Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0018000 | OGI:05056930 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:22179016-22180314 | ||||||||
| Gene Symbol | DLN141, R2R3-MYB, OsDLN141, Osmyb1 | ||||||||||
| DNA seq | ctaggaatatttatcactgaataacatcgaccaatcttttttagaggaaccaacatgaagttaattactacaaagaaaaataataaagagagagagagagagattgagatcatgaagattggataatagtaagaaatatgaacagattagaacctttttctttcccTTtttttttctgaaattaaacagtattgtcgtccactagaaaaactccctgtgttacacatgttgggaattgaagctaattaagccatctcacatctcatggtcatatctcatatgtactggccttgttccaacggcctgaaatatctaaactcgtgtgggcccttgctgtcagcctgacagctgcacgcctccccgccgcggaagccgaggtggtagcagaggcagaccggccgcgcgctggtgggcgtctccgccggcggcgagctcggcgtcggcccgaccgagagctcgaggttgaggtcggggcaccgcggctcccccgtgctcgttgtgccgctgctgctgcggcagccgtcgtccgaggagtcgaccgggcgcggcggcggcggcggcttcgccacggcgaagatcgccgcggccgccgccttcgccgggacggatatgggatgcggcggcggtggtgccgccttgttgctcgccgcgatgccgtcaccgccgctgagcagcgggcggtgcgtctgcgggtcgatgccgcgggcgaggagcttgcgcttgatgtgcgtgttccagtagttcttgatctcgttgtccgtcctccccggcagctgcccggcgatcagagaccacctgaaagaagaagcgaaaccgaattgagaatcacaaggaattgatgaatgctccatcgatcggtggcggcggcgccggagacggggggagggagactgacttgttgccgaggaggctgtggaggcggatgatgagctcgtcctcgtcgtcggtgaagttgccgcgcttgaggtcggggcggaggtagttcatccaccggaggcggcagctcttgccgcagcggaggaggcccgccgccttgggcagcgagcgccagcagccttcgccatgcgccctgatgtacgcgatgagccgctggtcctcctccttcgtccacgcccccttgttcgtgtgcgccttctcgcagcacggcgacctccccatggccccgcgctctaagctacaaatccgcaaccaccgcgcgcgccgcctcgctctctcgcgctctctctcgctagctcgctcgcgcgattgtccaatctgcccagtttccaggtgagccgcggcgggggtacagacagacag
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| CDS seq | atggggaggtcgccgtgctgcgagaaggcgcacacgaacaagggggcgtggacgaaggaggaggaccagcggctcatcgcgtacatcagggcgcatggcgaaggctgctggcgctcgctgcccaaggcggcgggcctcctccgctgcggcaagagctgccgcctccggtggatgaactacctccgccccgacctcaagcgcggcaacttcaccgacgacgaggacgagctcatcatccgcctccacagcctcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaactactggaacacgcacatcaagcgcaagctcctcgcccgcggcatcgacccgcagacgcaccgcccgctgctcagcggcggtgacggcatcgcggcgagcaacaaggcggcaccaccgccgccgcatcccatatccgtcccggcgaaggcggcggccgcggcgatcttcgccgtggcgaagccgccgccgccgccgcgcccggtcgactcctcggacgacggctgccgcagcagcagcggcacaacgagcacgggggagccgcggtgccccgacctcaacctcgagctctcggtcgggccgacgccgagctcgccgccggcggagacgcccaccagcgcgcggccggtctgcctctgctaccacctcggcttccgcggcggggaggcgtgcagctgtcaggctgacagcaagggcccacacgagtttagatatttcaggccgttggaacaaggccagtacatatga
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| Protein seq | MGRSPCCEKAHTNKGAWTKEEDQRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFTDDEDELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNYWNTHIKRKLLARGIDPQTHRPLLSGGDGIAASNKAAPPPPHPISVPAKAAAAAIFAVAKPPPPPRPVDSSDDGCRSSSGTTSTGEPRCPDLNLELSVGPTPSSPPAETPTSARPVCLCYHLGFRGGEACSCQADSKGPHEFRYFRPLEQGQYI |
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| Function | Myb-related protein 308 [UniProtKB/Swiss-Prot:P81393] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0018000 | OsLima_05g0018000.01 | Chr05 | 22179016 | 22180314 | - | NAM | ||
| CDS seq | atggggaggtcgccgtgctgcgagaaggcgcacacgaacaagggggcgtggacgaaggaggaggaccagcggctcatcgcgtacatcagggcgcatggcgaaggctgctggcgctcgctgcccaaggcggcgggcctcctccgctgcggcaagagctgccgcctccggtggatgaactacctccgccccgacctcaagcgcggcaacttcaccgacgacgaggacgagctcatcatccgcctccacagcctcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaactactggaacacgcacatcaagcgcaagctcctcgcccgcggcatcgacccgcagacgcaccgcccgctgctcagcggcggtgacggcatcgcggcgagcaacaaggcggcaccaccgccgccgcatcccatatccgtcccggcgaaggcggcggccgcggcgatcttcgccgtggcgaagccgccgccgccgccgcgcccggtcgactcctcggacgacggctgccgcagcagcagcggcacaacgagcacgggggagccgcggtgccccgacctcaacctcgagctctcggtcgggccgacgccgagctcgccgccggcggagacgcccaccagcgcgcggccggtctgcctctgctaccacctcggcttccgcggcggggaggcgtgcagctgtcaggctgacagcaagggcccacacgagtttagatatttcaggccgttggaacaaggccagtacatatga
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| Protein seq | MGRSPCCEKAHTNKGAWTKEEDQRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFTDDEDELIIRLHSLLGNKWSLIAGQLPGRTDNEIKNYWNTHIKRKLLARGIDPQTHRPLLSGGDGIAASNKAAPPPPHPISVPAKAAAAAIFAVAKPPPPPRPVDSSDDGCRSSSGTTSTGEPRCPDLNLELSVGPTPSSPPAETPTSARPVCLCYHLGFRGGEACSCQADSKGPHEFRYFRPLEQGQYI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.154154 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0429900 | RBH | 1.100310 | 2.655094 | 1.648883 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g35500 | RBH | 0.641855 | 1.527246 | 0.375833 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0429900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018080 | RBH | 0.150361 | 6.587784 | 3.166732 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018090 | RBH | 0.0 | 3.599687 | 1.625750 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017900 | RBH | 1.057270 | 5.374576 | 5.153460 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017940 | RBH | 0.176672 | 0.429037 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018180 | RBH | 0.0 | 13.062137 | 0.702335 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0323200 | RBH | 4.990589 | 35.943344 | 1.311461 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017670 | RBH | 0.884459 | 1.301880 | 1.255261 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0334600 | RBH | 6.1099175 | 23.7581665 | 2.7733995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041010 | RBH | 0.0 | 0.109761 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017910 | RBH | 0.111325 | 5.039261 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018040 | RBH | 0.397292 | 17.443882 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018090 | RBH | 0.893677 | 1.825487 | 0.278399 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018110 | RBH | 0.344660 | 8.066051 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017600 | RBH | 0.122201 | 2.568664 | 0.641979 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017890 | RBH | 0.293686 | 12.265112 | 3.871402 |
