Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0010170 | OGI:05032310 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:12517798-12520533 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgatggtgatctcttctggtagtgatctgctcttccttgttgatggaggatctcatcaccccagctcccccgaatggttggaactttgagtatgggaaatctttctcctcgcttgtttctaatttgttcagttgtccggtgcatttctctccgttctttggctcccggcctttcattcttgtggtggatttctctcgtttcaattttcacctctcttctaagtctgttgccattgctctccaagcatgcttgggtggatctcctcatggttttagggtgaagcatctcaaaaatcactgttattccttcctggtctgcaacaaaaatattgggctctatgttaactccattagagactttacttgcaaagattttcatgttcgtttctttctttggggtaatggaggccccaattggaaaagagaatatatgctttggcaaaaagaggaagcagattgctggactttggttactcgaaaaaagtcctctgttaagtctagaactaagaatgcagtctgggttgctaaaggaaaatcacatattgacaagccttcagttttcaagagactttttcatgctaatggtgatcctttcgttcgacaatcgttccagttcattgggtcatcatcaggtacctcttctcagtctttgctgatttccaagaaatttgttttacatgatattggttcggctagcctgcatgttgataccctttcgaagattaatgtggttaatgataatttaagcccgagaattgatcctagtttaccttcgggtggtaatgttacgcaatcagtggtctctttatgtaatacaaataatggcttttcgaacctggattttgattctagtaagacgttggaatttcattctgatcagcctgtggattctatctgtaatcgatgtttggcccatggacacgtgtcctcgctctgctccagttccattcgctgtcgggcctgcttcggttatggtcacattgcaaggttttgtctcaagcgaaaatccaaagaaagctggattcttcggctcacggcccactcggaaggaaaaaattttcttttggaaaggacccctttgtctccggcagtcacgcccctcgctattccagcttcctttcctgttgcacagcctcctcctcccaaaaccccaatccagctctctctcccagcaatggcgaacctacaagacgctgattttcgaccggagttgtttgtgccggatggcgcaaacatcgaagttccttgggaggaaggactccaagggctgatttcactttgcaaggctgcctcctgaggtcgcatgatgagtatgcggcggtggtgatcgagccgcagccaccagctcatctcgttggccagctcatccaagaagtcaccaacatcatcaccaaccagcatcataagcatgtggtcagagttcaaaggtaccctcttgcgctctgcattgttcagctgccgtctatgctagagcgtgatatcttggtgggtagtgctccttttctgcttggcaactggtttcatggttctttcgttaggcatgatcagctttccaactggagaaactctccttactccagagagggttggctcctaatcttgggagttcccctaaatctgaaaactaggccgatcattgagaatatcactaacctttgtggggagtttgtggattggcactagatggacagagttctgggaagagtgctagtaaaagccagatataagtctgccagtgatgtgcctagtaggattgtgttaggagatactatggcctatgggggaactagacagacatggacttttcatgtctatattctgaatggtgaaccccctgacatgttccccgaagatgaagacctactcccaatatggcagatgctacccccaccaaaccaacagaaccagaatcatcatgaacaaaacatgcacaatgctaatgatgctgatgttcccatcaatcctgacattggcaatgaggggcaagatgacaatcacatgattcttgatcagaaccagaaccagggcaatcaagcacatgattcagtctctgtcgaagatttcaccatggaaatctctgctggatcttccaactggatggaaatttagaacataggttggcagatcattccctatggtttgcctttgccctctctgcccctcagaagtctgcctttggaattttgcattgctgttgccaatggagttttcaggaagttgcttttggccctccagccacacctgtacaggccagtgcatttgatgatagagtggtcgctagtcacaactggatggaatgtcaaggtttcattctctctttttcaggaatgggaggatagtcccagccctattaaacgtcgcaagatcaatctgttgagttcaaaagtggcaagggctcttccattttccaaatctgatgagcaagtaaaaatcaatgcagttcaacccaaggttaggaaagcaaagaataaggtcccagtctctgcagagaacttgagaagaagccctcgtttcttaggtcaggaaaagatggacctggctttcgacacaccaaagaagaagaccaaagttcagcctgctaccaggttactcaccttggaccccaatgctcaaagttcaaaaaggctccctccaccgattcctgtcaagcaactgcataagataggaactaaacaatgtggtctgcttcctgaggaagtgacctctgaaaagcttctcaagccaaagaaatga
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| CDS seq | atggcgatggtgatctcttctggtagtgatctgctcttccttgttgatggaggatctcatcaccccagctcccccgaatgttgtccggtgcatttctctccgttctttggctcccggcctttcattcttgtggtggatttctctcgtttcaattttcacctctcttctaagtctgttgccattgctctccaagcatgcttgggtggatctcctcatgtaagacgttggaatttcattctgatcagcctgtggattctatctgtaatcgatgtttggcccatggacacgtgtcctcgctctgctccagttccattcgctgtcgggcctgcttcggttatggtcacattgcaaggttttgtctcaagcgaaaatccaaagaaagctggattcttcggctcacggcccactcggaaggaaaaaattttcttttggaaaggacccctttgtctccggcagtcacgcccctcgctattccagcttcctttcctgttgcacagcctcctcctcccaaaaccccaatccagctctctctcccagcaatggcgaacctacaagacgctgattttcgaccggagttgtttgtgccggatggcgcaaacatcgaagactccaagggctgatttcactttgcaaggctgcctcctgaggtcgcatgatgagtatgcggcggtggtgatcgagccgcagccaccagctcatctcgttggccagctcatccaagaagtcaccaacatcatcaccaaccagcatcataagcatgtggtcagagttcaaaggtaccctcttgcgctctgcattgttcagctgccgtctatgctagagcgtgatatcttggtgggtagtgctccttttctgcttggcaactggtttcatggttctttcgttaggcatgatcagctttccaactggagaaactctccttactccagagagggttggctcctaatcttgggagttcccctaaatctgaaaactaggccgatcattgagaatatcactaacctttgtggggagtttgtggattggcactag
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| Protein seq | MAMVISSGSDLLFLVDGGSHHPSSPECCPVHFSPFFGSRPFILVVDFSRFNFHLSSKSVAIALQACLGGSPHVRRWNFILISLWILSVIDVWPMDTCPRSAPVPFAVGPASVMVTLQGFVSSENPKKAGFFGSRPTRKEKIFFWKGPLCLRQSRPSLFQLPFLLHSLLLPKPQSSSLSQQWRTYKTLIFDRSCLCRMAQTSKTPRADFTLQGCLLRSHDEYAAVVIEPQPPAHLVGQLIQEVTNIITNQHHKHVVRVQRYPLALCIVQLPSMLERDILVGSAPFLLGNWFHGSFVRHDQLSNWRNSPYSREGWLLILGVPLNLKTRPIIENITNLCGEFVDWH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0010170 | OsLima_05g0010170.02 | Chr05 | 12519484 | 12520533 | + | NAM | ||
| CDS seq | atggacagagttctgggaagagtgctagtaaaagccagatataagtctgccagtgatgtgcctagtaggattgtgttaggagatactatggcctatgggggaactagacagacatggacttttcatgtctatattctgaatggtgaaccccctgacatgttccccgaagatgaagacctactcccaatatggcagatgctacccccaccaaaccaacagaaccagaatcatcatgaacaaaacatgcacaatgctaatgatgctgatgaatgggaggatagtcccagccctattaaacgtcgcaagatcaatctgttgagttcaaaagtggcaagggctcttccattttccaaatctgatgagcaagtaaaaatcaatgcagttcaacccaaggttaggaaagcaaagaataaggtcccagtctctgcagagaacttgagaagaagccctcgtttcttaggtcaggaaaagatggacctggctttcgacacaccaaagaagaagaccaaagttcagcctgctaccaggttactcaccttggaccccaatgctcaaagttcaaaaaggctccctccaccgattcctgtcaagcaactgcataagataggaactaaacaatgtggtctgcttcctgaggaagtgacctctgaaaagcttctcaagccaaagaaatga
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| Protein seq | MDRVLGRVLVKARYKSASDVPSRIVLGDTMAYGGTRQTWTFHVYILNGEPPDMFPEDEDLLPIWQMLPPPNQQNQNHHEQNMHNANDADEWEDSPSPIKRRKINLLSSKVARALPFSKSDEQVKINAVQPKVRKAKNKVPVSAENLRRSPRFLGQEKMDLAFDTPKKKTKVQPATRLLTLDPNAQSSKRLPPPIPVKQLHKIGTKQCGLLPEEVTSEKLLKPKK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0010170 | OsLima_05g0010170.01 | Chr05 | 12517798 | 12519483 | + | NAM | ||
| CDS seq | atggcgatggtgatctcttctggtagtgatctgctcttccttgttgatggaggatctcatcaccccagctcccccgaatgttgtccggtgcatttctctccgttctttggctcccggcctttcattcttgtggtggatttctctcgtttcaattttcacctctcttctaagtctgttgccattgctctccaagcatgcttgggtggatctcctcatgtaagacgttggaatttcattctgatcagcctgtggattctatctgtaatcgatgtttggcccatggacacgtgtcctcgctctgctccagttccattcgctgtcgggcctgcttcggttatggtcacattgcaaggttttgtctcaagcgaaaatccaaagaaagctggattcttcggctcacggcccactcggaaggaaaaaattttcttttggaaaggacccctttgtctccggcagtcacgcccctcgctattccagcttcctttcctgttgcacagcctcctcctcccaaaaccccaatccagctctctctcccagcaatggcgaacctacaagacgctgattttcgaccggagttgtttgtgccggatggcgcaaacatcgaagactccaagggctgatttcactttgcaaggctgcctcctgaggtcgcatgatgagtatgcggcggtggtgatcgagccgcagccaccagctcatctcgttggccagctcatccaagaagtcaccaacatcatcaccaaccagcatcataagcatgtggtcagagttcaaaggtaccctcttgcgctctgcattgttcagctgccgtctatgctagagcgtgatatcttggtgggtagtgctccttttctgcttggcaactggtttcatggttctttcgttaggcatgatcagctttccaactggagaaactctccttactccagagagggttggctcctaatcttgggagttcccctaaatctgaaaactaggccgatcattgagaatatcactaacctttgtggggagtttgtggattggcactag
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| Protein seq | MAMVISSGSDLLFLVDGGSHHPSSPECCPVHFSPFFGSRPFILVVDFSRFNFHLSSKSVAIALQACLGGSPHVRRWNFILISLWILSVIDVWPMDTCPRSAPVPFAVGPASVMVTLQGFVSSENPKKAGFFGSRPTRKEKIFFWKGPLCLRQSRPSLFQLPFLLHSLLLPKPQSSSLSQQWRTYKTLIFDRSCLCRMAQTSKTPRADFTLQGCLLRSHDEYAAVVIEPQPPAHLVGQLIQEVTNIITNQHHKHVVRVQRYPLALCIVQLPSMLERDILVGSAPFLLGNWFHGSFVRHDQLSNWRNSPYSREGWLLILGVPLNLKTRPIIENITNLCGEFVDWH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g21120 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0010220 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0010260 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0010170 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010260 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0010340 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0183600 | RBH | 0.0048115 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0010190 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0190300 | RBH | 0 | 0 | 0.2546705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0010240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0010260 | RBH | 0.0 | 0.0 | 0.0 |
