Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0018520 | OGI:05058260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:22647307-22648539 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggagttaaggacccagaaaacagactgagatagcattcacaatgcaaaatttacatgcacatatacaaagggaaaaatgtgtaacacttgtgctttgtcaccatctcacaggacatggtctgttttgctaaaaaaaaaaagtgcttgtcacagactcacagcgtcaaaggctgacagtccgcagagaacccggcagggcagattactcccgtttcgcctcgattcggcttcgtaccatcgtgtcctgttcctgcgtgcaatatgcataggcccgaacacttgtacacccctacacatccatcgcccactttaccaagtgtaacggcttcgaaacgtttgctgattcggcgacacacgccaactcgccaagtcggcaacacacactgtatactagctgtggacacagtggcgcggccgctgcacacgaggcgatcgaccacgtctaagcagctcatgccagtatgccaccatgggtaccagctattgactagtgagtactatgactcgcaccacctgcacggccgccggtgcagggtccggcggcgcgacgggatcggcggcggcggcggcgaacggcgcctgcctgcacgtggggcacgtcggccgcgccgcgagccaccggtcaatgcagcggtcgtggaagccgtggttgcagcccggcagcacgcgcacgtgctCcccgcgcgcgaactcggcgaggcatatcacgcactccgaccgcgacgacccggccagctcgagcccctccgtgtacgccacgcgcgggatcgtcttcgacagcagcggcgtccgcttcctgcccccgcctccgccaccccgcctcgcgcggcctccttctcctcctcctcctgcagcggcggcggcggcggtctccgcgccgtagcacgcgcgccgcgtgacgcggagcgcgcactggagtacgacgtggagcgcgacggcggcgacgaggccgcagacgaggagcgcgagcaggacgatggtgttggtgttgagcgacgacacggcgaggggaccgccgcggccattctcggcgaccggcagagcgccggcgactcctggtggcaccgccgccggcgcgggagacgcgctcggcgccacgaggaggagcgccctggcggaatggtgcagccgcggcgcgtccatgagcgagcgacgacgacgaagcagcttagttagctagctcgcgcgatcgatcacgtcggagctagctaagagtgaactagctactttgt
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| CDS seq | atggacgcgccgcggctgcaccattccgccagggcgctcctcctcgtggcgccgagcgcgtctcccgcgccggcggcggtgccaccaggagtcgccggcgctctgccggtcgccgagaatggccgcggcggtcccctcgccgtgtcgtcgctcaacaccaacaccatcgtcctgctcgcgctcctcgtctgcggcctcgtcgccgccgtcgcgctccacgtcgtactccagtgcgcgctccgcgtcacgcggcgcgcgtgctacggcgcggagaccgccgccgccgccgctgcaggaggaggaggagaaggaggccgcgcgaggcggggtggcggaggcgggggcaggaagcggacgccgctgctgtcgaagacgatcccgcgcgtggcgtacacggaggggctcgagctggccgggtcgtcgcggtcggagtgcgtgatatgcctcgccgagttcgcgcgcgggGagcacgtgcgcgtgctgccgggctgcaaccacggcttccacgaccgctgcattgaccggtggctcgcggcgcggccgacgtgccccacgtgcaggcaggcgccgttcgccgccgccgccgccgatcccgtcgcgccgccggaccctgcaccggcggccgtgcaggtggtgcgagtcatagtactcactagtcaatag
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| Protein seq | MDAPRLHHSARALLLVAPSASPAPAAVPPGVAGALPVAENGRGGPLAVSSLNTNTIVLLALLVCGLVAAVALHVVLQCALRVTRRACYGAETAAAAAAGGGGEGGRARRGGGGGGRKRTPLLSKTIPRVAYTEGLELAGSSRSECVICLAEFARGEHVRVLPGCNHGFHDRCIDRWLAARPTCPTCRQAPFAAAAADPVAPPDPAPAAVQVVRVIVLTSQ |
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| Function | RING-H2 finger protein ATL72 [UniProtKB/Swiss-Prot:Q9SG96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0018520 | OsLima_05g0018520.01 | Chr05 | 22647307 | 22648539 | - | NAM | ||
| CDS seq | atggacgcgccgcggctgcaccattccgccagggcgctcctcctcgtggcgccgagcgcgtctcccgcgccggcggcggtgccaccaggagtcgccggcgctctgccggtcgccgagaatggccgcggcggtcccctcgccgtgtcgtcgctcaacaccaacaccatcgtcctgctcgcgctcctcgtctgcggcctcgtcgccgccgtcgcgctccacgtcgtactccagtgcgcgctccgcgtcacgcggcgcgcgtgctacggcgcggagaccgccgccgccgccgctgcaggaggaggaggagaaggaggccgcgcgaggcggggtggcggaggcgggggcaggaagcggacgccgctgctgtcgaagacgatcccgcgcgtggcgtacacggaggggctcgagctggccgggtcgtcgcggtcggagtgcgtgatatgcctcgccgagttcgcgcgcgggGagcacgtgcgcgtgctgccgggctgcaaccacggcttccacgaccgctgcattgaccggtggctcgcggcgcggccgacgtgccccacgtgcaggcaggcgccgttcgccgccgccgccgccgatcccgtcgcgccgccggaccctgcaccggcggccgtgcaggtggtgcgagtcatagtactcactagtcaatag
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| Protein seq | MDAPRLHHSARALLLVAPSASPAPAAVPPGVAGALPVAENGRGGPLAVSSLNTNTIVLLALLVCGLVAAVALHVVLQCALRVTRRACYGAETAAAAAAGGGGEGGRARRGGGGGGRKRTPLLSKTIPRVAYTEGLELAGSSRSECVICLAEFARGEHVRVLPGCNHGFHDRCIDRWLAARPTCPTCRQAPFAAAAADPVAPPDPAPAAVQVVRVIVLTSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0439000 | RBH | 0.410671 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36310 | RBH | 0.267806 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0439000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018630 | RBH | 0.0 | 2.128251 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018580 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018440 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018470 | RBH | 0.057837 | 0.046573 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018700 | RBH | 0.0 | 0.000000 | 1.245039 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0331300 | RBH | 1.55218 | 22.3554675 | 0.009412 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018220 | RBH | 0.078472 | 0.0 | 0.092012 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0342500 | RBH | 3.8048205 | 27.0674065 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040420 | RBH | 0.0 | 0.129403 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018640 | RBH | 0.0 | 1.124629 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018150 | RBH | 0.0 | 0.0 | 0.196306 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018440 | RBH | 0.385440 | 16.030210 | 1.715839 |
