Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0018550 | OGI:05058360 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:22663026-22664640 | ||||||||
| Gene Symbol | OsPUB44 | ||||||||||
| DNA seq | gcccaacgactgactcatcatcatccccacggggcaatcgccatggacgcggcggtcgccgggcagcacgcgaggcggcggatccggccgccggagccgctggtgatggccgggtcgccgtcgacgcccgccgccttccggtgcccgatctcgctggaggtgatgcggtcgccggtgagcctgcccaccggcgccacgtacgaccgggcgtccatacagcggtggctcgataccggCcaccgcacctgcccggccacgcggctcccgctggcgtccaccgacctcgtccccaacctgctcctgcgcaggctcatacacctgcacgccgccacgctgccgccctcgccctccccggaggtggtgctctcgcagctcgcggcggcgggcggggagcccgccgcggcggagaaggccgtgcgctcgctcgccgccaagatcgccccggagaaagggaagcgggcatccgtcgcgtccgccgtcgccgctgaccttgactccgccgtgccggccctcctctccttcgccaagggcggggcgggcgccgacgcgcgcgtcgacgcggtgaggatcctggccacggtggctcccgagctggtcccttacttgaccagagacgggacggagaagcgcgggagggtcaggatggccgtcgaggccttggccgccgtcttgtccgcggacggggtaggcgaagacaccaaggaaggcctcatcgccgccctcgtagccggcgatctgggccacatcgtgaaCacgctcatcgccgcgggtgctaatggcgtcatggttctcgagacgatcctgacatcgcccgttccggacgccgacgccaagacggccatcgccgacaggtcagagctgttcccggatctggtacggatcctcaaggacgccgcatcgccggcggcaatccgctgcatggcggcggccgtgcaggtgcgaggccggcccgctcgctcgtcgatggtccgggcaggcgccatcccggcgctcgcgctggccgtcgcggcggcgcccacggccgtggcggagtccgccctggggctactggtagaggccgcccgctgcaccgatggcaaagcggccatcggcgccgacgcggcggaggtagcggcggccgtgatggggcggatgatccgggtcgggccggcggggcgcgagttcgccgtggcagtgctgtggctgtcctgctgcgccgggggaggcgaccggaggatgagggaggcagtggcgtccgcgccggaggccgtggggaagctgctcgtggtgatgcaaggggattgctcgccgtcgacgtcgcggatggccggcgagctgctccgggcggtgaggatggagcaggaaaggaagggcctcgccgccgcctacgacagccgcaccatccatgtcatgccttactgaaaccaaaaccacacctctgtactctattcgtgtaattttcttactaagctaacccctggccataatgccgtgaaaaaatcactactcggggtttgctatgaatttagcgcaatttagggcatcatctgcttgcagaaatatatatatgctgcttccgttcgagcaaagaaaaaattctcttaagagattccaataacaacaagtgtttcatggc
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| CDS seq | atggacgcggcggtcgccgggcagcacgcgaggcggcggatccggccgccggagccgctggtgatggccgggtcgccgtcgacgcccgccgccttccggtgcccgatctcgctggaggtgatgcggtcgccggtgagcctgcccaccggcgccacgtacgaccgggcgtccatacagcggtggctcgataccggCcaccgcacctgcccggccacgcggctcccgctggcgtccaccgacctcgtccccaacctgctcctgcgcaggctcatacacctgcacgccgccacgctgccgccctcgccctccccggaggtggtgctctcgcagctcgcggcggcgggcggggagcccgccgcggcggagaaggccgtgcgctcgctcgccgccaagatcgccccggagaaagggaagcgggcatccgtcgcgtccgccgtcgccgctgaccttgactccgccgtgccggccctcctctccttcgccaagggcggggcgggcgccgacgcgcgcgtcgacgcggtgaggatcctggccacggtggctcccgagctggtcccttacttgaccagagacgggacggagaagcgcgggagggtcaggatggccgtcgaggccttggccgccgtcttgtccgcggacggggtaggcgaagacaccaaggaaggcctcatcgccgccctcgtagccggcgatctgggccacatcgtgaaCacgctcatcgccgcgggtgctaatggcgtcatggttctcgagacgatcctgacatcgcccgttccggacgccgacgccaagacggccatcgccgacaggtcagagctgttcccggatctggtacggatcctcaaggacgccgcatcgccggcggcaatccgctgcatggcggcggccgtgcaggtgcgaggccggcccgctcgctcgtcgatggtccgggcaggcgccatcccggcgctcgcgctggccgtcgcggcggcgcccacggccgtggcggagtccgccctggggctactggtagaggccgcccgctgcaccgatggcaaagcggccatcggcgccgacgcggcggaggtagcggcggccgtgatggggcggatgatccgggtcgggccggcggggcgcgagttcgccgtggcagtgctgtggctgtcctgctgcgccgggggaggcgaccggaggatgagggaggcagtggcgtccgcgccggaggccgtggggaagctgctcgtggtgatgcaaggggattgctcgccgtcgacgtcgcggatggccggcgagctgctccgggcggtgaggatggagcaggaaaggaagggcctcgccgccgcctacgacagccgcaccatccatgtcatgccttactga
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| Protein seq | MDAAVAGQHARRRIRPPEPLVMAGSPSTPAAFRCPISLEVMRSPVSLPTGATYDRASIQRWLDTGHRTCPATRLPLASTDLVPNLLLRRLIHLHAATLPPSPSPEVVLSQLAAAGGEPAAAEKAVRSLAAKIAPEKGKRASVASAVAADLDSAVPALLSFAKGGAGADARVDAVRILATVAPELVPYLTRDGTEKRGRVRMAVEALAAVLSADGVGEDTKEGLIAALVAGDLGHIVNTLIAAGANGVMVLETILTSPVPDADAKTAIADRSELFPDLVRILKDAASPAAIRCMAAAVQVRGRPARSSMVRAGAIPALALAVAAAPTAVAESALGLLVEAARCTDGKAAIGADAAEVAAAVMGRMIRVGPAGREFAVAVLWLSCCAGGGDRRMREAVASAPEAVGKLLVVMQGDCSPSTSRMAGELLRAVRMEQERKGLAAAYDSRTIHVMPY |
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| Function | U-box domain-containing protein 29 [UniProtKB/Swiss-Prot:Q9LSA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0018550 | OsLima_05g0018550.01 | Chr05 | 22663026 | 22664640 | + | NAM | ||
| CDS seq | atggacgcggcggtcgccgggcagcacgcgaggcggcggatccggccgccggagccgctggtgatggccgggtcgccgtcgacgcccgccgccttccggtgcccgatctcgctggaggtgatgcggtcgccggtgagcctgcccaccggcgccacgtacgaccgggcgtccatacagcggtggctcgataccggCcaccgcacctgcccggccacgcggctcccgctggcgtccaccgacctcgtccccaacctgctcctgcgcaggctcatacacctgcacgccgccacgctgccgccctcgccctccccggaggtggtgctctcgcagctcgcggcggcgggcggggagcccgccgcggcggagaaggccgtgcgctcgctcgccgccaagatcgccccggagaaagggaagcgggcatccgtcgcgtccgccgtcgccgctgaccttgactccgccgtgccggccctcctctccttcgccaagggcggggcgggcgccgacgcgcgcgtcgacgcggtgaggatcctggccacggtggctcccgagctggtcccttacttgaccagagacgggacggagaagcgcgggagggtcaggatggccgtcgaggccttggccgccgtcttgtccgcggacggggtaggcgaagacaccaaggaaggcctcatcgccgccctcgtagccggcgatctgggccacatcgtgaaCacgctcatcgccgcgggtgctaatggcgtcatggttctcgagacgatcctgacatcgcccgttccggacgccgacgccaagacggccatcgccgacaggtcagagctgttcccggatctggtacggatcctcaaggacgccgcatcgccggcggcaatccgctgcatggcggcggccgtgcaggtgcgaggccggcccgctcgctcgtcgatggtccgggcaggcgccatcccggcgctcgcgctggccgtcgcggcggcgcccacggccgtggcggagtccgccctggggctactggtagaggccgcccgctgcaccgatggcaaagcggccatcggcgccgacgcggcggaggtagcggcggccgtgatggggcggatgatccgggtcgggccggcggggcgcgagttcgccgtggcagtgctgtggctgtcctgctgcgccgggggaggcgaccggaggatgagggaggcagtggcgtccgcgccggaggccgtggggaagctgctcgtggtgatgcaaggggattgctcgccgtcgacgtcgcggatggccggcgagctgctccgggcggtgaggatggagcaggaaaggaagggcctcgccgccgcctacgacagccgcaccatccatgtcatgccttactga
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| Protein seq | MDAAVAGQHARRRIRPPEPLVMAGSPSTPAAFRCPISLEVMRSPVSLPTGATYDRASIQRWLDTGHRTCPATRLPLASTDLVPNLLLRRLIHLHAATLPPSPSPEVVLSQLAAAGGEPAAAEKAVRSLAAKIAPEKGKRASVASAVAADLDSAVPALLSFAKGGAGADARVDAVRILATVAPELVPYLTRDGTEKRGRVRMAVEALAAVLSADGVGEDTKEGLIAALVAGDLGHIVNTLIAAGANGVMVLETILTSPVPDADAKTAIADRSELFPDLVRILKDAASPAAIRCMAAAVQVRGRPARSSMVRAGAIPALALAVAAAPTAVAESALGLLVEAARCTDGKAAIGADAAEVAAAVMGRMIRVGPAGREFAVAVLWLSCCAGGGDRRMREAVASAPEAVGKLLVVMQGDCSPSTSRMAGELLRAVRMEQERKGLAAAYDSRTIHVMPY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.333429 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0439400 | RBH | 2.009923 | 1.762213 | 1.130342 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36360 | RBH | 1.307292 | 1.139958 | 0.279857 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0439400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018670 | RBH | 0.352896 | 6.337996 | 0.781495 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018620 | RBH | 0.301586 | 3.781438 | 0.789541 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018480 | RBH | 1.616863 | 4.081251 | 2.011576 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018510 | RBH | 0.198707 | 0.224708 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018730 | RBH | 6.451905 | 4.276282 | 2.800638 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0363000 | SBH | 11.507787 | 176.2368015 | 3.4266245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018250 | RBH | 0.298759 | 0.446928 | 0.073786 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0343000 | RBH | 4.642455 | 48.096981 | 6.5885215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018490 | RBH | 0.564334 | 1.845834 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018610 | RBH | 1.457753 | 7.814655 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018680 | RBH | 0.450010 | 0.244884 | 0.285266 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018670 | RBH | 0.657712 | 5.148864 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018180 | RBH | 0.631018 | 0.0 | 0.658424 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018480 | RBH | 1.765625 | 8.396777 | 0.729022 |
