Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0017120 | OGI:05054810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:21303239-21305066 | ||||||||
| Gene Symbol | NAC24, NAC94, ONAC024, ONAC24 | ||||||||||
| DNA seq | gcacgcttcattaagtgttagctactttttaaaaaatgaattaatataatttttaaaacaactttcgtaactgtttagctatttaaaaagggtgcgtgcaaaagacgatgaagatgagttgggaaagattgctgccgaacacagccaaaagtacagtgtagcacaataattaattttgtttttttataacctcacggtgcaagattgagatggcaaactacaaaagaaagccctgctttatttatgacacaatatggtgaaaatgccaaaatacaaagaaaaaagttacatagcacacaaggttctacagacggcatccaaacctagtaattatacaattttcTttttgctttttttctttggccttcttttatttcttttctggttttattctatctggtacaatagatactaaattcactctccagcacagatcagagctatggaatgatatgAAaatcactccaccacacagttcactcctggggttgatcattgccaaagaaatcctggtccatcaggtccatgagcatctgctccatttcctggtcggtgaaggtgtaggtgctggtgtcctcttcctcaaggcggccatggccatcagcagcagcagcagcagcagtgccattgagagaggaattcccaattgttgccgccggtggctcaaggttagggatcggcggcagcatcgatggtgttccctcctggtgctcttggatggtgaagagcatgtcgccggcgccggcgaacacgccgccgtcgttcgtcgcacccaccggcagcggcgggtagttgccgggcggtgccgccggcggcggcagcggcggcgagcactgtaaccgtgagacgacgtttgatggtggtgcggtgttgtccggctctggggacttgttgaagatcttgcatagcacccactcgtctagctgcatatatacgcatatagatccatgataacatggttaatctattggtaagatcagtAaaaaagggggagatattaagccttgcatatATGatgaactaacgatcgagatcgactaggaatggaATatgtactctgttttttcttttgcaaggaggagtgtAtttagttttttctacaagttacagaagtcaaattttgtcatgtattaccttgtcAaagaatttcataactaaacagacgacacactaaaaacgaaggaccattctctcAAGAaataaaaatAAtttctcaatatagtttgtattgtttgtaccttcacagaagggtgtgcggtggatgaagacaaggatgggtgggaggcagtggaccctcccgtgtttgtgagacggtactcatgcatgatccatgtagtcttggtttccatgggcgggcggccaacatagaatacaagtgccttcttcatagctacaggagtgctttgtatgttagcaacttggacgggcttgtcagtgccggtggccttccaaaagcctgacgccgctgagcgactagggcgcacactattggggtacctgtggtcgcgtagtgtaaaaaagtaccactcatgttccccaaatagagccatggctgcaacaccaatatcattaacacattgtgtatagtagttggtaagttcatccattctataatcaagcataaatattaatgcacactagactacacatatggcttacatggaagctcccacgggttgaagttgtatatttcgacatctgcgattatggggatggggcacgatagcccggtagcacgcctctggaggtagttgatgactagttcctcatcggttggatggaaacgaaaacccgttggcaagacaggcaaggacagctgcattgccat
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| CDS seq | atggcaatgcagctgtccttgcctgtcttgccaacgggttttcgtttccatccaaccgatgaggaactagtcatcaactacctccagaggcgtgctaccgggctatcgtgccccatccccataatcgcagatgtcgaaatatacaacttcaacccgtgggagcttccatccatggctctatttggggaacatgagtggtacttttttacactacgcgaccacaggtaccccaatagtgtgcgccctagtcgctcagcggcgtcaggcttttggaaggccaccggcactgacaagcccgtccaagttgctaacatacaaagcactcctgtagctatgaagaaggcacttctagacgagtgggtgctatgcaagatcttcaacaagtccccagagccggacaacaccgcaccaccatcaaacgtcgtctcacggttacagtgctcgccgccgctgccgccgccggcggcaccgcccggcaactacccgccgctgccggtgggtgcgacgaacgacggcggcgtgttcgccggcgccggcgacatgctcttcaccatccaagagcaccaggagggaacaccatcgatgctgccgccgatccctaaccttgagccaccggcggcaacaattgggaattcctctctcaatggcactgctgctgctgctgctgctgatggccatggccgccttgaggaagaggacaccagcacctacaccttcaccgaccaggaaatggagcagatgctcatggacctgatggaccaggatttctttggcaatgatcaaccccaggagtga
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| Protein seq | MAMQLSLPVLPTGFRFHPTDEELVINYLQRRATGLSCPIPIIADVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRSAASGFWKATGTDKPVQVANIQSTPVAMKKALLDEWVLCKIFNKSPEPDNTAPPSNVVSRLQCSPPLPPPAAPPGNYPPLPVGATNDGGVFAGAGDMLFTIQEHQEGTPSMLPPIPNLEPPAATIGNSSLNGTAAAAAADGHGRLEEEDTSTYTFTDQEMEQMLMDLMDQDFFGNDQPQE |
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| Function | NAC domain-containing protein 48 [UniProtKB/Swiss-Prot:Q7F2L3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0017120 | OsLima_05g0017120.01 | Chr05 | 21303239 | 21305066 | - | NAM | ||
| CDS seq | atggcaatgcagctgtccttgcctgtcttgccaacgggttttcgtttccatccaaccgatgaggaactagtcatcaactacctccagaggcgtgctaccgggctatcgtgccccatccccataatcgcagatgtcgaaatatacaacttcaacccgtgggagcttccatccatggctctatttggggaacatgagtggtacttttttacactacgcgaccacaggtaccccaatagtgtgcgccctagtcgctcagcggcgtcaggcttttggaaggccaccggcactgacaagcccgtccaagttgctaacatacaaagcactcctgtagctatgaagaaggcacttctagacgagtgggtgctatgcaagatcttcaacaagtccccagagccggacaacaccgcaccaccatcaaacgtcgtctcacggttacagtgctcgccgccgctgccgccgccggcggcaccgcccggcaactacccgccgctgccggtgggtgcgacgaacgacggcggcgtgttcgccggcgccggcgacatgctcttcaccatccaagagcaccaggagggaacaccatcgatgctgccgccgatccctaaccttgagccaccggcggcaacaattgggaattcctctctcaatggcactgctgctgctgctgctgctgatggccatggccgccttgaggaagaggacaccagcacctacaccttcaccgaccaggaaatggagcagatgctcatggacctgatggaccaggatttctttggcaatgatcaaccccaggagtga
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| Protein seq | MAMQLSLPVLPTGFRFHPTDEELVINYLQRRATGLSCPIPIIADVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRSAASGFWKATGTDKPVQVANIQSTPVAMKKALLDEWVLCKIFNKSPEPDNTAPPSNVVSRLQCSPPLPPPAAPPGNYPPLPVGATNDGGVFAGAGDMLFTIQEHQEGTPSMLPPIPNLEPPAATIGNSSLNGTAAAAAADGHGRLEEEDTSTYTFTDQEMEQMLMDLMDQDFFGNDQPQE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0415400 | RBH | 0.0 | 0.0 | 2.233220 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34310 | RBH | 0.0 | 0.0 | 0.518941 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0415400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017230 | RBH | 0.0 | 0.0 | 0.250382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017050 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017270 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0310800 | RBH | 0.16363 | 0.024008 | 0.186727 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0320000 | RBH | 0.075705 | 0.02138 | 0.4811485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041670 | SBH | 1.632666 | 0.744833 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016700 | RBH | 0.089595 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017010 | RBH | 0.0 | 0.0 | 0.0 |
