Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0018090 | OGI:05057060 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:22225121-22228596 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | gcaggcaatgaatttcgattctcacttctttatttgtaactagaaggaaaataaaggtaaagagggaattttgcaccaatattttacccctggcattgccattatactgttataaccatgctgaattcagcaggttaatatacatctatacaagcgcattgcgtgcatcgatccatggatcattgaacatcgacaacctttctcctgtaaatataagacatcgaaaaatatacgtaagcaaaaagatccagcacggtgagcgcggcaagaagcaggtagaagtagtcgagatgtccccggttgaggtcgtcgtcgaaccagctggtgccgccgtccctcctcgtgacgacgtcgatggccgagatgaggaagctgctgatgaagctgccgacgccgaggacgctcaggtagagcgcgaggccgaggctcttgagcgcgccgggcacctggtcgtagaagaactcctgcatcccgaccaatgcgaacacgtccgccgcgccgaacagcacgtactgcggcaccatccaccacaggctcatcggcaccgccgcgccggggtcggcgtccctcgccgcgctcagccgcctcatctcgacgagcgcggcgaccagcagcgtcaccgcgcacatcgcgatgcccgcgccgatccgctgcagcatggtgatcccggtggcgacgccggtggccctgcgcgccgcgggcaccaggacgtgctcgtagagcagcacgcaggggatgatgctgacgccgaggaagctctgcagcgccgcgggtggcacctggaacgacgacgacggcccgatcctccggtccagcgtcgccgcctgcttcgtgaacagcgtcggcggctgcgcgaacagcacgccgtagagcaggcacgtcgcccatatcgggaacagcctcgccatccccctcacctcctccgcgagctcgccgtgctccgcctcaaccgtggcgccgccgccgccgccgccttctcctcgccgccggctcttcctccacgccctgacggcctcgccgacgccggagaacgcgccggagccgccgccgtcgtagaaccggtacgtcctcgtcccgagcaggaacaccaggagcccgagcagcatcaccatgcccggcacgccgaagccgaggccccagccgacgttgtcctgcacgtagctcatcaccgccgccgtgacggtcgcgctggcgcagagcccgaggtaccaccagttgaagaaggtgctccgcgacgacgactcgccggggtccgtcgcgtcgaactggtcggcgccgaacgcctggacgcacggcttgtggccgctctgggcgatggccaccaaatagagagagacgtagaagaaggccctctgcacggaggaagaccggcaaacttgccggccatcgccggaggagctgcattgttggctctgaggcgacgagaacgtggacgacaacgctagcaagcccagtccctgccgttgtttggccatggtgaataggtgagcgcagtttgcgagatcaaatatatttaggtcctgttcggaggaattttctcatgcaaaaccgtaattgtaacgtcggtattttaccggattcaaacaagaattgaactgggatgcgaagttttagcgtatcacatcaggtattatatagggtgtcacatggggtatttgggcactaataaaaaaactaattatagtatgtcggtaaactgcgagacgaaattattaagcctaattaattcatcattagcacatgtttactgtaacagtacattgtcaaatcatgtagcaattaggctaaaaaaatttgtcttgcaaattagtcgtaatttgtgcaattagttattttttatcctatatttaatactttatacatgtgttcaaacgttcgatgtgacagggtgtaaaattttagggtgggatctaaacagacactgatccatgtgaaattaatgtgttccaaacagacactgagctgaagaacttcaattgcaatgggcaggtacataaatattttctgcaagacgcggtgtgatcctatcactaaacagtaaacacaatggcatgaaagattattgatgtggctggctctactaccctgttccttcgaaaatagactactagctaaattgaaagcaacaaccctattattggtagaaaacaatatttggagactagtatgcaaataaacacatgcctgatacgtcctctcactccactgaacgtgttgagcatgatcactaccggccactggaaactacacgacccaggctataaattaagggacaattaaattaaccaattgaaactgaaacttctcccgggacgtcaggaaatgctgtttacgtgcaacaatatcaactgaaaaaccatgcccatttgacttgggcgtaataagatagcagctgcacgcaaagtcttgttaaattcagtaaatcacaattcagaacgggttcgcttggacttgcgtgtaaagtcactttccatccgcagcgcagcgtaaacggaaaatgcttccaactaaccgcgtgcggataatgccattgcgtgggagatctctcaaatccttgattttttaaattttttttaagagaagggtattttttatctggtctctacgtccaaccggatatatacggccattgaaataaaaaacttagccccacaaataacctaatttaaaattagctgtatagaagatttgaacttacgataaatactactcaggtcactaggctatataccttttcgtaatccttgatactacatcgaactctgcgcaagatggctaataaatatttttttaagaataaactgataaattatggcaaggatcactgtagaagtagcaaatgtacggaggaattgagcaggttgaacaaataaaacaataggttaaaatgtagaagtagcaaatgtacggagggaattgagcaggctgaacaaaatccccaaAGaaaacgcatcgatgagatcgagaacggaatggataaggctggagggtacggtgctgttcggttagcatctgaaactcaactgaccgtgatgtagagcacggaggaggcgacgatggtgcggtaccggccgagccacgagtcggcgacggcggcgccgagcagcggcagcatcgacgcggcgccggaccacgcgttcacggccgccgccgccgccgcggtggtctccccgaaagggccggtcaggtagctgatcaggttggacgagacgccgtagtaggcgaaccgctccgccacctccacccctaaaaaccagcggagacgattcaagcaaagctttcgatcgaggagacgcgatctggggtggcagctgtgcttacagattatgaacagcgcggacctccagccgccggtggcggggcggcggcgtgcggcgccggcgcgggggaggaggggatcggtggagcccgacgccatggttggccgatcgagcacgagcagtagtagtggaaggggtactgattcggaggcgttt
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| CDS seq | atggcgtcgggctccaccgatcccctcctcccccgcgccggcgccgcacgccgccgccccgccaccggcggctggaggtccgcgctgttcataatctgggtggaggtggcggagcggttcgcctactacggcgtctcgtccaacctgatcagctacctgaccggccctttcggggagaccaccgcggcggcggcggcggccgtgaacgcgtggtccggcgccgcgtcgatgctgccgctgctcggcgccgccgtcgccgactcgtggctcggccggtaccgcaccatcgtcgcctcctccgtgctctacatcacgggactgggcttgctagcgttgtcgtccacgttctcgtcgcctcagagccaacaatgcagctcctccggcgatggccggcaagtttgccggtcttcctccgtgcagagggccttcttctacgtctctctctatttggtggccatcgcccagagcggccacaagccgtgcgtccaggcgttcggcgccgaccagttcgacgcgacggaccccggcgagtcgtcgtcgcggagcaccttcttcaactggtggtacctcgggctctgcgccagcgcgaccgtcacggcggcggtgatgagctacgtgcaggacaacgtcggctggggcctcggcttcggcgtgccgggcatggtgatgctgctcgggctcctggtgttcctgctcgggacgaggacgtaccggttctacgacggcggcggctccggcgcgttctccggcgtcggcgaggccgtcagggcgtggaggaagagccggcggcgaggagaaggcggcggcggcggcggcgccacggttgaggcggagcacggcgagctcgcggaggaggtgagggggatggcgaggctgttcccgatatgggcgacgtgcctgctctacggcgtgctgttcgcgcagccgccgacgctgttcacgaagcaggcggcgacgctggaccggaggatcgggccgtcgtcgtcgttccaggtgccacccgcggcgctgcagagcttcctcggcgtcagcatcatcccctgcgtgctgctctacgagcacgtcctggtgcccgcggcgcgcagggccaccggcgtcgccaccgggatcaccatgctgcagcggatcggcgcgggcatcgcgatgtgcgcggtgacgctgctggtcgccgcgctcgtcgagatgaggcggctgagcgcggcgagggacgccgaccccggcgcggcggtgccgatgagcctgtggtggatggtgccgcagtacgtgctgttcggcgcggcggacgtgttcgcattggtcgggatgcaggagttcttctacgaccaggtgcccggcgcgctcaagagcctcggcctcgcgctctacctgagcgtcctcggcgtcggcagcttcatcagcagcttcctcatctcggccatcgacgtcgtcacgaggagggacggcggcaccagctggttcgacgacgacctcaaccggggacatctcgactacttctacctgcttcttgccgcgctcaccgtgctggatctttttgcttacgtatatttttcgatgtcttatatttacaggagaaaggttgtcgatgttcaatga
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| Protein seq | MASGSTDPLLPRAGAARRRPATGGWRSALFIIWVEVAERFAYYGVSSNLISYLTGPFGETTAAAAAAVNAWSGAASMLPLLGAAVADSWLGRYRTIVASSVLYITGLGLLALSSTFSSPQSQQCSSSGDGRQVCRSSSVQRAFFYVSLYLVAIAQSGHKPCVQAFGADQFDATDPGESSSRSTFFNWWYLGLCASATVTAAVMSYVQDNVGWGLGFGVPGMVMLLGLLVFLLGTRTYRFYDGGGSGAFSGVGEAVRAWRKSRRRGEGGGGGGATVEAEHGELAEEVRGMARLFPIWATCLLYGVLFAQPPTLFTKQAATLDRRIGPSSSFQVPPAALQSFLGVSIIPCVLLYEHVLVPAARRATGVATGITMLQRIGAGIAMCAVTLLVAALVEMRRLSAARDADPGAAVPMSLWWMVPQYVLFGAADVFALVGMQEFFYDQVPGALKSLGLALYLSVLGVGSFISSFLISAIDVVTRRDGGTSWFDDDLNRGHLDYFYLLLAALTVLDLFAYVYFSMSYIYRRKVVDVQ |
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| Function | Protein NRT1/ PTR FAMILY 5.10 [UniProtKB/Swiss-Prot:Q0WP01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0018090 | OsLima_05g0018090.01 | Chr05 | 22225121 | 22228596 | - | NAM | ||
| CDS seq | atggcgtcgggctccaccgatcccctcctcccccgcgccggcgccgcacgccgccgccccgccaccggcggctggaggtccgcgctgttcataatctgggtggaggtggcggagcggttcgcctactacggcgtctcgtccaacctgatcagctacctgaccggccctttcggggagaccaccgcggcggcggcggcggccgtgaacgcgtggtccggcgccgcgtcgatgctgccgctgctcggcgccgccgtcgccgactcgtggctcggccggtaccgcaccatcgtcgcctcctccgtgctctacatcacgggactgggcttgctagcgttgtcgtccacgttctcgtcgcctcagagccaacaatgcagctcctccggcgatggccggcaagtttgccggtcttcctccgtgcagagggccttcttctacgtctctctctatttggtggccatcgcccagagcggccacaagccgtgcgtccaggcgttcggcgccgaccagttcgacgcgacggaccccggcgagtcgtcgtcgcggagcaccttcttcaactggtggtacctcgggctctgcgccagcgcgaccgtcacggcggcggtgatgagctacgtgcaggacaacgtcggctggggcctcggcttcggcgtgccgggcatggtgatgctgctcgggctcctggtgttcctgctcgggacgaggacgtaccggttctacgacggcggcggctccggcgcgttctccggcgtcggcgaggccgtcagggcgtggaggaagagccggcggcgaggagaaggcggcggcggcggcggcgccacggttgaggcggagcacggcgagctcgcggaggaggtgagggggatggcgaggctgttcccgatatgggcgacgtgcctgctctacggcgtgctgttcgcgcagccgccgacgctgttcacgaagcaggcggcgacgctggaccggaggatcgggccgtcgtcgtcgttccaggtgccacccgcggcgctgcagagcttcctcggcgtcagcatcatcccctgcgtgctgctctacgagcacgtcctggtgcccgcggcgcgcagggccaccggcgtcgccaccgggatcaccatgctgcagcggatcggcgcgggcatcgcgatgtgcgcggtgacgctgctggtcgccgcgctcgtcgagatgaggcggctgagcgcggcgagggacgccgaccccggcgcggcggtgccgatgagcctgtggtggatggtgccgcagtacgtgctgttcggcgcggcggacgtgttcgcattggtcgggatgcaggagttcttctacgaccaggtgcccggcgcgctcaagagcctcggcctcgcgctctacctgagcgtcctcggcgtcggcagcttcatcagcagcttcctcatctcggccatcgacgtcgtcacgaggagggacggcggcaccagctggttcgacgacgacctcaaccggggacatctcgactacttctacctgcttcttgccgcgctcaccgtgctggatctttttgcttacgtatatttttcgatgtcttatatttacaggagaaaggttgtcgatgttcaatga
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| Protein seq | MASGSTDPLLPRAGAARRRPATGGWRSALFIIWVEVAERFAYYGVSSNLISYLTGPFGETTAAAAAAVNAWSGAASMLPLLGAAVADSWLGRYRTIVASSVLYITGLGLLALSSTFSSPQSQQCSSSGDGRQVCRSSSVQRAFFYVSLYLVAIAQSGHKPCVQAFGADQFDATDPGESSSRSTFFNWWYLGLCASATVTAAVMSYVQDNVGWGLGFGVPGMVMLLGLLVFLLGTRTYRFYDGGGSGAFSGVGEAVRAWRKSRRRGEGGGGGGATVEAEHGELAEEVRGMARLFPIWATCLLYGVLFAQPPTLFTKQAATLDRRIGPSSSFQVPPAALQSFLGVSIIPCVLLYEHVLVPAARRATGVATGITMLQRIGAGIAMCAVTLLVAALVEMRRLSAARDADPGAAVPMSLWWMVPQYVLFGAADVFALVGMQEFFYDQVPGALKSLGLALYLSVLGVGSFISSFLISAIDVVTRRDGGTSWFDDDLNRGHLDYFYLLLAALTVLDLFAYVYFSMSYIYRRKVVDVQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0018090 | OsLima_05g0018090.02 | Chr05 | 22225193 | 22228585 | - | IsoSeq | ||
| CDS seq | atcagtaccccttccactactactgctcgtgctcgatcggccaaccatggcgtcgggctccaccgatcccctcctcccccgcgccggcgccgcacgccgccgccccgccaccggcggctggaggtccgcgctgttcataatctgggtggaggtggcggagcggttcgcctactacggcgtctcgtccaacctgatcagctacctgaccggccctttcggggagaccaccgcggcggcggcggcggccgtgaacgcgtggtccggcgccgcgtcgatgctgccgctgctcggcgccgccgtcgccgactcgtggctcggccggtaccgcaccatcgtcgcctcctccgtgctctacatcacggtcagttgagtttcaga
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| Protein seq | ISTPSTTTARARSANHGVGLHRSPPPPRRRRTPPPRHRRLEVRAVHNLGGGGGAVRLLRRLVQPDQLPDRPFRGDHRGGGGGRERVVRRRVDAAAARRRRRRLVARPVPHHRRLLRALHHGQLSFR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.168080 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0430900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g35594 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0430900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018160 | RBH | 0.000000 | 0.0 | 0.349425 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018180 | RBH | 0.212340 | 0.0 | 0.175780 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018000 | RBH | 0.232036 | 0.0 | 0.358462 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018270 | RBH | 5.134057 | 0.0 | 3.047447 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0324000 | RBH | 2.320548 | 1.1385095 | 0.574926 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017760 | RBH | 0.053309 | 0.088373 | 0.072720 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0335400 | RBH | 1.4853915 | 0.5834315 | 0.911392 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040880 | SBH | 0.115829 | 0.066542 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018000 | RBH | 0.200992 | 1.664482 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018130 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018180 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018200 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017690 | RBH | 0.0 | 0.0 | 0.195506 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017980 | RBH | 0.0 | 0.0 | 0.0 |
