Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0013050 | OGI:05043780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:17139215-17141968 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaacctaaaatcttgtaactttgaatcttgtttctattaatgaaatgactataaggtagagctggctctaccttcttcgtcaaaaagttttcagtaatgcactattgaggtaaaacacacaaaactgattttttttttttttagacattgagtccccacatgttctaagcatgacacttttttgtgtgttttgtctgctgttttccacagggaactagtaaatcaaagaaggggaaccagatagagatatgcaaaggtcaatgcctgaacaatttcagataattagaggccagctgaactaacgagttaacaatcttcattgatttagtactacaaccggaggtaaaaccaaatctgaacattcagagatatagctcttaatctccattttttctgagatctaccatacctagaagattagtaactgcgttattttgttgagatggaataTtttttttcaataactctattaatcaatgtaaattctacaatggagttgtttttttttttaaattaccttgcccatgtcagcatcagcctccttggtcatggtgagggaaatcggtgtcatcatggccgtcgatgaaattaagggcgcagatgaggccggggtggctgggaacatgtgttctactgcaactgcggtgctctcagctactggtttggtgatGgtgccacttgttcccgacgccgaactcttggtgggtgtcacgtcagccccgttccgagggaagagctgcgcacgctggacatcaaagcaggcagcacccatcatagacgttgcgtccattagtggcagaccgaaccttcccggtgtagtagcttgactagagtctagaatcagatgagagcctcaatgccccaagctcacggcaagcacctgcactgccactgcaccataggcgtcatagacctgactaagcacctcgtgggtcaccgggaatagaccatggctcacagcgacgtgaagaacagcacttgagtcatgtcccaattggctcggcatttcaccgaacaggtggtgggcatcacgttcggaagcacctccatcaagctgttgaccgcttctctggccatcggtgctatcacacaccatctcaacaccagaaaccccacaaatcaacggccctgatacaatattgtcaagaaCccgcttaattctcaacaaatcaagcacaagcacaagagataaatccacctccaaatgcaaatacttagtaactgaggatagaaattgggggaaatagaagtgtaaggtgggaataagcaatagattagcaagaaacaggggatcagaggggtagagaatcagagaaccagattttgaggtggagaatcaagagttcagttcttgaatcttgatcgatccccccatgggacaatagcagtcagccactctcccagccgagagggcccaatcaggcagcccacatagaggcccaacgcccatggcagcgccacacaccggcacgcgccaacaaatccatcgccgccaacacgcgcgaatcacaacaaggaagaccacacataaaagtttattcttttcaaaatcagtgattaattacatcaatgttattattagttaataatgataaatttttacatacaataaataattaccttttactacatctatctacaacttaactacactaaatgtacaactacaaatctatctatacaataaaaatcacaaagtggaaagtcttcgagctgagcagaatctttgactctcgaattgcgtcagtgcttcttgttcttcttcagtcttgacgacttcacttcgtcttcttcttgcggaggcgctcgtgcaccacgccgcgtcgatcatcgtccaccttgtcccagacgaccgccggcatccctcctcctccctccgaccaaatgccgggacacacgtacgcctgccggcagagtgtgtgagccaccgagtttccctcccggtagatatgccgcacctccacctcggcgaagcggcggaggaggGAgagaatctcctcgtgcatcgccgccgggatcctcgtgtgcggcttctcgccgcgcaggagctcgaccagcaccaggtcgtcgccctccaccacgagccgctccacgccgcacgacagcgcgagcctcaggccccgcatcatggcgcgggcctccaccacgcccaCcccccggtgctccgtcgtctcggcgaaggccagcacgacgccgccgtcgcacccgcggatgacgccgccgatgctcgcttgtcgggacccgtcgtggaacaccgatccgtcgaagttcagcttgtgccaccccggcggcggccgcgcccacctcacgatcagcctcgccggacgaaatggcggcgagtaaggcgaaagtggcgtcgagcagcggggagcaggcggcggcgcccaccggacgagcagtcctctcggctgaaacggcggtgaggatggggacagcggcgtcgagcaatggcgagcaggtggtggcgagggaaagatcgtcggcggcaagaaagccaaaccaccgccgccgccgccgccgccgccgtcatcagggccaccgacgcacatccgcttcccctgccagaaccctccgccatcggcggtgtgattctggcgcttcccattggcgttcttggcccgcgcgtcctccaagaacgcggcctcgtcgccccggccgtgatccgcgagaagcatccatggcggcggcgcgctcaggggattgaacctgaggcccgggaggagcccatccgcgccagcagccgacagcgtcat
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| CDS seq | atgacgctgtcggctgctggcgcggatgggctcctcccgggcctcaggttcaatcccctgagcgcgccgccgccatggatgcttctcgcggatcacggccggggcgacgaggccgcgttcttggaggacgcgcgggccaagaacgccaatgggaagcgccagaatcacaccgccgatggcggagggttctggcaggggaagcggatgtgcgtcggtggccctgatgacggcggcggcggcggcggcggcggtggtttggctttcttgccgccgacgatctttccctcgccaccacctgctcgccattgctcgacgccgctgtccccatcctcaccgccgtttcagccgagaggactgctcgtccggtgggcgccgccgcctgctccccgctgctcgacgccactttcgccttactcgccgccatttcgtccggcgaggctgatcgtgaggtgggcgcggccgccgccggggtggcacaagctgaacttcgacggatcggtgttccacgacgggtcccgacaagcgagcatcggcggcgtcatccgcgggtgcgacggcggcgtcgtgctggccttcgccgagacgacggagcaccgggggGtgggcgtggtggaggcccgcgccatgatgcggggcctgaggctcgcgctgtcgtgcggcgtggagcggctcgtggtggagggcgacgacctggtgctggtcgagctcctgcgcggcgagaagccgcacacgaggatcccggcggcgatgcacgaggagattctcTCcctcctccgccgcttcgccgaggtggaggtgcggcatatctaccgggagggaaactcggtggctcacacactctgccggcaggcgtacgtgtgtcccggcatttggtcggagggaggaggagggatgccggcggtcgtctgggacaaggtggacgatgatcgacgcggcgtggtgcacgagcgcctccgcaagaagaagacgaaaattaagcggGttcttgacaatattgtatcagggccgttgatttgtggggtttctggtgttgagatggtgtgtgatagcaccgatggccagagaagcggtcaacagcttgatggaggtgcttccgaacgtgatgcccaccacctgttcggtgaaatgccgagccaattgggacatgactcaagtgctgttcttcacgtcgctgtgagccatggtctattcccggtgacccacgaggtgcttagtcaggtctatgacgcctatggtgcagtggcagtgcagcgtgcgcagctcttccctcggaacggggctgacgtgacacccaccaagagttcggcgtcgggaacaagtggcacCatcaccaaaccagtagctgagagcaccgcagttgcagtagaacacatgttcccagccaccccggcctcatctgcgcccttaatttcatcgacggccatgatgacaccgatttccctcaccatgaccaaggaggctgatgctgacatgggcaagtgcattactgaaaactttttgacgaagaaggtagagccagctctaccttatagtcatttcattaatagaaacaagattcaaagttacaagattttaggttaa
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| Protein seq | MTLSAAGADGLLPGLRFNPLSAPPPWMLLADHGRGDEAAFLEDARAKNANGKRQNHTADGGGFWQGKRMCVGGPDDGGGGGGGGGLAFLPPTIFPSPPPARHCSTPLSPSSPPFQPRGLLVRWAPPPAPRCSTPLSPYSPPFRPARLIVRWARPPPGWHKLNFDGSVFHDGSRQASIGGVIRGCDGGVVLAFAETTEHRGVGVVEARAMMRGLRLALSCGVERLVVEGDDLVLVELLRGEKPHTRIPAAMHEEILSLLRRFAEVEVRHIYREGNSVAHTLCRQAYVCPGIWSEGGGGMPAVVWDKVDDDRRGVVHERLRKKKTKIKRVLDNIVSGPLICGVSGVEMVCDSTDGQRSGQQLDGGASERDAHHLFGEMPSQLGHDSSAVLHVAVSHGLFPVTHEVLSQVYDAYGAVAVQRAQLFPRNGADVTPTKSSASGTSGTITKPVAESTAVAVEHMFPATPASSAPLISSTAMMTPISLTMTKEADADMGKCITENFLTKKVEPALPYSHFINRNKIQSYKILG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0013050 | OsLima_05g0013050.01 | Chr05 | 17139215 | 17141968 | - | NAM | ||
| CDS seq | atgacgctgtcggctgctggcgcggatgggctcctcccgggcctcaggttcaatcccctgagcgcgccgccgccatggatgcttctcgcggatcacggccggggcgacgaggccgcgttcttggaggacgcgcgggccaagaacgccaatgggaagcgccagaatcacaccgccgatggcggagggttctggcaggggaagcggatgtgcgtcggtggccctgatgacggcggcggcggcggcggcggcggtggtttggctttcttgccgccgacgatctttccctcgccaccacctgctcgccattgctcgacgccgctgtccccatcctcaccgccgtttcagccgagaggactgctcgtccggtgggcgccgccgcctgctccccgctgctcgacgccactttcgccttactcgccgccatttcgtccggcgaggctgatcgtgaggtgggcgcggccgccgccggggtggcacaagctgaacttcgacggatcggtgttccacgacgggtcccgacaagcgagcatcggcggcgtcatccgcgggtgcgacggcggcgtcgtgctggccttcgccgagacgacggagcaccgggggGtgggcgtggtggaggcccgcgccatgatgcggggcctgaggctcgcgctgtcgtgcggcgtggagcggctcgtggtggagggcgacgacctggtgctggtcgagctcctgcgcggcgagaagccgcacacgaggatcccggcggcgatgcacgaggagattctcTCcctcctccgccgcttcgccgaggtggaggtgcggcatatctaccgggagggaaactcggtggctcacacactctgccggcaggcgtacgtgtgtcccggcatttggtcggagggaggaggagggatgccggcggtcgtctgggacaaggtggacgatgatcgacgcggcgtggtgcacgagcgcctccgcaagaagaagacgaaaattaagcggGttcttgacaatattgtatcagggccgttgatttgtggggtttctggtgttgagatggtgtgtgatagcaccgatggccagagaagcggtcaacagcttgatggaggtgcttccgaacgtgatgcccaccacctgttcggtgaaatgccgagccaattgggacatgactcaagtgctgttcttcacgtcgctgtgagccatggtctattcccggtgacccacgaggtgcttagtcaggtctatgacgcctatggtgcagtggcagtgcagcgtgcgcagctcttccctcggaacggggctgacgtgacacccaccaagagttcggcgtcgggaacaagtggcacCatcaccaaaccagtagctgagagcaccgcagttgcagtagaacacatgttcccagccaccccggcctcatctgcgcccttaatttcatcgacggccatgatgacaccgatttccctcaccatgaccaaggaggctgatgctgacatgggcaagtgcattactgaaaactttttgacgaagaaggtagagccagctctaccttatagtcatttcattaatagaaacaagattcaaagttacaagattttaggttaa
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| Protein seq | MTLSAAGADGLLPGLRFNPLSAPPPWMLLADHGRGDEAAFLEDARAKNANGKRQNHTADGGGFWQGKRMCVGGPDDGGGGGGGGGLAFLPPTIFPSPPPARHCSTPLSPSSPPFQPRGLLVRWAPPPAPRCSTPLSPYSPPFRPARLIVRWARPPPGWHKLNFDGSVFHDGSRQASIGGVIRGCDGGVVLAFAETTEHRGVGVVEARAMMRGLRLALSCGVERLVVEGDDLVLVELLRGEKPHTRIPAAMHEEILSLLRRFAEVEVRHIYREGNSVAHTLCRQAYVCPGIWSEGGGGMPAVVWDKVDDDRRGVVHERLRKKKTKIKRVLDNIVSGPLICGVSGVEMVCDSTDGQRSGQQLDGGASERDAHHLFGEMPSQLGHDSSAVLHVAVSHGLFPVTHEVLSQVYDAYGAVAVQRAQLFPRNGADVTPTKSSASGTSGTITKPVAESTAVAVEHMFPATPASSAPLISSTAMMTPISLTMTKEADADMGKCITENFLTKKVEPALPYSHFINRNKIQSYKILG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0349000 | RBH | 0.372171 | 0.210857 | 0.129272 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g28050 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0349000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013160 | RBH | 0.484255 | 1.792440 | 0.424596 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013200 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013040 | RBH | 0.108890 | 0.0 | 1.522915 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013170 | RBH | 0.817055 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0248000 | RBH | 0.4481305 | 0.6548245 | 0.424479 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0012820 | RBH | 0.103132 | 0.0 | 0.038643 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0255600 | RBH | 1.311067 | 2.3003525 | 5.452177 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0012770 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0013000 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0013060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013110 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0013130 | RBH | 0.065092 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G012790 | RBH | 0.119865 | 1.357729 | 0.271287 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013040 | RBH | 0.161845 | 0.0 | 0.0 |
