Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0016160 | OGI:05052450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:20400971-20405632 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttaTCtctctctctctccttcggctcattcgtcactgttccaccgccggcttcgccagttgcctggccgtgtccggccactcccaggaggaggaggaggacaatggcggatgcttgggcggcgtcccctccatctcctacggctccttcgcctttcgccgcggacgacctcgtcgacgcgcggctcgcgccgtggccgccgttcgccccgtggccggcgcccgggcagctccaccacaaccgccgcggcggcgggcacccgaacccgctCttcaccatcctgccggcctcggcgctggcaataggggtcgtgctgcttgtcgccgtggtcgtcatcctggtgatgacgcgtcggtggaagcccggggcggtggacggcgccggcggcgccagctgcaacggcgacaagcctggcggcgcccccgcgtccagctgcggcagcagcgtccgcggctacaacaactccaggtactacgccgccgccgccgccggtaagtgtgcccagcaaaccaaccaacgcatcgttacatttacactgatcgcgagaagccgctctcaccatgtcgaatactcgaaatgcagggtgcatatatggcggaaggctgggtttctcggtgcagccgcggaaccgcggcgcgcaagtgttcacgtaccgggagctggagagcgcgacggacgggttcagcgagtgcaacgtggtgggccgcggcgcgtacggcgtggtcttccgcggccggctcggcgacggcaccacggccgccatcaagcggctcaagatggacggccggcgcgagggcgagcgcgagttccgcatcgaggtaagccgcaccagccatagcttcaccagcatcacgttctatcgaagcgaagcagcgtgctacctccgtcctaaaatatagctatttctagcacagtactttgtcccaaaataaagctatttttctacctaccttcttctctcaaccaatcacaaccattacctactttctctttttaaccaatcacacaccttcttcaattattctcacctactttcttaatacccgtgccaaccttaaaaatacttacattttaggacggaggaagtatccggtatccccatcaacgcacgtctcgtccatgtgcacgtaccgcgtacggccgccgcttttgtctcttcaattcgtataccaaccgtagctacctgtatgcagctgcacaacacaccagcagcagatcagagcgggtgggtagtttccgaatggttgttgacgctgctgttgccggcttgtctgcgatccctagatggttcatggctggggcaagcaaacaggttgttcGTgtgtgtgtgcctgtgtgtcatgcgtagcgtacgtacgagacctggaaacgtaaacaggcgctcctgccggcctgcctgcccgtccacccggttgcttaagtcagtcgtgcaccagcgccatcagtactggtggttcactggacgctagcgccttttcgcgacagtgcctaccctcttggtcgcttgtgacagactgttggtgctgtcttgtgcccggggggatgaagacggaacgcatgagccgaggccgcacagcggcgcgggatattcggctggctaagctttggcgtgtcatgcgcaacttgccgcggcacgccgcgcggttctcgttcgttgcggcgtgagtcgtttgccctcgcctttcgggctgtggctgtcctttgctccgcccagtggctggctttccgctacagttttgcgggtgtttggctcatcagctaggcacaccaggtcgctaatgcattctaggatgcttcgactcattgacacataaattcacactgtacacgctatggtactgtactactatcacgcgagcctaatctagggatagcgccctctcgcaagtccagatgggacagttttgcttttgtcatgggccaaccatttttggactgacattttggatttatggccgagcagatgggcgttgctattactgcccaggtaggtatcttttgttactgctttaattttttcttcaaactttttcatcacatcaaaacttttctacacacgtaaacttttaacttttccgtcacatcgtttcaattttaactaaacttttaattttgacgtgaactAaacacaccctgtgagaggcctattaactttcgagaaaccgagcatcatgggtgcatgacacattgacactgcactacatgtcctcggcacggacgaccgatgtcgttgtgcggttaagtttaacgggtgatgtctttaaagtgttggggctggggtaccgtatgtctctcgctgcagcctgctgctgcctgcagcgacgttgtatatacagatcgaatcgaattgagaggcagacagtactcacgagatgcgtgtggccgtgtgggctttccctgccggcctggccgattgacgaagccgaggatccatccgtcacgccatttaagaacctgaccggtctgacagctgcgcaggtccatactatctgacacacgatctgggccgtcccgggagccgtggtggctcacgtagtacgacatgtccctgcactaaccccaggtcatcgtccttcaggcacgccgtgttaagtgcaacacagtgtggattatcgttgattagtgtactacagtatgtaccgtcgactgtcgagcgtcgactttattagttttactgcgggtacacgtgtaagcacagttgttttggatccaataggactggtgagggatgacccagtgggatcgaggacacacgtaggtagatgggcagcgtcagcttcgcttcgggcgcaccTtttcccaaactaagcgagacaatgccaactagtatagtaagtgtataacacgatgacactgttcatggactgcatcgattacctatcatgcatgcagagggggtgatactgatacgtgattagttgattactgatcactgattatgagggtgcacgataatgtacaggtcgacctgctgagCcggatgcactcgccgtacctggtggggttgctgggctactgcgccgaccagagccaccgtctgctggttttcgagttcatgcccaacggcagcctcaagagccacctccaccggcgcgcgctggcgccggcggagcagccgccgccgctggactggcagacgcggctgggcatcgcgctggactgcgcccgcgcgctggagttcctccacgagcacagctcccccgccgtgatccaccgcgacttcaagtgcagcaacatcctcctcgaccacaactaccgcgcccgcgtctccgacttcggcatggccaagctcggctccaacaaggccaatggccaggtcaccacccgcgtcctcggcaccaccggctacctcgccccagagtacgcacaaactagcttctaTtaaacctttttctgcttaatattaactcatcgatgtcatgatgtgcttggctaaactgtggttacgtactgctgcaggtacgcgtcgacggggaagctgacgacaaagtcggacgtgtacagctacggcgtcgtgctcctcgagctgctcactgggcgggtgcccgtcgacacgaagcggccgccgggacagcacgtactcgtctcgtgggtcagtatataaaatcatcgttagttgcccatgtggtcagctatttgtcttagctacagtaggataaatgcaaggatcagtcgtgctagtcacatcagtatgaccaacagacacaacttaaattttctcacttttttgccgtgtggaatcaacgcaggcccttccgcggctgacgaaccgcgagaagctcgtgcagatggtggatcctgccctgataggccagttctccctcaaagatctggtccaggtatttataccttcctagctactctccgcatactctagtagttacactacagtattattaactggaagcagttgtgactttcaaatctctctgacccgtgcttgcgacgttgtgctatgtgcaggtggccgccatcacggcgatgtgcatacagacgaaggcggactaccggccgctgatgacggacgtggtgcagtcgctgatccccatcgtgaagagcccactcatgtcctgcacctccacgccgctgaggcccgcgcacgggcaccaccacgtcgtctacatgagcccgagcaggggctcttccaacggcggtgccctggaaacgcgatgcgtcatgcacggcttggattgattagccatatgcatctcgatcggctgcagATatataatgctagctcctatgtattactacgTCtcgatcgtcgatcgcttgcttggagtactttgagccaggcagatggggaagaagagatggatggtcagcttgtcaagctgctcgatcggagggagattgctggcactactcccagctgtgtatagaacggtaccagtaccacttcaccaagctcatcacggcttgcttgcaagacatccttgcaaatgcaattgcagatttgctgtagcagtacatcatcacgtgcgtacgattgtactatttattagggacagttgtacgacgattccttgttcttttgtacgaaatcatatatattcatatattcctgtataagatagtaattAagatggaaaaaatacaataaatggatcatcctttttcaggagcagctgtgtaattaaaagagttgttgagtgttgttta
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| CDS seq | atggcggatgcttgggcggcgtcccctccatctcctacggctccttcgcctttcgccgcggacgacctcgtcgacgcgcggctcgcgccgtggccgccgttcgccccgtggccggcgcccgggcagctccaccacaaccgccgcggcggcgggcacccgaacccgctCttcaccatcctgccggcctcggcgctggcaataggggtcgtgctgcttgtcgccgtggtcgtcatcctggtgatgacgcgtcggtggaagcccggggcggtggacggcgccggcggcgccagctgcaacggcgacaagcctggcggcgcccccgcgtccagctgcggcagcagcgtccgcggctacaacaactccaggtactacgccgccgccgccgccgggtgcatatatggcggaaggctgggtttctcggtgcagccgcggaaccgcggcgcgcaagtgttcacgtaccgggagctggagagcgcgacggacgggttcagcgagtgcaacgtggtgggccgcggcgcgtacggcgtggtcttccgcggccggctcggcgacggcaccacggccgccatcaagcggctcaagatggacggccggcgcgagggcgagcgcgagttccgcatcgaggtcgacctgctgagCcggatgcactcgccgtacctggtggggttgctgggctactgcgccgaccagagccaccgtctgctggttttcgagttcatgcccaacggcagcctcaagagccacctccaccggcgcgcgctggcgccggcggagcagccgccgccgctggactggcagacgcggctgggcatcgcgctggactgcgcccgcgcgctggagttcctccacgagcacagctcccccgccgtgatccaccgcgacttcaagtgcagcaacatcctcctcgaccacaactaccgcgcccgcgtctccgacttcggcatggccaagctcggctccaacaaggccaatggccaggtcaccacccgcgtcctcggcaccaccggctacctcgccccagagtacgcgtcgacggggaagctgacgacaaagtcggacgtgtacagctacggcgtcgtgctcctcgagctgctcactgggcgggtgcccgtcgacacgaagcggccgccgggacagcacgtactcgtctcgtgggcccttccgcggctgacgaaccgcgagaagctcgtgcagatggtggatcctgccctgataggccagttctccctcaaagatctggtccaggtggccgccatcacggcgatgtgcatacagacgaaggcggactaccggccgctgatgacggacgtggtgcagtcgctgatccccatcgtgaagagcccactcatgtcctgcacctccacgccgctgaggcccgcgcacgggcaccaccacgtcgtctacatgagcccgagcaggggctcttccaacggcggtgccctggaaacgcgatgcgtcatgcacggcttggattga
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| Protein seq | MADAWAASPPSPTAPSPFAADDLVDARLAPWPPFAPWPAPGQLHHNRRGGGHPNPLFTILPASALAIGVVLLVAVVVILVMTRRWKPGAVDGAGGASCNGDKPGGAPASSCGSSVRGYNNSRYYAAAAAGCIYGGRLGFSVQPRNRGAQVFTYRELESATDGFSECNVVGRGAYGVVFRGRLGDGTTAAIKRLKMDGRREGEREFRIEVDLLSRMHSPYLVGLLGYCADQSHRLLVFEFMPNGSLKSHLHRRALAPAEQPPPLDWQTRLGIALDCARALEFLHEHSSPAVIHRDFKCSNILLDHNYRARVSDFGMAKLGSNKANGQVTTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDTKRPPGQHVLVSWALPRLTNREKLVQMVDPALIGQFSLKDLVQVAAITAMCIQTKADYRPLMTDVVQSLIPIVKSPLMSCTSTPLRPAHGHHHVVYMSPSRGSSNGGALETRCVMHGLD |
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| Function | Probable serine/threonine-protein kinase PBL7 [UniProtKB/Swiss-Prot:Q0WRY5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0016160 | OsLima_05g0016160.01 | Chr05 | 20400971 | 20405632 | + | NAM | ||
| CDS seq | atggcggatgcttgggcggcgtcccctccatctcctacggctccttcgcctttcgccgcggacgacctcgtcgacgcgcggctcgcgccgtggccgccgttcgccccgtggccggcgcccgggcagctccaccacaaccgccgcggcggcgggcacccgaacccgctCttcaccatcctgccggcctcggcgctggcaataggggtcgtgctgcttgtcgccgtggtcgtcatcctggtgatgacgcgtcggtggaagcccggggcggtggacggcgccggcggcgccagctgcaacggcgacaagcctggcggcgcccccgcgtccagctgcggcagcagcgtccgcggctacaacaactccaggtactacgccgccgccgccgccgggtgcatatatggcggaaggctgggtttctcggtgcagccgcggaaccgcggcgcgcaagtgttcacgtaccgggagctggagagcgcgacggacgggttcagcgagtgcaacgtggtgggccgcggcgcgtacggcgtggtcttccgcggccggctcggcgacggcaccacggccgccatcaagcggctcaagatggacggccggcgcgagggcgagcgcgagttccgcatcgaggtcgacctgctgagCcggatgcactcgccgtacctggtggggttgctgggctactgcgccgaccagagccaccgtctgctggttttcgagttcatgcccaacggcagcctcaagagccacctccaccggcgcgcgctggcgccggcggagcagccgccgccgctggactggcagacgcggctgggcatcgcgctggactgcgcccgcgcgctggagttcctccacgagcacagctcccccgccgtgatccaccgcgacttcaagtgcagcaacatcctcctcgaccacaactaccgcgcccgcgtctccgacttcggcatggccaagctcggctccaacaaggccaatggccaggtcaccacccgcgtcctcggcaccaccggctacctcgccccagagtacgcgtcgacggggaagctgacgacaaagtcggacgtgtacagctacggcgtcgtgctcctcgagctgctcactgggcgggtgcccgtcgacacgaagcggccgccgggacagcacgtactcgtctcgtgggcccttccgcggctgacgaaccgcgagaagctcgtgcagatggtggatcctgccctgataggccagttctccctcaaagatctggtccaggtggccgccatcacggcgatgtgcatacagacgaaggcggactaccggccgctgatgacggacgtggtgcagtcgctgatccccatcgtgaagagcccactcatgtcctgcacctccacgccgctgaggcccgcgcacgggcaccaccacgtcgtctacatgagcccgagcaggggctcttccaacggcggtgccctggaaacgcgatgcgtcatgcacggcttggattga
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| Protein seq | MADAWAASPPSPTAPSPFAADDLVDARLAPWPPFAPWPAPGQLHHNRRGGGHPNPLFTILPASALAIGVVLLVAVVVILVMTRRWKPGAVDGAGGASCNGDKPGGAPASSCGSSVRGYNNSRYYAAAAAGCIYGGRLGFSVQPRNRGAQVFTYRELESATDGFSECNVVGRGAYGVVFRGRLGDGTTAAIKRLKMDGRREGEREFRIEVDLLSRMHSPYLVGLLGYCADQSHRLLVFEFMPNGSLKSHLHRRALAPAEQPPPLDWQTRLGIALDCARALEFLHEHSSPAVIHRDFKCSNILLDHNYRARVSDFGMAKLGSNKANGQVTTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDTKRPPGQHVLVSWALPRLTNREKLVQMVDPALIGQFSLKDLVQVAAITAMCIQTKADYRPLMTDVVQSLIPIVKSPLMSCTSTPLRPAHGHHHVVYMSPSRGSSNGGALETRCVMHGLD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.040471 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0398800 | RBH | 0.0 | 0.0 | 1.762915 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g33080 | RBH | 0.0 | 0.0 | 0.443842 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0398800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0016310 | RBH | 0.0 | 0.0 | 1.608896 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0016310 | RBH | 0.0 | 0.525357 | 0.233786 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0016150 | RBH | 0.0 | 0.000000 | 2.447929 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0016170 | RBH | 0.0 | 0.057632 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016330 | RBH | 0.0 | 0.0 | 2.557709 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0297700 | RBH | 3.9702475 | 1.418526 | 0.622993 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0015870 | RBH | 0.0 | 0.078936 | 0.140994 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0307700 | RBH | 5.504304 | 0.064284 | 2.321398 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016130 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016180 | RBH | 0.000000 | 3.097117 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0016210 | RBH | 0.0 | 0.0 | 0.350755 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0016270 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G015770 | RBH | 0.0 | 0.434812 | 1.658835 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016070 | RBH | 0.0 | 0.0 | 2.715995 |
