Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0018130 | OGI:05057260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:22283215-22290388 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | gcgaaaataaaaccacattcccctcccATaaaaaaaaatatgttcatctttactgtgatagatcaaaggctgatattcggaaaacactataacataattaagaacatctccccaaagtttaaatatgtagatatgtacccagctgattcatgtacatacctaaagcacaatttgtgtgcatcatcaacaggacgtagaagttgcgaggagagctcccttgttcttgttcttatacttgaacgtgacggcgaagtagccgtaggcgagcagctcgagcgcgctgagcgcggcgatcagccagtagaagtagtcgaggtggccgcggttgaggttgttggagaaccagctgccgcccctcgccgccgtcgcccggtcgatcccggacacgagcgcgctgctgatgaagctgccgacgccgaagatgctgaggtagagcgccagcccgaggctgcgcagcttgtcgggcacctggtcgtagaagaactcctggagccccaccatggtgaacacgtccgccgcgccgaacagcacgtactgcggcaccatccaccacaggctcatcggcaccgggacgcccgccttgtcgacgagcccggcgtcccgcgccgcccgcagccggcgggtctcgacgagcgccgcgatcaccatggacaccagggacagcaccatcccggcgccgatccgctgcagcatggtgatgcccgaggggacgcccgtgtagcggcgcgccaccggcacgatgacgcggtcgtagaccgggatgatggccacgatggtgatgctgatgaagctctgcagcgccgccggtgggacctgtatatggtcgccgatgcgccggtccagcgtccccgcctgcttcgtgaagaacgtcgacgactgcgctaacgccacggcgtagatcaggcacgtcgcccagatcgggaacagccggacgatgcccttcgcttgctccacgaggcccgccttgcccaccacctgttcgtcctcctctactcccgtgctacaaaattgcagacAAAaaaaatcatgttatcgaacaccatatgtgcaagattaccagatgcgtgaagacgcattgcagcgagcattactggtttacctgaactccggcgccgatgtcgccgttggatggcactcctgcgaagccggcggaagaaGggggatcgacttcgccctgttgcgccacgccgcgagtgcctcgccggcgcgagcgaccacgcccttcttgctgccggagacgtagtagcggtacgtcctggtgccgagcaggaacacggcgagggcgcacgccatgacgacgcaggggatgccgaagccgaggccccagccgatgttgtcctggacgtagctgaggaacaccagcgtgacggcggtgccgccgcacatgccgaagtaccaccagttgaagaaggagctcctggagaccgactcctcggggtcgctcgggtcgaactggtcggcgccgaacgcctgcacgcacggcttgtggccgccctgcgcgacggccaccatgtagagggagatgtagaagaacgccacccgcagagtcgacggtgggcaggtcttgccgccggcgacggcggcgctgctgcattggttgccgccggtggagatcaaggtcgagaaagctaacatggccaagccctgcacgcagtatcgcgctgagtgatcagtgatgtagtacgttgccatacgcgcgcgcagatggcggcgaagttggaaagggaacaacagtaaagcattttataattggcaaaatttgctacaggacacctaaaaaatatgtaattagctatgagacatcgtaaaaacgtgaatttgctcaaggacacttcaaaagtatggtaatttgctgcaggacactagacgtattaaaatataatatccacctaattgacgagagagaaaccacatcaaatgaccgttttgcccttatcttcttcccctcttcctgctgttcttccgatgcttccgaaaagaataaacacCaaaCCaaataaaatgcgccggcgagccgccccatggctcctcacacttgaggcacactctgaacacgctgctcgtcgtcacgtgcacgggcatggtgttgcccatcgcgagcgcctccaatcgcgtgaccacgccgctcgccggctcgcgcgtcgtgaatcacatgccacccatgcgcgccatggctcgcccttgcgacacggcagggtcgtacgcacgagcaacggcgacaagtcaaagcccttggaaGggacatcaggtggaaggcgttcagcaccttgcgcaattcatccttgtcgttgtcgacattgccaagcatgtccactggctcctgcgcgagcttggtgagatgggtcacagaacatgtgccatcttccggaaccactgcatcttgtggaggccggcgaaggtgatgcaggtgtctgggttgaggtcgaacaacatcttgatgagcttccgtgcgtccgttgtcaaccacgtcgggcagctgaagtcatcctgccgcatcttgtgatagatgcacaccaggttctcgtcttggaacagtagcgcgccggcgagtaatagaggatgatgctacaggactagaggtcagccttggtgctatcgtagccacccggcgagcacctcggggacaatgtacgtcggcgtgccacaagcggtgtggaggagctcgtcggggcgcgcatggtagcagactgtgctgagcccgaagtcggaggttctcagcctagttaagcagcaggttctcaagctcaaggtcacagtggtacaccccgctgatgtgatttggtttttgttctttttAGaaacatcggaagaagcaagataaagataagggcaaaatggtcatttgatgtggtttctctctcatcaattaggtggatattatattttaatgcgtgcagtgtcctacagcaaattaccacacctttagagtgtccttaggcaattcacgtttttgcgatgtcccacagctaattacacattttttaggtgtcctacagcaaattttgtcattataattttatcgaggaatgcaaaagaattgaaggcccaactTAtgcacatatcggcccacaacttcatctgtaattaaacaggaataagttcactttgtatcccttatcttgaggttgagtttaaatcacatccttaGaaccataataacAgatataacgggtttcaactgatgaaaccagtgcaaatagactctcttagtggtttgtgggcaatttttgttgatgtggaatcctaatcggtgatgagggatgtgaagtgaacaattcattagttgagggacacaaatggcgcgacgggccagtgtacaccttaccagatgctatcatgtaaacgatgaatataaagagcccgagtacaacaaagtactaggtgatctcccatccaaatctatagggtcattgtttggcttattgaggaaaaaagccaaatgacataattgcaaacaagaaatgatttgtgaataaaatttttatatacatgtttttagtgatctaaaagcaaatgattcaaattttgacttatctaccctataattcaccaactcattttactcatctttcactcttacactcttacattcatcactcaacggttcagatcgtccatgtaaaatcgaacgatcgagatcgatccaacctccccccctcccggaatcgccgattccacctcccacctcctgaatcgcgcacgctccactctctctctcgctctcccagatccatgtctcctctccgcccctaaccacgccgccgccctaatcgccgcctgccgtgtgccgccaccttagatccttcgtcgtcaagggcgccggctcgcgccgctcgccgcaatctccatagccattctcatctctcccctgctgtggccgccttcaatcctccgtggtcaagggtgccggctcaccttggtctccatcgccaccctcatctctcccctgtcgccgcctactgtgagtcctcgacgatggtgaagcggtggcgcggtgatctccgttgaaatcgacgcgcagcgcggcatttctgtccgaggtggcgcagtggctggagcgaaaggcgcctcgccggcatgacgtggactgcagcggatcttcggcaacatcacagcgccattgctccatcttccatcggcaattgtgctcctcgttggcaagtggcggcttgaacagtagtatggcgctCcccggcgaccgatctgtgtggcagctctaacgatctttgtgctCccctgttcgtgctgctaatctccattgagatcaggtcaaatttccccaattttgttgtttccaattggagagtttctgtagatatgtttccaattatagcgtcgtcttttgctcatatatcatttttgtttagcgaaaatatatgatgaaaatttgtatgtgcggtaacagaaaaaaaaattgcaatcataaaatcatatatatagcctttctggtgtaaatgcagtcaatagtgtagggaatctttcctatgtggtcaagggtgctggcttgctggggtctccgtcaccctgacatcaggttgccgtcgatccatcgccttcatattttgttgggtaagaaacaaatcaacgattcttcaacaatttgagtttgcagtatatggagtgttatatcgactgaaATattatttttTAttcttttgtttgtaacctcaagcttcccagattgccaattcctgtgccagattgttgatagtttggctacagaggattctgtactggaaaacatgtcaggatagtgtggcgttgtgctgtctgtgaatacatgtttctttgaacatgtttctttgagagggaggagcATGagagagaacgccagattttttggcattctcaactagaatgaGaaatatgaatacactgttcgaattttggaagatgtgaatctgccaagatgtttgccaagctctacatacaccatttgtttgctaaggtgttttcagtaaaattcctttgggcaactgtgacaatggtaaatcaagaaaatgatggtaatttaccaagtgcttttctaccaaattacatcaaacgttgtatatattttcatgggccatattggaaatgttgttttatggctaatattagcattcttatttttcagatcagataaatttcaggttgcaacttacaaggagcggtttttgtaggactaccaagttgcctaggatttttgggtaaggattatttgtttttctgatgcggatcatggaaatcgtgtgaaaaattatccagattctggtcttgaattatacttgtcaaaactaacaagattatatgaatatctataaaaataactcccctgtttctttttgtgtggacatatattgtatattgaagtgattatatataattgtcgatggtcatggattattattttcatatagtaataatatcaggtatgctgatttagaaagcttttggtctagaatattctgattttctctctttctaaggccaagctatggtatttttgattcacctcagttgcaaattgtaatgagttttatttgtatacatccaaatgaaaataatacttcctccgttgcagccagcatgtgCtgtagagattgtatcaagcagccaaaatatcatgtgctcatcatgtaaggcggtcggagtcggagAaaagaagtggatcagttaatataacatctctaagcatttttgctttttagttgtttgctagcataattactttttgtattttgttgtttcctagatgtttcgaaatttttgatgaacgatttcggtcgcgacttatttgcgaatatgattatgtattatttgttacatacatatatatatatatatacatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgcttgtaaaaaactacgtgcgtgcattaccaaatgttaccgtagctttagcacgggtatgctactataagaaaaaggatatgtaaaaagatgaggctgctagattggttttttttacattgaaagtagaaattttggtattattgcgaatttaatgtgcagggcgtgcgtaaccgtatttgcccaGaaactcatcagtgatgcgctctctctcctgggatagaatcatcgatcatttccctctagaaaaatcaaagttgatggcttgatttgccttcgtcatagaaagggaccctcttcgtcgtgttccacgatcaaacgagtaggttagtcgatccccgacgagacctcaccaaccactcgaataatttttgcgatctggctcctaataactctcagtgctacagctgctactggcttaacaaatatcttcatggaagaaacatgctcacgcgagtcacgagccaagaaccaattccaagccatggatagctttcagagctctccggtgtgctgctgacacgtgggccccgcgctagcgcactcctgagatctctcgcccatgccgaacaaacgggaattttttttctcTtttttttttatatctaggagagaaacagacgagagaaaagaagagaaaaaaaacaatggcgttttggtggtattaatttaccaggatgtagagcagcgaggcgaggaggatggtgcggtagcggccgagccaggagtcggcgagggcgccgccgagcagcggcagcagctgggagacgccgttccaggcgttgatggccgccgccgccgccgcgttcccttccccgagcgagcccgtcaggtaggtgatcaggttcgccgacaccccgtagaacgcgaaccgctccgcgatctccaccgctgcagatcccccaataatccatgtcaaattcaccaccacacaactcgtacgcatcgatgattctcagttctggcctgccaatcgagcgcactacttgcctatgatgaagagcgccgacctccagccgccggtggcgccgcggagggcggggcggccgaggtggtccacgggggcggcggcggcggcggccacatccccgtccgccatgccgtcgtccagtgcgagcagcgggtcgtaggagccggagtcggagccggaaggcatcgtcgccggccggctttgaCactctatatatatgggcagctcgctctctctctctctctctctcacgCAcacaactagccgcagctcggccgaaactttcgcagtcaatgcctactc
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| CDS seq | atgccttccggctccgactccggctcctacgacccgctgctcgcactggacgacggcatggcggacggggatgtggccgccgccgccgccgcccccgtggaccacctcggccgccccgccctccgcggcgccaccggcggctggaggtcggcgctcttcatcatagcggtggagatcgcggagcggttcgcgttctacggggtgtcggcgaacctgatcacctacctgacgggctcgctcggggaagggaacgcggcggcggcggcggccatcaacgcctggaacggcgtctcccagctgctgccgctgctcggcggcgccctcgccgactcctggctcggccgctaccgcaccatcctcctcgcctcgctgctctacatcctgggcttggccatgttagctttctcgaccttgatctccaccggcggcaaccaatgcagcagcgccgccgtcgccggcggcaagacctgcccaccgtcgactctgcgggtggcgttcttctacatctccctctacatggtggccgtcgcgcagggcggccacaagccgtgcgtgcaggcgttcggcgccgaccagttcgacccgagcgaccccgaggagtcggtctccaggagctccttcttcaactggtggtacttcggcatgtgcggcggcaccgccgtcacgctggtgttcctcagctacgtccaggacaacatcggctggggcctcggcttcggcatcccctgcgtcgtcatggcgtgcgccctcgccgtgttcctgctcggcaccaggacgtaccgctactacgtctccggcagcaagaagggcgtggtcgctcgcgccggcgaggcactcgcggcgtggcgcaacagggcgaagtcgatccccCttcttccgccggcttcgcaggagtgccatccaacggcgacatcggcgccggagttcagcacgggagtagaggaggacgaacaggtggtgggcaaggcgggcctcgtggagcaagcgaagggcatcgtccggctgttcccgatctgggcgacgtgcctgatctacgccgtggcgttagcgcagtcgtcgacgttcttcacgaagcaggcggggacgctggaccggcgcatcggcgaccatatacaggtcccaccggcggcgctgcagagcttcatcagcatcaccatcgtggccatcatcccggtctacgaccgcgtcatcgtgccggtggcgcgccgctacacgggcgtcccctcgggcatcaccatgctgcagcggatcggcgccgggatggtgctgtccctggtgtccatggtgatcgcggcgctcgtcgagacccgccggctgcgggcggcgcgggacgccgggctcgtcgacaaggcgggcgtcccggtgccgatgagcctgtggtggatggtgccgcagtacgtgctgttcggcgcggcggacgtgttcaccatggtggggctccaggagttcttctacgaccaggtgcccgacaagctgcgcagcctcgggctggcgctctacctcagcatcttcggcgtcggcagcttcatcagcagcgcgctcgtgtccgggatcgaccgggcgacggcggcgaggggcggcagctggttctccaacaacctcaaccgcggccacctcgactacttctactggctgatcgccgcgctcagcgcgctcgagctgctcgcctacggctacttcgccgtcacgttcaagtataagaacaagaacaagggagctctcctcgcaacttctacgtcctgttga
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| Protein seq | MPSGSDSGSYDPLLALDDGMADGDVAAAAAAPVDHLGRPALRGATGGWRSALFIIAVEIAERFAFYGVSANLITYLTGSLGEGNAAAAAAINAWNGVSQLLPLLGGALADSWLGRYRTILLASLLYILGLAMLAFSTLISTGGNQCSSAAVAGGKTCPPSTLRVAFFYISLYMVAVAQGGHKPCVQAFGADQFDPSDPEESVSRSSFFNWWYFGMCGGTAVTLVFLSYVQDNIGWGLGFGIPCVVMACALAVFLLGTRTYRYYVSGSKKGVVARAGEALAAWRNRAKSIPLLPPASQECHPTATSAPEFSTGVEEDEQVVGKAGLVEQAKGIVRLFPIWATCLIYAVALAQSSTFFTKQAGTLDRRIGDHIQVPPAALQSFISITIVAIIPVYDRVIVPVARRYTGVPSGITMLQRIGAGMVLSLVSMVIAALVETRRLRAARDAGLVDKAGVPVPMSLWWMVPQYVLFGAADVFTMVGLQEFFYDQVPDKLRSLGLALYLSIFGVGSFISSALVSGIDRATAARGGSWFSNNLNRGHLDYFYWLIAALSALELLAYGYFAVTFKYKNKNKGALLATSTSC |
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| Function | Protein NRT1/ PTR FAMILY 5.10 [UniProtKB/Swiss-Prot:Q0WP01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0018130 | OsLima_05g0018130.01 | Chr05 | 22283215 | 22290388 | - | NAM | ||
| CDS seq | atgccttccggctccgactccggctcctacgacccgctgctcgcactggacgacggcatggcggacggggatgtggccgccgccgccgccgcccccgtggaccacctcggccgccccgccctccgcggcgccaccggcggctggaggtcggcgctcttcatcatagcggtggagatcgcggagcggttcgcgttctacggggtgtcggcgaacctgatcacctacctgacgggctcgctcggggaagggaacgcggcggcggcggcggccatcaacgcctggaacggcgtctcccagctgctgccgctgctcggcggcgccctcgccgactcctggctcggccgctaccgcaccatcctcctcgcctcgctgctctacatcctgggcttggccatgttagctttctcgaccttgatctccaccggcggcaaccaatgcagcagcgccgccgtcgccggcggcaagacctgcccaccgtcgactctgcgggtggcgttcttctacatctccctctacatggtggccgtcgcgcagggcggccacaagccgtgcgtgcaggcgttcggcgccgaccagttcgacccgagcgaccccgaggagtcggtctccaggagctccttcttcaactggtggtacttcggcatgtgcggcggcaccgccgtcacgctggtgttcctcagctacgtccaggacaacatcggctggggcctcggcttcggcatcccctgcgtcgtcatggcgtgcgccctcgccgtgttcctgctcggcaccaggacgtaccgctactacgtctccggcagcaagaagggcgtggtcgctcgcgccggcgaggcactcgcggcgtggcgcaacagggcgaagtcgatccccCttcttccgccggcttcgcaggagtgccatccaacggcgacatcggcgccggagttcagcacgggagtagaggaggacgaacaggtggtgggcaaggcgggcctcgtggagcaagcgaagggcatcgtccggctgttcccgatctgggcgacgtgcctgatctacgccgtggcgttagcgcagtcgtcgacgttcttcacgaagcaggcggggacgctggaccggcgcatcggcgaccatatacaggtcccaccggcggcgctgcagagcttcatcagcatcaccatcgtggccatcatcccggtctacgaccgcgtcatcgtgccggtggcgcgccgctacacgggcgtcccctcgggcatcaccatgctgcagcggatcggcgccgggatggtgctgtccctggtgtccatggtgatcgcggcgctcgtcgagacccgccggctgcgggcggcgcgggacgccgggctcgtcgacaaggcgggcgtcccggtgccgatgagcctgtggtggatggtgccgcagtacgtgctgttcggcgcggcggacgtgttcaccatggtggggctccaggagttcttctacgaccaggtgcccgacaagctgcgcagcctcgggctggcgctctacctcagcatcttcggcgtcggcagcttcatcagcagcgcgctcgtgtccgggatcgaccgggcgacggcggcgaggggcggcagctggttctccaacaacctcaaccgcggccacctcgactacttctactggctgatcgccgcgctcagcgcgctcgagctgctcgcctacggctacttcgccgtcacgttcaagtataagaacaagaacaagggagctctcctcgcaacttctacgtcctgttga
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| Protein seq | MPSGSDSGSYDPLLALDDGMADGDVAAAAAAPVDHLGRPALRGATGGWRSALFIIAVEIAERFAFYGVSANLITYLTGSLGEGNAAAAAAINAWNGVSQLLPLLGGALADSWLGRYRTILLASLLYILGLAMLAFSTLISTGGNQCSSAAVAGGKTCPPSTLRVAFFYISLYMVAVAQGGHKPCVQAFGADQFDPSDPEESVSRSSFFNWWYFGMCGGTAVTLVFLSYVQDNIGWGLGFGIPCVVMACALAVFLLGTRTYRYYVSGSKKGVVARAGEALAAWRNRAKSIPLLPPASQECHPTATSAPEFSTGVEEDEQVVGKAGLVEQAKGIVRLFPIWATCLIYAVALAQSSTFFTKQAGTLDRRIGDHIQVPPAALQSFISITIVAIIPVYDRVIVPVARRYTGVPSGITMLQRIGAGMVLSLVSMVIAALVETRRLRAARDAGLVDKAGVPVPMSLWWMVPQYVLFGAADVFTMVGLQEFFYDQVPDKLRSLGLALYLSIFGVGSFISSALVSGIDRATAARGGSWFSNNLNRGHLDYFYWLIAALSALELLAYGYFAVTFKYKNKNKGALLATSTSC
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0018130 | OsLima_05g0018130.02 | Chr05 | 22283246 | 22290388 | - | IsoSeq | ||
| CDS seq | atgatgcacacaaattgtgctttaggtatgtacatgaatcagctgggtacatatctacat |
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| Protein seq | MMHTNCALGMYMNQLGTYLH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.369244 | 0.059389 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0431700 | RBH | 4.877748 | 3.265714 | 2.490486 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g35650 | RBH | 3.914871 | 2.354386 | 0.677842 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0431700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018210 | RBH | 1.223800 | 13.054406 | 2.234643 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018230 | RBH | 0.187036 | 1.683484 | 2.051929 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018050 | RBH | 2.670017 | 6.094551 | 5.121060 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018070 | RBH | 0.393563 | 0.143539 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018310 | RBH | 9.902634 | 12.585323 | 4.262588 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0325000 | RBH | 4.546223 | 10.601718 | 0.2314065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017800 | RBH | 0.440487 | 0.234927 | 0.388549 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0336500 | RBH | 4.964798 | 10.4729095 | 0.27701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040880 | RBH | 0.115829 | 0.066542 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018040 | RBH | 2.272631 | 2.860833 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018170 | RBH | 12.375684 | 3.373000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018220 | RBH | 1.136557 | 0.000000 | 0.269298 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018240 | RBH | 0.283079 | 1.528007 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017730 | RBH | 0.950993 | 0.0 | 1.129720 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018030 | RBH | 3.387770 | 3.846502 | 4.368489 |
