Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0011550 | OGI:05038180 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:15154131-15158234 | ||||||||
| Gene Symbol | OsCrRLK1L3 | ||||||||||
| DNA seq | aaaactcagaaagggataagtgggtgatatcttccatgctcttttattacaagattacaactgcattaggaggtaagaatctcaacccccttcaatttagaggtacctatacaattactgcgattttgaaagaaacatagatctgctaaagaactaaaacatacatatatttagcccaaaatgatgcatagcaaggctagtagagcaagtaagataactatacaattagctattcctgacaagaattctgttgaggcacaccacaaatctagggagcaatattagagcttgcaatttgattttcatcttccatctggtgtcatgagctgggagaagatgttgcttggggtcagcccatcagactccacgctcgcaatgctacggtcagtgatgctcaaagaagttgtcgttgtagtggtagtagtcacgtcggtcgacggctcatctgaatgcagcctggccacaaccagcggcgacgtgctcgctgacgtcccctcggtcaggctgctactgtcctccgtgctctcctgcagctggagcgcaaactcgaggttccagagcacatcacccatggacggcctgtcgacgctgcgatcggccacacatttctccgcggtctcggcgaacttcaagaagcactggggagcgatcttccctttgaggagtgggtcaatgatctcgccaagaacacctttcttctggcaacgcagagcccagtctgcaaggctcacttgctccttcggaagcgatgggctcagggcgttgcgggcgcacaggacctcgaacagcacaactccgaaggagtagacatcagatttctcggtaagctgctgccgtcggaagtactcaggatcaaggtatccgaagctgcccttcaccactgtgctcacatgggtgttgtccacgtttggaccggccttggacagcccgaagtcggaaaccttggcaacccacttgtcatccagcaaaatgttggtggtcttgacatcgcggtggatgatggtttgctttgcacccgtgtgcaggtaatacagcccacgggcggcgccgatgcagatctccagcctctgcttccacgacaatggtgggttcttggtgttgtacaagtgttctcgaagtgtcccatgagccatgtagtcatataccaaaatcatctcattcctatcctcgcagtacccgattagagacacaaggtgacggtgtcggagcttggacagcatctcaatctcattctggaactcatggacaccctgctcagacagcgggttcccacgcttgattgcaactctagtgccactgtctatctctccaaggtaaacgttgccaaatccacctttgccgaggaggaaggatttgtcgaaattgttggtggcagcctggatttctgcaaacgaaaagtgccggcaaagattggctggcagcatcgagtggctccctgtgttggttgtctttcctgaggtggctgactgtgacttggtgaaatcagtgagaggagtccagcgtccttcatcagatttgccagtatcctttgctaccttcttctttcgtctacagatgatgcacaatccaacacaagcaatcaacaacacggcaaggccacccactgctccacctatggctgctggggcaacactctttgatttacctctactagatcccccattgggattcacaccaggctttggtggaagtggagggttgagcccagcaaggttatttcttccaaggtcctgtagcttgaagacctcaaggccatttagtattgcatcaaaatactctggtttgcttgaaagatcagggtgaagcgcgacccacaggtccgtctggccagaaccaaccgttgtgacaacatagttggtatatgttgttctgccaattcctccactccaaacaatgacgtccatttgattctgcgccgtctggttgttgatgtaaatgAaaaatgatctctgattcaccttggttattggatactggatctcacagaaatggaacctcaagaggtaggtgaaccccgcatcaaccggtaagatccatgtaagattgtagttcaggttgatctgtgcagttggccccattgaccttgctgttgcgtagactgcaactggtgcagtgtaatttggctcagtatttggatatttgatggtgacattaccatctttggagaaggtcaccccataggcagcaccatatatgtaaggagaatcattatcccaagaacgatagaatccagaatcaccttgcggagagatgggctgtcccccaacattgagccggtacatcgtttggagacccgtcacaggatctatgccatattgcacattgtccccgccattggcagatgtaggtgtcggtgttgtgaagatgtcaggcgtgggcacaatctcaatcccattcacaaatgcataagacccgtttcgtgtggacggggcaaaggtgagttttaggctgcttgaagtgacattaaccgagaattctcgaaagaagtaggcagagcttgttgccagagcagtttgtgatgcgttgaagttgtctaaaaggatcagattgttggttgtgacaccaaagtaggcatttgcagaatcaaggttcccattataattagttggatagaagtgtaggcgcacgaacatgcggcctgggctgacagggaaggaataggtgtaatttgaagtgaagaatcgagcagtcatgtaaggcacgggtgatgggagcgaagggtcttggtatgaagccctggctacattgcctttcaccgatggcgcaaacttggagctagcatccccatcccagctccgattgtagctatcaggttgcacaccagaggctccacaattcagaaagattggagcagaggccgtggaattgttatcagccgccatggcaatcgataggagggctgacagtgtgagccattggatggtagctagtaggcttgggtgcatcattgaagtggtggttggtgtatcaggatcaaaagtttgaggattcgttcacatcaatttgctataagagttgggaacacttgcataatgccttttctctgggtgggatttgaggcaaggaaaatgtagagtttggaggattgtactcttgtttactgaagaaagcacatccagatagctgtaatcctgtagattcacctgcaatcagagcaaacgaagggttcggaaattctgcaaattgtagattggaaagatgaataacaagaaatggatccctaataatagcacaagtttatctgtttagatgatAaaatattggaagcaaactgaatataaaccataccgagaagtactatgaaacacggtagtaatttctgctgaagagaacagaatttgaaagttacggcaaaaccttttggtttgatccattttctaggttattattattacaaatttcgcaccatctactgttacaaaaagagatgtgtcggacaccagaacattaagttgtcgatactgaacgcgacaaatcctttgtcaaaaactaatataagtcaacaggtaaaatgttagaaatttgtaactaaaaccaaaagaaaaatctaaaaagggaggaaaataaacacgatcaaagctccagaacgatcatttcgcatatggggaaaactaacagaataaaaatcgcccgtatttcgctagttccgatccccatctgcaaaaccggcgatcctgcagttctgctgatgagaagggatcataatactaagtactccaactccattgcatgcagcaaaacagaaatacaaagagaactcgatcgattagctcaactgatcaaccacccccaccccccaaacctcccagcccagatttggggtttttcgctgggccaaaatttcgcgccaagaatagcaaccccataaccaagaacgtacgccaggaatggcagccgcggcggccacggagcacaaccaatccaagcaggaagaactaacaggagaggagatgaagaggcaagagctagtacctcgtcgacctcgcggcgtcggagagggagagatggactccgcgcgccccgcggcagtttctagttgctgcgcgtgtttcggtggccaaaacgatggtgggaaatcgagctcgggtccgtagtggagttgag
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| CDS seq | atgatgcacccaagcctactagctaccatccaatggctcacactgtcagccctcctatcgattgccatggcggctgataacaattccacggcctctgctccaatctttctgaattgtggagcctctggtgtgcaacctgatagctacaatcggagctgggatggggatgctagctccaagtttgcgccatcggtgaaaggcaatgtagccagggcttcataccaagacccttcgctcccatcacccgtgccttacatgactgctcgattcttcacttcaaattacacctattccttccctgtcagcccaggccgcatgttcgtgcgcctacacttctatccaactaattataatgggaaccttgattctgcaaatgcctactttggtgtcacaaccaacaatctgatccttttagacaacttcaacgcatcacaaactgctctggcaacaagctctgcctacttctttcgagaattctcggttaatgtcacttcaagcagcctaaaactcacctttgccccgtccacacgaaacgggtcttatgcatttgtgaatgggattgagattgtgcccacgcctgacatcttcacaacaccgacacctacatctgccaatggcggggacaatgtgcaatatggcatagatcctgtgacgggtctccaaacgatgtaccggctcaatgttgggggacagcccatctctccgcaaggtgattctggattctatcgttcttgggataatgattctccttacatatatggtgctgcctatggggtgaccttctccaaagatggtaatgtcaccatcaaatatccaaatactgagccaaattacactgcaccagttgcagtctacgcaacagcaaggtcaatggggccaactgcacagatcaacctgaactacaatcttacatggatcttaccggttgatgcggggttcacctacctcttgaggttccatttctgtgagatccagtatccaataaccaaggtgaatcagagatcattttTcatttacatcaacaaccagacggcgcagaatcaaatggacgtcattgtttggagtggaggaattggcagaacaacatataccaactatgttgtcacaacggttggttctggccagacggacctgtgggtcgcgcttcaccctgatctttcaagcaaaccagagtattttgatgcaatactaaatggccttgaggtcttcaagctacaggaccttggaagaaataaccttgctgggctcaaccctccacttccaccaaagcctggtgtgaatcccaatgggggatctagtagaggtaaatcaaagagtgttgccccagcagccataggtggagcagtgggtggccttgccgtgttgttgattgcttgtgttggattgtgcatcatctgtagacgaaagaagaaggtagcaaaggatactggcaaatctgatgaaggacgctggactcctctcactgatttcaccaagtcacagtcagccacctcaggaaagacaaccaacacagggagccactcgatgctgccagccaatctttgccggcacttttcgtttgcagaaatccaggctgccaccaacaatttcgacaaatccttcctcctcggcaaaggtggatttggcaacgtttaccttggagagatagacagtggcactagagttgcaatcaagcgtgggaacccgctgtctgagcagggtgtccatgagttccagaatgagattgagatgctgtccaagctccgacaccgtcaccttgtgtctctaatcgggtactgcgaggataggaatgagatgattttgcagcttaccgagaaatctgatgtctactccttcggagttgtgctgttcgaggtcctgtgcgcccgcaacgccctgagcccatcgcttccgaaggagcaagtgagccttgcagactgggctctgcgttgccagaagaaaggtgttcttggcgagatcattgacccactcctcaaagggaagatcgctccccagtgcttcttgaagttcgccgagaccgcggagaaatgtgtggccgatcgcagcgtcgacaggccgtccatgggtgatgtgctctggaacctcgagtttgcgctccagctgcaggagagcacggaggacagtagcagcctgaccgaggggacgtcagcgagcacgtcgccgctggttgtggccaggctgcattcagatgagccgtcgaccgacgtgactactaccactacaacgacaacttctttgagcatcactgaccgtagcattgcgagcgtggagtctgatgggctgaccccaagcaacatcttctcccagctcatgacaccagatggaagatga
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| Protein seq | MMHPSLLATIQWLTLSALLSIAMAADNNSTASAPIFLNCGASGVQPDSYNRSWDGDASSKFAPSVKGNVARASYQDPSLPSPVPYMTARFFTSNYTYSFPVSPGRMFVRLHFYPTNYNGNLDSANAYFGVTTNNLILLDNFNASQTALATSSAYFFREFSVNVTSSSLKLTFAPSTRNGSYAFVNGIEIVPTPDIFTTPTPTSANGGDNVQYGIDPVTGLQTMYRLNVGGQPISPQGDSGFYRSWDNDSPYIYGAAYGVTFSKDGNVTIKYPNTEPNYTAPVAVYATARSMGPTAQINLNYNLTWILPVDAGFTYLLRFHFCEIQYPITKVNQRSFFIYINNQTAQNQMDVIVWSGGIGRTTYTNYVVTTVGSGQTDLWVALHPDLSSKPEYFDAILNGLEVFKLQDLGRNNLAGLNPPLPPKPGVNPNGGSSRGKSKSVAPAAIGGAVGGLAVLLIACVGLCIICRRKKKVAKDTGKSDEGRWTPLTDFTKSQSATSGKTTNTGSHSMLPANLCRHFSFAEIQAATNNFDKSFLLGKGGFGNVYLGEIDSGTRVAIKRGNPLSEQGVHEFQNEIEMLSKLRHRHLVSLIGYCEDRNEMILQLTEKSDVYSFGVVLFEVLCARNALSPSLPKEQVSLADWALRCQKKGVLGEIIDPLLKGKIAPQCFLKFAETAEKCVADRSVDRPSMGDVLWNLEFALQLQESTEDSSSLTEGTSASTSPLVVARLHSDEPSTDVTTTTTTTTSLSITDRSIASVESDGLTPSNIFSQLMTPDGR |
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| Function | Receptor-like protein kinase FERONIA [UniProtKB/Swiss-Prot:Q9SCZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0011550 | OsLima_05g0011550.01 | Chr05 | 15154433 | 15158234 | - | NAM | ||
| CDS seq | atgatgcacccaagcctactagctaccatccaatggctcacactgtcagccctcctatcgattgccatggcggctgataacaattccacggcctctgctccaatctttctgaattgtggagcctctggtgtgcaacctgatagctacaatcggagctgggatggggatgctagctccaagtttgcgccatcggtgaaaggcaatgtagccagggcttcataccaagacccttcgctcccatcacccgtgccttacatgactgctcgattcttcacttcaaattacacctattccttccctgtcagcccaggccgcatgttcgtgcgcctacacttctatccaactaattataatgggaaccttgattctgcaaatgcctactttggtgtcacaaccaacaatctgatccttttagacaacttcaacgcatcacaaactgctctggcaacaagctctgcctacttctttcgagaattctcggttaatgtcacttcaagcagcctaaaactcacctttgccccgtccacacgaaacgggtcttatgcatttgtgaatgggattgagattgtgcccacgcctgacatcttcacaacaccgacacctacatctgccaatggcggggacaatgtgcaatatggcatagatcctgtgacgggtctccaaacgatgtaccggctcaatgttgggggacagcccatctctccgcaaggtgattctggattctatcgttcttgggataatgattctccttacatatatggtgctgcctatggggtgaccttctccaaagatggtaatgtcaccatcaaatatccaaatactgagccaaattacactgcaccagttgcagtctacgcaacagcaaggtcaatggggccaactgcacagatcaacctgaactacaatcttacatggatcttaccggttgatgcggggttcacctacctcttgaggttccatttctgtgagatccagtatccaataaccaaggtgaatcagagatcattttTcatttacatcaacaaccagacggcgcagaatcaaatggacgtcattgtttggagtggaggaattggcagaacaacatataccaactatgttgtcacaacggttggttctggccagacggacctgtgggtcgcgcttcaccctgatctttcaagcaaaccagagtattttgatgcaatactaaatggccttgaggtcttcaagctacaggaccttggaagaaataaccttgctgggctcaaccctccacttccaccaaagcctggtgtgaatcccaatgggggatctagtagaggtaaatcaaagagtgttgccccagcagccataggtggagcagtgggtggccttgccgtgttgttgattgcttgtgttggattgtgcatcatctgtagacgaaagaagaaggtagcaaaggatactggcaaatctgatgaaggacgctggactcctctcactgatttcaccaagtcacagtcagccacctcaggaaagacaaccaacacagggagccactcgatgctgccagccaatctttgccggcacttttcgtttgcagaaatccaggctgccaccaacaatttcgacaaatccttcctcctcggcaaaggtggatttggcaacgtttaccttggagagatagacagtggcactagagttgcaatcaagcgtgggaacccgctgtctgagcagggtgtccatgagttccagaatgagattgagatgctgtccaagctccgacaccgtcaccttgtgtctctaatcgggtactgcgaggataggaatgagatgattttgcagcttaccgagaaatctgatgtctactccttcggagttgtgctgttcgaggtcctgtgcgcccgcaacgccctgagcccatcgcttccgaaggagcaagtgagccttgcagactgggctctgcgttgccagaagaaaggtgttcttggcgagatcattgacccactcctcaaagggaagatcgctccccagtgcttcttgaagttcgccgagaccgcggagaaatgtgtggccgatcgcagcgtcgacaggccgtccatgggtgatgtgctctggaacctcgagtttgcgctccagctgcaggagagcacggaggacagtagcagcctgaccgaggggacgtcagcgagcacgtcgccgctggttgtggccaggctgcattcagatgagccgtcgaccgacgtgactactaccactacaacgacaacttctttgagcatcactgaccgtagcattgcgagcgtggagtctgatgggctgaccccaagcaacatcttctcccagctcatgacaccagatggaagatga
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| Protein seq | MMHPSLLATIQWLTLSALLSIAMAADNNSTASAPIFLNCGASGVQPDSYNRSWDGDASSKFAPSVKGNVARASYQDPSLPSPVPYMTARFFTSNYTYSFPVSPGRMFVRLHFYPTNYNGNLDSANAYFGVTTNNLILLDNFNASQTALATSSAYFFREFSVNVTSSSLKLTFAPSTRNGSYAFVNGIEIVPTPDIFTTPTPTSANGGDNVQYGIDPVTGLQTMYRLNVGGQPISPQGDSGFYRSWDNDSPYIYGAAYGVTFSKDGNVTIKYPNTEPNYTAPVAVYATARSMGPTAQINLNYNLTWILPVDAGFTYLLRFHFCEIQYPITKVNQRSFFIYINNQTAQNQMDVIVWSGGIGRTTYTNYVVTTVGSGQTDLWVALHPDLSSKPEYFDAILNGLEVFKLQDLGRNNLAGLNPPLPPKPGVNPNGGSSRGKSKSVAPAAIGGAVGGLAVLLIACVGLCIICRRKKKVAKDTGKSDEGRWTPLTDFTKSQSATSGKTTNTGSHSMLPANLCRHFSFAEIQAATNNFDKSFLLGKGGFGNVYLGEIDSGTRVAIKRGNPLSEQGVHEFQNEIEMLSKLRHRHLVSLIGYCEDRNEMILQLTEKSDVYSFGVVLFEVLCARNALSPSLPKEQVSLADWALRCQKKGVLGEIIDPLLKGKIAPQCFLKFAETAEKCVADRSVDRPSMGDVLWNLEFALQLQESTEDSSSLTEGTSASTSPLVVARLHSDEPSTDVTTTTTTTTSLSITDRSIASVESDGLTPSNIFSQLMTPDGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0011550 | OsLima_05g0011550.02 | Chr05 | 15154131 | 15155800 | - | IsoSeq | ||
| CDS seq | aatcccaatgggggatctagtagaggtaaatcaaagagtgttgccccagcagccataggtggagcagtgggtggccttgccgtgttgttgattgcttgtgttggattgtgcatcatctgtagacgaaagaagaaggtagcaaaggatactggcaaatctgatgaaggacgctggactcctctcactgatttcaccaagtcacagtcagccacctcaggaaagacaaccaacacagggagccactcgatgctgccagccaatctttgccggcacttttcgtttgcagaaatccaggctgccaccaacaatttcgacaaatccttcctcctcggcaaaggtggatttggcaacgtttaccttggagagatagacagtggcactagagttgcaatcaagcgtgggaacccgctgtctgagcagggtgtccatgagttccagaatgagattgagatgctgtccaagctccgacaccgtcaccttgtgtctctaatcgggtactgcgaggataggaatgagatgattttggtatatgactacatggctcatgggacacttcgagaacacttgtacaacaccaagaacccaccattgtcgtggaagcagaggctggagatctgcatcggcgccgcccgtgggctgtattacctgcacacgggtgcaaagcaaaccatcatccaccgcgatgtcaagaccaccaacattttgctggatgacaagtgggttgccaaggtttccgacttcgggctgtccaaggccggtccaaacgtggacaacacccatgtgagcacagtggtgaagggcagcttcggataccttgatcctgagtacttccgacggcagcagcttaccgagaaatctgatgtctactccttcggagttgtgctgttcgaggtcctgtgcgcccgcaacgccctgagcccatcgcttccgaaggagcaagtgagccttgcagactgggctctgcgttgccagaagaaaggtgttcttggcgagatcattgacccactcctcaaagggaagatcgctccccagtgcttcttgaagttcgccgagaccgcggagaaatgtgtggccgatcgcagcgtcgacaggccgtccatgggtgatgtgctctggaacctcgagtttgcgctccagctgcaggagagcacggaggacagtagcagcctgaccgaggggacgtcagcgagcacgtcgccgctggttgtggccaggctgcattcagatgagccgtcgaccgacgtgactactaccactacaacgacaacttctttgagcatcactgaccgtagcattgcgagcgtggagtctgatgggctgaccccaagcaacatcttctcccagctcatgacaccagatgga
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| Protein seq | NPNGGSSRGKSKSVAPAAIGGAVGGLAVLLIACVGLCIICRRKKKVAKDTGKSDEGRWTPLTDFTKSQSATSGKTTNTGSHSMLPANLCRHFSFAEIQAATNNFDKSFLLGKGGFGNVYLGEIDSGTRVAIKRGNPLSEQGVHEFQNEIEMLSKLRHRHLVSLIGYCEDRNEMILVYDYMAHGTLREHLYNTKNPPLSWKQRLEICIGAARGLYYLHTGAKQTIIHRDVKTTNILLDDKWVAKVSDFGLSKAGPNVDNTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARNALSPSLPKEQVSLADWALRCQKKGVLGEIIDPLLKGKIAPQCFLKFAETAEKCVADRSVDRPSMGDVLWNLEFALQLQESTEDSSSLTEGTSASTSPLVVARLHSDEPSTDVTTTTTTTTSLSITDRSIASVESDGLTPSNIFSQLMTPDG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.635697 | 0.285507 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0318700 | RBH | 11.204187 | 10.431804 | 5.226774 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g25450 | RBH | 6.819283 | 7.052899 | 1.213434 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0318700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0011610 | RBH | 3.667892 | 14.974699 | 2.695651 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0011630 | RBH | 1.381175 | 6.521722 | 3.506711 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0011580 | RBH | 6.908697 | 9.808280 | 6.895586 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0011640 | SBH | 1.671042 | 0.368857 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0011620 | RBH | 12.236970 | 13.849247 | 8.841599 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0217900 | RBH | 13.2362515 | 30.4232025 | 0.2619745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011370 | RBH | 1.828888 | 0.611296 | 1.496974 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0227500 | RBH | 9.810548 | 20.8814335 | 1.140823 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0011470 | RBH | 1.348932 | 19.077026 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0011600 | RBH | 33.066448 | 38.363483 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0011620 | RBH | 5.081908 | 1.851608 | 1.154559 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0011640 | SBH | 2.110161 | 7.054596 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G011320 | RBH | 3.013421 | 1.356248 | 2.232421 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0011610 | RBH | 5.892210 | 28.277153 | 8.876738 |
