGAFGGSNMGSPANPAGSGKQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRLAKYIPESPAEGSKDEKKDSSDSLSNTDSAPGMQINEALKMQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQMIIEEQQKLGGSLKACEEQKLPHSPPSLDDYPDSMQPSPKKPKMDNLSPDSVRDVTQSDFESHLIGPWDQEAAFRVDEFKADPGLNKS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0021690 | OsLima_05g0021690.02 | Chr05 | 25307148 | 25309695 | - | NAM | ||
| CDS seq | atgggccccaccccgtggacccggcccaccgtgcactcctccttccccctcccctcccgccggcgcgaaaaccctaaccaacacaacgagacgacgagaaaaagagagtgtgaagcgaagcgagcaaagaaagaaagagaaaaaaaaaatccccccaaatcccaaggcctccctctcctctctctctcgctctcccctccccgcgcgtcgctttcgccggacaccaccgccccccgccgctttcccctcctctcctctcctcgcgtcgcctccttccttccctttttgacccccccaattcccaactgggaatcccccCCTCGGACGGCGGCGGAAGCGGAAGCAGCAGAGGAGAGCATCTGGTTCCCCTGCGCTGCCCGCTTTTTGGTGGTGGTGGCGGCGGCCGGCGGCGGATCGCTGCCTCGCCGTGCCGGTAAGcattctcatgatgtaccatgcaaagaagttctctgtaccctttggaccgcagagtacacagagtaa
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| Protein seq | MGPTPWTRPTVHSSFPLPSRRRENPNQHNETTRKRECEAKRAKKEREKKNPPKSQGLPLLSLSLSPPRASLSPDTTAPRRFPLLSSPRVASFLPFLTPPIPNWESPPRTAAEAEAAEESIWFPCAARFLVVVAAAGGGSLPRRAGKHSHDVPCKEVLCTLWTAEYTE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0021690 | OsLima_05g0021690.03 | Chr05 | 25305588 | 25309570 | - | NAM | ||
| CDS seq | atgatgtaccatgcaaagaagttctctgtaccctttggaccgcagagtacacagagtaacgatcatatgagtaatattggagcttttggcgggtcaaacatgggcagccctgctaatcctgcagggagtgggaaacaacggctacgttggacctcagatctccataaccgctttgtggatgctattgctcagcttggtggacctgatagagcaacacctaaaggggttctcactgtaatgggtgttcctgggatcacaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaagtacataccagaatctcctgctgaaggctcaaaagacgaaaagaaggattctagcgattccctctctaacacagattctgcaccaggaatgcaaatcaatgaagctttgaagatgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagctgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagcaaaagctcggtggatcactcaaagcttgtgaggagcagaagctaccgcattcaccaccaagcttagatgactacccagatagcatgcagccatctccaaagaaacccaagatggacaacctgtcacctgattcggtacgggatgtgacacagtcagattttgaatcccatttgattggtccttgggatcaagaggctgcattccgagtggatgaatttaaagctgaccctggtctgaacaaatcataa
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| Protein seq | MMYHAKKFSVPFGPQSTQSNDHMSNIGAFGGSNMGSPANPAGSGKQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRLAKYIPESPAEGSKDEKKDSSDSLSNTDSAPGMQINEALKMQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQMIIEEQQKLGGSLKACEEQKLPHSPPSLDDYPDSMQPSPKKPKMDNLSPDSVRDVTQSDFESHLIGPWDQEAAFRVDEFKADPGLNKS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0021690 | OsLima_05g0021690.04 | Chr05 | 25305588 | 25309570 | - | NAM | ||
| CDS seq | atgatgtaccatgcaaagaagttctctgtaccctttggaccgcagagtacacagagtaacgatcatatgagtaatattggagcttttggcgggtcaaacatgggcagccctgctaatcctgcagggagtgggaaacaacggctacgttggacctcagatctccataaccgctttgtggatgctattgctcagcttggtggacctgatagagcaacacctaaaggggttctcactgtaatgggtgttcctgggatcacaatttatcatgtgaagagccatttgcagaaatatcgccttgcaaagtacataccagaatctcctgctgaaggctcaaaagacgaaaagaaggattctagcgattccctctctaacacagattctgcaccaggaatgcaaatcaatgaagctttgaagatgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagctgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagcaaaagctcggtggatcactcaaagcttgtgaggagcagaagctaccgcattcaccaccaagcttagatgactacccagatagcatgcagccatctccaaagaaacccaagatggacaacctgtcacctgattcggtacgggatgtgacacagtcagattttgaatcccatttgattggtccttgggatcaagaggctgcattccgagtggatgaatttaaagctgaccctggtctgaacaaatcataa
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| Protein seq | MMYHAKKFSVPFGPQSTQSNDHMSNIGAFGGSNMGSPANPAGSGKQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRLAKYIPESPAEGSKDEKKDSSDSLSNTDSAPGMQINEALKMQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQMIIEEQQKLGGSLKACEEQKLPHSPPSLDDYPDSMQPSPKKPKMDNLSPDSVRDVTQSDFESHLIGPWDQEAAFRVDEFKADPGLNKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 25307938 | 25309258 | - | OsLima_05g0021690.01 | OsLima_05g0021690.03,OsLima_05g0021690.02,OsLima_05g0021690.01 | All |
| SE | Chr05 | 25307938 | 25309258 | - | OsLima_05g0021690.04 | OsLima_05g0021690.03,OsLima_05g0021690.02,OsLima_05g0021690.04 | All |
| A5 | Chr05 | 25307938 | 25308088 | - | OsLima_05g0021690.04 | OsLima_05g0021690.01,OsLima_05g0021690.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.865505 | 0.290145 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0491500 | RBH | 2.607730 | 2.403403 | 6.517207 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41240 | RBH | 1.762148 | 1.614715 | 1.613998 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0491500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021850 | RBH | 0.300715 | 25.317818 | 7.846588 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021810 | RBH | 0.512998 | 2.616485 | 4.081480 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021740 | RBH | 1.376271 | 5.831452 | 8.869255 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021730 | RBH | 0.207357 | 0.139391 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021840 | RBH | 12.943373 | 5.713891 | 17.356236 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0374500 | RBH | 6.0842245 | 12.6958245 | 6.506089 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021390 | RBH | 0.713245 | 0.888783 | 1.846383 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0384100 | RBH | 5.1602025 | 14.26141 | 10.2980445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039070 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021620 | RBH | 0.738739 | 7.345214 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021720 | RBH | 12.665267 | 19.473577 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021790 | RBH | 2.274422 | 0.706230 | 2.298526 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021770 | RBH | 0.511231 | 5.027402 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021210 | RBH | 1.560349 | 0.475629 | 4.208004 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021650 | RBH | 4.253499 | 34.313370 | 10.859095 |
