Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0011590 | OGI:05038360 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:15199464-15202665 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagatggcgctaactccattgccgctcctgtgttcgtccgtcttgttcttggtgctatcttcgtgctcgttggccaatgggagggatacgccttcttcttcttcttcttcttctccggcgacgtctactgtggccaccGgcattcccgccgccgccgccgccgccgccaatgggacggccgccttgtcttcggcagttccggcgcctccgcctgttggtacgtacgttgctggtgctgaaagctgaaattcagaattttggtgtgtgtgtgttcttactgttttgtcggtttcgagtttggaactgtttctctttacagagtttgtcctctctgcagatttggttaagcatgcactgttcttcttgatggcAaaaagaaatatatttttttggggggatcgacattgtgttgcctgcattcgaaccaacaactctgctttatttctagctgaacaaaaagaaaatcttctttgttttgagttctcaaaatctgcattttgggatgttacgttttgttcaaatttgagggggaaaaacgtggcatcaacgttattgcggaaatctcgctgcgtgttttaatgcaatcgtacctgttctttcgttagagtttactgtcatcaaatctttccaggattcaaggccgtttcaaagattaaaccaaaaaaaaaaaaagatggcgcatctgttcatgtccaattaatttactcctacttagtgggtctcaagctacctgtgctggcttgcagtgatcgtagtgcaccaccatttccaccgcgagctggtcatcgccgccgtcctcgcctgcatcgccaccgtcacgatcttcctttccacgctctacgcttggacactatggcggcgatctcgccggagcaccggcggcaaggtcaccaggagctcaggtcgatcttaaccccgctcattcaatcgctcacccaattttgggttcttgagctatctgtaattacaattctggcttaatccacatggttcagacgcagcgaaggggatcaagctggtgccgatcttgagcaggttcaactcggtgaagatgagcaggaagaggctggttgggatgttcgagtacccgtcgctggaggcagcgacagagaagttcagcgagagcaacatgctcggtgtcggcgggtttggccgcgtctacaaggcggcgttcgacgccggagttaccgcggcggtgaagcggctcgacggcggcgggcccgactgcgagaaggaattcgaggtgactctgttgctggtcatggtcaattgttggtgagaacttttacggtacaatttactagtagtagtatatactgtcagtataaacaacgcaatgccattagcccatcagtaaacttgcaacctatatactgacagtatatactatcagtaaattgtaccgtaaaagttcagttcccattgataaggggaagtatggtgttcagtgttgttgagctgaattgctttggggttgtggttgttggcagaatgagctggatttgcttggcaggatcaggcaccccaacattgtgtccctcttgggcttctgtatccatgaggggaatcactacattgtttatgagctgatggagaagggatcactggaaacacagcttcatggtatagtatttattgtcctgtatgattgggctctgccttgtcagttgtcactcactcacagtcacagctagctgcagcttagctcttccatgagatgagatcttccttccagattgggagcttttgatatgtgtagtggttgtcttcagggtcttcacatggatcaactctgagctggcacatccggatgaagatcgcccttgacacggccaggttcttataatcttatccctccactttccttcacactgaatgatgctcttttttaagagAaaaaaatgatttggtgaatgattagctggttataatatgcactggtaaaattaaaatttgtcaggggattagagtaccttcatgagcactgcagtccaccagtgatccatagggatctgaaatcgtctaacatacttttggattcagacttcaatgctaaggtacactcctttaattttcagaaaggccaaactatcttgttcatattgacagcaggtcctagtgctgggatcaaagttaaaatttggtgaagcttcagttgttgtactttgctgaaatttgcagattgcagattttggtcttgctgtgtctagtgggagtgtcaacaaagggagtgtgaagctctccgggaccttgggttatgtagctcctgagtacttgttggatggtactatgtcttcctcgtcccaaatcatactcctatttgttgacaaaactatattattgacactgaaatgctactttcattatgtgacatttagcggccatgtcgatttcagggaagttgactgaaaagagcgatgtatacgcgttcggagtagtgcttctagagctccttatggggaggaagcctgttgagaagatgtcaccatctcagtgccaatcaattgtgacatgggtacagtgcaatgtttaaattcacctgtctgaaaaaaatttaaattcagatcgcatcattttgtcggtccattaacatgattttgaacttttcctttctctttcaatgcacatagcatgctttgaatttatcacaagaaaaacattgagtttaattggagagaatgttcaagcagtcaaatttcatctcttttgagaaacttttaacttgttttaaccaaacaggcaatgccacagttgaccgacagatcgaagctccccagcatagttgacccagtgatcaaggacaccatggatccaaaacacctgtaccaagtactcatcatgaacacctgctaacattatctgatcagacacatttatctacaaggttgaaaatacatattcccataccatgtgcaggttgcagcagtggctgttctatgcgtgcaggctgaaccaagctacaggccactgatcacagatgtgctccactctcttgttcctctagtgccgacggagctcggaggaacactaagagctggagagccaccttccccgaacctgaggaattctccatgctgatatctgaatatctgatacagcaagtttgtcaaagcaagggaaaatatttatacagtttagtatagattcttatgtataacttatgttacctgtacttgctccttgtttgaggacgagagtt
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| CDS seq | atggagatggcgctaactccattgccgctcctgtgttcgtccgtcttgttcttggtgctatcttcgtgctcgttggccaatgggagggatacgccttcttcttcttcttcttcttctccggcgacgtctactgtggccaccGgcattcccgccgccgccgccgccgccgccaatgggacggccgccttgtcttcggcagttccggcgcctccgcctgttgtgatcgtagtgcaccaccatttccaccgcgagctggtcatcgccgccgtcctcgcctgcatcgccaccgtcacgatcttcctttccacgctctacgcttggacactatggcggcgatctcgccggagcaccggcggcaaggtcaccaggagctcagacgcagcgaaggggatcaagctggtgccgatcttgagcaggttcaactcggtgaagatgagcaggaagaggctggttgggatgttcgagtacccgtcgctggaggcagcgacagagaagttcagcgagagcaacatgctcggtgtcggcgggtttggccgcgtctacaaggcggcgttcgacgccggagttaccgcggcgaatgagctggatttgcttggcaggatcaggcaccccaacattgtgtccctcttgggcttctgtatccatgaggggaatcactacattgtttatgagctgatggagaagggatcactggaaacacagcttcatggtatagtatttattgtcctgtatgattgggctctgccttggtcttcacatggatcaactctgagctggcacatccggatgaagatcgcccttgacacggccaggggattagagtaccttcatgagcactgcagtccaccagtgatccatagggatctgaaatcgtctaacatacttttggattcagacttcaatgctaagattgcagattttggtcttgctgtgtctagtgggagtgtcaacaaagggagtgtgaagctctccgggaccttgggttatgtagctcctgagtacttgttggatgggaagttgactgaaaagagcgatgtatacgcgttcggagtagtgcttctagagctccttatggggaggaagcctgttgagaagatgtcaccatctcagtgccaatcaattgtgacatgggcaatgccacagttgaccgacagatcgaagctccccagcatagttgacccagtgatcaaggacaccatggatccaaaacacctgtaccaagttgcagcagtggctgttctatgcgtgcaggctgaaccaagctacaggccactgatcacagatgtgctccactctcttgttcctctagtgccgacggagctcggaggaacactaagagctggagagccaccttccccgaacctgaggaattctccatgctga
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| Protein seq | MEMALTPLPLLCSSVLFLVLSSCSLANGRDTPSSSSSSSPATSTVATGIPAAAAAAANGTAALSSAVPAPPPVVIVVHHHFHRELVIAAVLACIATVTIFLSTLYAWTLWRRSRRSTGGKVTRSSDAAKGIKLVPILSRFNSVKMSRKRLVGMFEYPSLEAATEKFSESNMLGVGGFGRVYKAAFDAGVTAANELDLLGRIRHPNIVSLLGFCIHEGNHYIVYELMEKGSLETQLHGIVFIVLYDWALPWSSHGSTLSWHIRMKIALDTARGLEYLHEHCSPPVIHRDLKSSNILLDSDFNAKIADFGLAVSSGSVNKGSVKLSGTLGYVAPEYLLDGKLTEKSDVYAFGVVLLELLMGRKPVEKMSPSQCQSIVTWAMPQLTDRSKLPSIVDPVIKDTMDPKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLVPLVPTELGGTLRAGEPPSPNLRNSPC |
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| Function | Probable receptor-like protein kinase At1g80640 [UniProtKB/Swiss-Prot:Q0V7T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0011590 | OsLima_05g0011590.01 | Chr05 | 15199464 | 15202665 | + | NAM | ||
| CDS seq | atggagatggcgctaactccattgccgctcctgtgttcgtccgtcttgttcttggtgctatcttcgtgctcgttggccaatgggagggatacgccttcttcttcttcttcttcttctccggcgacgtctactgtggccaccGgcattcccgccgccgccgccgccgccgccaatgggacggccgccttgtcttcggcagttccggcgcctccgcctgttgtgatcgtagtgcaccaccatttccaccgcgagctggtcatcgccgccgtcctcgcctgcatcgccaccgtcacgatcttcctttccacgctctacgcttggacactatggcggcgatctcgccggagcaccggcggcaaggtcaccaggagctcagacgcagcgaaggggatcaagctggtgccgatcttgagcaggttcaactcggtgaagatgagcaggaagaggctggttgggatgttcgagtacccgtcgctggaggcagcgacagagaagttcagcgagagcaacatgctcggtgtcggcgggtttggccgcgtctacaaggcggcgttcgacgccggagttaccgcggcgaatgagctggatttgcttggcaggatcaggcaccccaacattgtgtccctcttgggcttctgtatccatgaggggaatcactacattgtttatgagctgatggagaagggatcactggaaacacagcttcatggtatagtatttattgtcctgtatgattgggctctgccttggtcttcacatggatcaactctgagctggcacatccggatgaagatcgcccttgacacggccaggggattagagtaccttcatgagcactgcagtccaccagtgatccatagggatctgaaatcgtctaacatacttttggattcagacttcaatgctaagattgcagattttggtcttgctgtgtctagtgggagtgtcaacaaagggagtgtgaagctctccgggaccttgggttatgtagctcctgagtacttgttggatgggaagttgactgaaaagagcgatgtatacgcgttcggagtagtgcttctagagctccttatggggaggaagcctgttgagaagatgtcaccatctcagtgccaatcaattgtgacatgggcaatgccacagttgaccgacagatcgaagctccccagcatagttgacccagtgatcaaggacaccatggatccaaaacacctgtaccaagttgcagcagtggctgttctatgcgtgcaggctgaaccaagctacaggccactgatcacagatgtgctccactctcttgttcctctagtgccgacggagctcggaggaacactaagagctggagagccaccttccccgaacctgaggaattctccatgctga
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| Protein seq | MEMALTPLPLLCSSVLFLVLSSCSLANGRDTPSSSSSSSPATSTVATGIPAAAAAAANGTAALSSAVPAPPPVVIVVHHHFHRELVIAAVLACIATVTIFLSTLYAWTLWRRSRRSTGGKVTRSSDAAKGIKLVPILSRFNSVKMSRKRLVGMFEYPSLEAATEKFSESNMLGVGGFGRVYKAAFDAGVTAANELDLLGRIRHPNIVSLLGFCIHEGNHYIVYELMEKGSLETQLHGIVFIVLYDWALPWSSHGSTLSWHIRMKIALDTARGLEYLHEHCSPPVIHRDLKSSNILLDSDFNAKIADFGLAVSSGSVNKGSVKLSGTLGYVAPEYLLDGKLTEKSDVYAFGVVLLELLMGRKPVEKMSPSQCQSIVTWAMPQLTDRSKLPSIVDPVIKDTMDPKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLVPLVPTELGGTLRAGEPPSPNLRNSPC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0319700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g25540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0319700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0011640 | RBH | 0.0 | 9.563509 | 5.132826 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0011660 | RBH | 0.0 | 13.133675 | 0.076131 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0011610 | RBH | 0.0 | 0.000000 | 2.046123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0011670 | RBH | 0.0 | 0.537421 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0011660 | RBH | 0.0 | 26.703102 | 3.998971 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0219000 | RBH | 0.888687 | 1.023922 | 0.1308925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011410 | RBH | 0.0 | 0.876633 | 0.403384 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0228600 | RBH | 0.707386 | 0.0268915 | 1.0283965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0011510 | RBH | 0.0 | 2.655703 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0011640 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0011660 | RBH | 0.0 | 0.291703 | 0.152558 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0011670 | RBH | 0.0 | 6.486522 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G011360 | RBH | 0.0 | 9.542034 | 1.471868 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0011650 | RBH | 0.0 | 0.000000 | 1.692068 |
