Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0013340 | OGI:05044590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:17570083-17578885 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgttaagcccaaacccaccacctacctcctcctcctcccctcctcctcctcctccgccgccgccgccgtccatggagacctccaagtcgccgccgccgctgcccttctccccgccgcggcaacccgggccggcgacggtgctcctgtgcccgtgcgcgacgctcctcctcctcgccctcatcgcctcctccatcgccctcaccgtccacttccgcctctactgccactcccccatcgcccacctcctcgCccctcaccgctgcccccaccgcatctgacctccgccgccgccgccgcctcgctccctctgctctcgccgctggcatgtggggcgaggtgcgtttccacctgctcggcatccgacggcgacgaggtggagggggagggggaggggggctcgccggcgcatgcggactcgagccacccggagcacgtggggcgggtgtgcgcggccatcgcggacgtcgtcgcggcgggcgcgggcgcgggcgctgacgcgagcctcgaggcggcgctcaccgcgctctcgccgccgctctccgaggcgctcgtcctggcggtgctcgaccgcttcaagcacgcgcacaggccgtcccaccgcttcttccggtgggccgccgcctccggcggcttcgcgcacaccaccatcacgtactgcaagatggtccacatcctcggcaaggcgaggcagttccagtcgatggtggcgttgatccaagagatggggaaggagggcgccctctgcatggacgcgttcaagatcgccatcaagtcgtttgctgctgccggtgagatcaagaatgcggtcggcgtgtttgagatgatgaggacgcacggcttcgacgatggggtggagtccttcaattgcttgctagttgctttggcgcaggaggggctggggagggaggctaatcaggtgttcgacagaatgcgtgaccgctacgctccagacctacggtcgtataccgcgctgatgctggcatggtgcaacgcgaggaatctggtggaggctgggCgggtttggaatgagatgctggagaatgggttgaagcctgatgttgtcgtgcacaatacgatgattgaggggttgctacgcgggcagaggcggcccgaggctgtgaagatgtttgagctcatgaaggcaaaggggcctgctccaaatgtgtggacgtatacaatgttgattcgggaccactgtaagcgaggaaagatggacgtggcaatgcggtgcttcgaggagatgcaggatgttgggtgccagccggatgtcgccacctatacatgcttgcttgtgggatatgggaatgcaaagaggatggatagagtgacagccctattggaggaaatgactcaaaaggggtgccctcctgatggacggacATacaatgctctcattaagctacttacgaataggaatatgccagatgatgcggcaagaatatataaaaagatgataaagaagggacttgagcctacgatccatacatacaacatgatgatgaagtcatatttccttggcgggaggaactacatgatgggttgtgcagtgtgggaggagatgcaccggaaggggatttgtccagatgtgaactcttacacagtgtttattaatgggcatatacgacatggtaggcctgaggaggcatgtaaatacattgaagagatgatccaaaaagggatgaagactccacagatagactacaataagtttgctgcagatttctccaaggctgggaagcctgacatattgtatgaattggctcagaaggtgaagtttacaggtaaatttgatgcgtctaatgtgttccaccagtgggcagagagaatgaaaaaacgtgtcaagaggaatgtccctaatcagactgagagcaggacgttctaagattaccatttgccagcagaaatgtggatctctttgatggtggctgaaatttgaggtgttgctcctgctttttaggagaaaggagctagttgttttctgtgttgtatagtaatggtccatgaaatattagtgtgttttcatgtgtgaacaaaatgattcagttaattatgatgtagcctatggtagttttattttagttcagtcatgtgttacgctaaatcttcattcaggagtgcctcttccatctctctcttgttccgttagtatatctcaataactcattatgctggattatgcatcgtaccatggcttagtctgtcagccatatcgttgaattcaagtatgttgaggtgcttatgattaagcaatgctgatgtgtactccctctatcctaaaataaaccaacctagattgggatgggacataacctagtacaacgaatctggatagagacatgtctagatttgttgtactagattatattccatcccaacctaggttagtttattttgggacggacggagtaggttctaaggatgaagatagccggaacttacgagccgcaactctgtggttccatccagcaatttatactgcctttagtttgtagttagcaaatctcaattgcgtccaaatattttgtgttcttaattctgaaagaaagctgtatattaagatttattttgtttctcaaaattgaccaatttccctgctttgggatcctaattcattggtaattctgcagagtagagcaagtgcaggaccaagtttttttgtggtcaatggcactattcccgtatgaggcatcttgctttttttttctcttttttgactagcagcagagctatctatattgtagaaatagaaatggcattgttctgcagttgttagttttggtcttgactgcaatttgagatgtggtcgtagcaaagttgctaaggtttattttgcctatgctatctcgcagcagctatgagcctatgcagatttattccatgtggtccatgtttgttgatctctattctagtttaaaggtgatttgagctctgttgcagtttactaatatgatcattcctcttactcctgtgagctgaatcttgtgatcttgtctacttcattgtctgtcacttgtcagaaattcctatcaaaatactgtagaatggcattctttagtatatgtctatatacaaagcgaatcaccccacaacaaacctagtctggttagatgagagctattgcaccagtcttcactgtcaattgttaagatgtcacatgtttggtcctgtttatagctcatgcctttcttgagattcttaaaaacaataaatgtttgttccataccacacttcacttctaagtacttttgcatcattactcacttgtttgagaggtaggcatgttctgtgtcttattcaaaaggctacttgttttagtgttatgtagtatgactaagttccttgtttggtatctttatgttcaatagatcaattatctggctgTttgttcgcttcgttgctatgccattgcataaacaaaggacccaacattgccatatgtttacaattggggatagatttgtcaattttactaaaaatgttgtgtgtattacagtttgctgatctgttcacatgtgatcaaagatttagctctgtttctgtggttctttaacgtggagttgtcttgttgtgcctttcaacattagatgtgcactggttccgtcctttactaaatgctattacaaatatgatttgcgtgtctaattgtagatatttcactgcttatgaaaactgcaagctcagtacgttgtaattatttgccacatttgTtttataaatctgttccgttgtattattgtgttccttatctggctttatattagtctcagacttttctactgtcccacagcacatgggagaccTttctgtctatcatgtggtgcttgattctaacttggcacttggttggtaagagtcaaggtaatgtacagtattcagttagctagctcctcttagtactgttacaccaaacatgagcaatgctctttgattctattgtacttttctgtttggtgaatttaatttattctgattcctactgtcctgatttaaatttaaacctgacagatataacatgctcacatttcaacTtttgtgatgcatgtgttagtattttttttagcTtttactctttgattaatctttcaaggacatttggtatgcaggatagaaagaaaataaaatagtaataatgccatgaatctagcctttagatttattcagcttaaaactgaatgttcttgtcctaatatttcctgaattaaatttacgtatgcgttttttcaaggaaaactgcatcaggttgaaattgacttatttggtataatgggcattattttagttctttgatggtcccttgtacagacagtatatacgtttgttttaaagaaaataaacacacctggtaactgaaatataatctggattagtgtaatggatttctcatattaatttatatcaagataatgggacagcatccattcaggatatcggattgctctggcttctcaaatctagctgagattttacgaaagacgcatgaattgaatcctgcttgtctcatgactgatgcaacctgtttctttcaagtgtcatgtgtgggtgccttttcaatctgatcatatcttgggcttctccaactgccggtggtaaaattatcttttagattggatgaacaagattaggtactttattttctcaattttatcttagttctgttagtgtgttagcttagttttctgtaaatgctgggtttataccatcttgacaccaatacttggtcatgacaaacaaattaagaaaaaagaaaaaagaaaaaaatagtctttttcttttgttgcaatcttcacttatttgaaccttcattcatatttgaggcgtccatggcactggtaagtcgaaactgtatcagactgcagattcatgGTttttactatgctatctacaaatatactaaaattttacaaatgttgaacatattcccctcaacacatattgcacattcctgtgaccttccaatgtagaagcatttaagttcatttgttcagtgaacattaattacaagctgctggtgctgctcctggccactcatactgtgcaagtttgatgcgtttcttctccgttgatcctgcagaaacagaggaagagaaggtatcatgactgtggacTAttatgctcctataagccattgagcagaagtcagtcaagactaacctgaagcagctgcaaccgaaactgtcgttggccctgctgaatcatgcggaccatccgcatgatagcatagaacggcaacaagattccagcagcccgaagtaagaacatctgcaatgcaacattccccagttagttaatttcaattgattagtttactcctctgttgagatagtgaactcactgtgacaaggctgaatgcacagtgatccgccgcttcaattgtcaccactgcaatgagatgccacaccagcagcataatggtgaactgcacaagaatcacagatgatatcagaatccaggagacaccctgaacggcctgccagacaatggacaatttcgcttcagctgtctcataccgttatcgtcaatgatcggcaccatgaggagcagtctccattacccgtctgcgcctcggatcctgcatactgctcctgatcctcctgagagagttcctcagggagcatctcctcgtctctgcaaaagaaggctctgcatcaggcagtgtaccgagttggcacacgcgtcccccatctaatccgatctggtggttgcaactgctgaaaccttgcagcaagatgcaaccccgggtgatgatgtgagtgtgactaaggtggccacgttagctggaatgctggatggccgggaaggtggatttgtgcattgacaccgtgtgatttggacgcacgctcttgacaggacgcctcaccgatgcatccacagctcatacttcacggtttgatttggctgtctatctggtcatttttggcatgatgccctattgtacatttttgttcagataatggcatttcacacagcctaacgcaattggtcagtgtagttctgtgtggaaatgttgccagctgaagcttcttttttttttctctctttttatattttgttgtgatggttctgtgtgaaaactgagctgcagctttatctctgtaatctcattggagaaccactaatcaggccaatgtaatatgccaagatgcattactgcatttcttgtcttgtattattgatagatcttaacatcttaagagctgtcaccgtgtcattgtggtccctagtttggaaggtatacttgccttgttggttgggtcctgtggcttatctaggacatcttgggggatctacctgagtggccatcttaacattaataaatggctacacagatcatctcatcaaccactggttgttagtatgctaatcctgtctctcattgcatgattggttggttccttggttgaaaacagagtgttacctactgatttaagactccgtctaagggcatgtacagtgctacattactggtgttgacagttcacagttgcatgatactactagccagataggcttagattagaaacaccttatcctaagagcattatcttaatgatcttttcctatcagaaattgacaatgcaagagatggaggagctacctgACagtgactgccgtttcaacagcctgcactttcttgggagggatggtgtaatctgactcaaaattctgtcaagaaaagcatcttgtattattaaaaaaacaggattatgcatgaaaaatctttcagaatgtcttatttaggcggctagtgtaatagtttatgaaaggttggcagaagtttacaTtttgcacaagaaaagtgcactttgcttatgattagaagcattagctaactttcttttaaccccaaagaaatctgttactttatcctctaaacataatgttgcacagctacacataattacaaatcataaataaacaagaaaaaaggagctagctgtttggcacctttcctgcacaaatttcacctttctagctaaccccaataaaagtggctagctgtttcacattatacacgaataggtcatatggtacactaatgatcaaacacaaactttcacaaagaagagcctacctggaggcaaatctcacagagtgtgctccccTtctcatcacaccacctctgcacacatcccctgtgagcatactgcacatgcacaaattaacaaacacaaaccataaacacatcattttagccactaacaaactagtaaattaatcatcacaagaaccatatcatgcatgtaacaactacaagaaatgcagggaaggatcatggaTggatgatcacttgatcagcttgtaactttgtacctaccttgagagagccagagcatccacagggggactcaattgcagcgcaccactcatcctcctcctcatggcaaatcctgcactgcctcagcagcgaggacgaggacgatgacgaagacgaagaagaaaacgaaggagaagagggttcagaagaggaagaggaagaagaaagctcatgctgttccatcacttcctctcctcctcaattccttccaataccttgctttcttggctgctcaataagatatgctctgctgctgctttctctcaccctctccctcTtttctccatggctaccaatggtggtgtttatatatggcagagaataacaccaaatgcaagcagtcacctcatggaaagaggaaaatccaagtgactgtgtcatggggcccaccagctactagtctatgggcctgtttgggggagctttaaattctgagaagcagctgtttgatagtcagcttctgagaatctggaaaaactctgaaacccagcttctccaacttctggcttcttagttcatttttcagaatttgtaactacagattcttagaagtgtggacagtttagggcagcttctagcagaagcatcttttggaaaaaactgcaactgggacaagctcccccaaacagagcctattactactaccaaccatttgttaaagAaaaagataaaacctttcattttgttcctaactactgtcaccttttgtcatctgccatttatcatgagcctaactaatgcacgttcgccttgctcgttaggcgcgtaatctttggctttcaggataaatattttgtatttatatatatatatatatatatatatatatatataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatatatatatatatatatatatatatatatttccagctggtggataactattttatctttaatttctttttttgtttacttgagacgcctcaatacctaactaataaaaaaggagtcaatgaaagaagacaatgaaagagccagtaacggtcgcaataatcactagaatgccacctcatgacatgatgaaacggcagagataagataatccactcatccttttgagcacaagcattccccttttgcaaaagcttttgtttccctttttcctttcccacttacatggaattgcaaatattcttttaggacttttcctaatgtgttctttccctcagtgtctataaaccgacaaaaggtgtaatatatatactcccgtagtcctaaatatacttttatcgttaattttttcccttaaaatatagttatttcttcacagatttattatgacagcaaaagtatgtatttgtcaacaattctgcgaagtgagttgcaaaatactctatgataatgcattagctggaattttgttcatatcttttaaggtaatttgggttaattgatttttcaggtggtctttgttaa
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| CDS seq | atggccggggagggggaggggggctcgccggcgcatgcggactcgagccacccggagcacgtggggcgggtgtgcgcggccatcgcggacgtcgtcgcggcgggcgcgggcgcgggcgctgacgcgagcctcgaggcggcgctcaccgcgctctcgccgccgctctccgaggcgctcgtcctggcggtgctcgaccgcttcaagcacgcgcacaggccgtcccaccgcttcttccggtgggccgccgcctccggcggcttcgcgcacaccaccatcacgtactgcaagatggtccacatcctcggcaaggcgaggcagttccagtcgatggtggcgttgatccaagagatggggaaggagggcgccctctgcatggacgcgttcaagatcgccatcaagtcgtttgctgctgccggtgagatcaagaatgcggtcggcgtgtttgagatgatgaggacgcacggcttcgacgatggggtggagtccttcaattgcttgctagttgctttggcgcaggaggggctggggagggaggctaatcaggtgttcgacagaatgcgtgaccgctacgctccagacctacggtcgtataccgcgctgatgctggcatggtgcaacgcgaggaatctggtggaggctgggCgggtttggaatgagatgctggagaatgggttgaagcctgatgttgtcgtgcacaatacgatgattgaggggttgctacgcgggcagaggcggcccgaggctgtgaagatgtttgagctcatgaaggcaaaggggcctgctccaaatgtgtggacgtatacaatgttgattcgggaccactgtaagcgaggaaagatggacgtggcaatgcggtgcttcgaggagatgcaggatgttgggtgccagccggatgtcgccacctatacatgcttgcttgtgggatatgggaatgcaaagaggatggatagagtgacagccctattggaggaaatgactcaaaaggggtgccctcctgatggacggacATacaatgctctcattaagctacttacgaataggaatatgccagatgatgcggcaagaatatataaaaagatgataaagaagggacttgagcctacgatccatacatacaacatgatgatgaagtcatatttccttggcgggaggaactacatgatgggttgtgcagtgtgggaggagatgcaccggaaggggatttgtccagatgtgaactcttacacagtgtttattaatgggcatatacgacatggtaggcctgaggaggcatgtaaatacattgaagagatgatccaaaaagggatgaagactccacagatagactacaataagtttgctgcagatttctccaaggctgggaagcctgacatattgtatgaattggctcagaaggtgaagtttacagaaacagaggaagagaagatttattatgacagcaaaagtggtctttgttaa
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| Protein seq | MAGEGEGGSPAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSEALVLAVLDRFKHAHRPSHRFFRWAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDVAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYELAQKVKFTETEEEKIYYDSKSGLC |
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| Function | Pentatricopeptide repeat-containing protein At3g62470, mitochondrial [UniProtKB/Swiss-Prot:Q9LZP3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0013340 | OsLima_05g0013340.01 | Chr05 | 17570083 | 17578885 | + | NAM | ||
| CDS seq | atggccggggagggggaggggggctcgccggcgcatgcggactcgagccacccggagcacgtggggcgggtgtgcgcggccatcgcggacgtcgtcgcggcgggcgcgggcgcgggcgctgacgcgagcctcgaggcggcgctcaccgcgctctcgccgccgctctccgaggcgctcgtcctggcggtgctcgaccgcttcaagcacgcgcacaggccgtcccaccgcttcttccggtgggccgccgcctccggcggcttcgcgcacaccaccatcacgtactgcaagatggtccacatcctcggcaaggcgaggcagttccagtcgatggtggcgttgatccaagagatggggaaggagggcgccctctgcatggacgcgttcaagatcgccatcaagtcgtttgctgctgccggtgagatcaagaatgcggtcggcgtgtttgagatgatgaggacgcacggcttcgacgatggggtggagtccttcaattgcttgctagttgctttggcgcaggaggggctggggagggaggctaatcaggtgttcgacagaatgcgtgaccgctacgctccagacctacggtcgtataccgcgctgatgctggcatggtgcaacgcgaggaatctggtggaggctgggCgggtttggaatgagatgctggagaatgggttgaagcctgatgttgtcgtgcacaatacgatgattgaggggttgctacgcgggcagaggcggcccgaggctgtgaagatgtttgagctcatgaaggcaaaggggcctgctccaaatgtgtggacgtatacaatgttgattcgggaccactgtaagcgaggaaagatggacgtggcaatgcggtgcttcgaggagatgcaggatgttgggtgccagccggatgtcgccacctatacatgcttgcttgtgggatatgggaatgcaaagaggatggatagagtgacagccctattggaggaaatgactcaaaaggggtgccctcctgatggacggacATacaatgctctcattaagctacttacgaataggaatatgccagatgatgcggcaagaatatataaaaagatgataaagaagggacttgagcctacgatccatacatacaacatgatgatgaagtcatatttccttggcgggaggaactacatgatgggttgtgcagtgtgggaggagatgcaccggaaggggatttgtccagatgtgaactcttacacagtgtttattaatgggcatatacgacatggtaggcctgaggaggcatgtaaatacattgaagagatgatccaaaaagggatgaagactccacagatagactacaataagtttgctgcagatttctccaaggctgggaagcctgacatattgtatgaattggctcagaaggtgaagtttacagaaacagaggaagagaagatttattatgacagcaaaagtggtctttgttaa
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| Protein seq | MAGEGEGGSPAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSEALVLAVLDRFKHAHRPSHRFFRWAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDVAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYELAQKVKFTETEEEKIYYDSKSGLC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.156341 | 0.234455 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0355200 | RBH | 2.091221 | 0.585817 | 5.205285 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g28720 | RBH | 1.321293 | 0.654004 | 1.299488 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0355200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013520 | RBH | 0.437127 | 6.273965 | 3.547719 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013560 | RBH | 0.254555 | 2.949422 | 2.133789 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013400 | RBH | 0.764245 | 9.955668 | 8.658182 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013420 | RBH | 0.145217 | 0.212029 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013550 | RBH | 5.525556 | 13.461071 | 12.228323 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0252900 | RBH | 4.8907885 | 5.7874625 | 11.0356795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0013110 | RBH | 0.158867 | 0.379510 | 0.774595 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0262500 | RBH | 3.650479 | 2.9091035 | 9.7175045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0013300 | RBH | 0.861916 | 5.576696 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0013360 | RBH | 4.841831 | 22.294352 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013450 | RBH | 0.732586 | 0.882523 | 1.210087 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0013400 | RBH | 0.072079 | 2.539687 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G013150 | RBH | 0.282875 | 4.168606 | 2.217458 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013360 | RBH | 0.000000 | 11.976331 | 6.118363 |
