Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0009230 | OGI:05025640 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:9644486-9653728 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtTGttttggacgaacgcgagctgacagaggggagagagagagagagagagagagagagagagtcagagagatgcggcgttgcagttgctggcagctattgtggctggtgcttgtgtgctcatggcggatcgctgcagctcaggctcaggcggcaccaagaaccgatccaaccgaaggtaagctccgcaatcacgctcgtatgccctcccatggatgcatttgcgtcttctttggtttcctcctccatctatggcaggagctagtaccaatcttggttgctacagtgtctttcttgcccgatgcatgccaaaagagttactagtagatcgaaacaagatgatttcgatacgggaattcgattcaaaatcgagcttgcagccgctgccgtgcccgcttgagctggagctcatcgcatgatctgtcgattcggtacacgtgtggaggagagagattgatgagtggggataagatAAGaacggggttcaggagaaggggaaaggtaggggttgattggaaccactcttctctaattttcctcggttccaaacctgttcacacacacaaagccatgggtgggtcggtttggttcgatgtcctgtcagaattttcgcagtggcagtgtctagttccacagccaaattttgttaagtatacgtgcacacatttggagtattaaacgcagactaataacaaaacaaaattacagattccgcatgtaaactgcgagacgaatctattaagcctaattaatccatcattagcaaatgtttactgtagcaccacattgtcaaatcatggcgtaattaggcttaaaagattcgtctcacaatttacatacaaactgtgcaattggttttttcgtccacatttaatgctttatgtatgtgtccaaacatttgatgtgacggaatttttgaacatttgctaatgacggattaattagacttaatagatttgtctcgcagtttacaggcggaatctgtaatttaTtttgttattagtctacgtttaatacttcaaatgtgtttccgtgtacgtcaaacaaattttggccaaagaactaaacacggccacagcctaaggatgttttggcactgccacaacattgtagcgtctgccttgagttgacacttaacagagataattatggggtttaatttgatgctaattttattattactccaaaatatttggcacaacatgatagtagcatctgaatgcttcttttttacacgaggttagttagtagaggtatttttagtgattctctagccaaaagttgttggcctaaacagtgcatttgtcaaaagtgctaagtaaatagaaacgcagagtaataattgtgatatggatgaataggtactcctacttagtacgaaaattgtttgtaggctataatctcaaaacagtgtttagtttactactcagcttacttcttcttgtttttttttacatttttatgtttacatgttattttcatacttttaattatatcctctgttttactttcccacgatgcaaAGagagcataacgccgagttaaccgtgcagcggcagctctgaacacaatcctgggaagatggggcaagaaagCATcatcagagtggaacatcagtggcgagctttgtagtggcctggcttccgacaagaccaactgggatgactaccccaacatcaacccatttatcaagtgtgactgctcctacaataacaactctgtctgtcacattatcaaattgtatgtacgcccctcgtcttattttgatcagctgcacacctggtgcttgtttactactccatacttcctctgctttttaatgcatggcgatgttgaattttggacacacgtttgaccatttgtcatattcagAaagaatttgcaaatatgAaaaaatgtaagtcatccttaccttaataaatgttaattatgtaattttttaataagccaaatggtcaaagatatttccaaaagtcaatgataaaacaagtcacaacaaaataaatgttaattatgtaattttttaataagatatttcaaaaagtcaatagtcattagtttagaaaagtaacattgcttctggctgcataatttttgtagtagtgtaaaaaactaaaccaggcacgattaataggaaagaatcagattcagtggcttgtggttagatagtctggttgatcagtgttacccaaaaATatttgaatgcaccaacaatgttctaaactcacatccactgggttaggaataataatgatattggaaagatccaaactcacatccaaaaatatttgaacttgcaagagaacctcgtatcattatattaggaagaagaaagggtagaaaaccctaagtacacacaccctcgcacccttaactcttagagtacatgtgcgcctataacaacagattacaaacgaccacgacctgaacataaccactgggttctagggcagtaaagaacgaaaacccttgagccccagccaaacaccaaagtcggccctcttcctttgcaagcagtacggggcctgccaagttttggataacaccataaagaacaaagcgatttcgatgcttccaaagcatccaagcaccaataaatgatgagagggttgaggccctgacgtaccaggccgctaattgcctcactggcctgttccaccattcctcaaagcactgatctgcaagcataggggccaaggtgttcagatcatacctctatagaaggatgaacaaaaattgtcttgcaaagatacagctcgtgagcaagtgaccagttgtctcgtcatcgatatgttcacaggactataaatatttacaaacaataagatataatctaggtgtgacgattaacaatagaaattttctttcttcgaacatgcaggagatctgcatatcatttcattaagcaaggaaaaaataaccgaaaaaaggacttacaagacacccacacggaaaagagaggaaaaaacaaagagaaagaaacaccaattaacaaacaactctatgagccctcagcctcaaccctagtgaccagctgctgaaggttggcagctcctgctgtgcaccaaaggcataacaaagggacataataccattgttgtggtgttggagttgtgcgtgcatgactttacccacttgaattcaaattatgatatccataattatggttgtgtgcatcggtagttggtgctaaggccaaaagttatacttgcaatctcaaataacaaagggaaaaaagcaatgttatttgatctacaagtttttagttgatgacttattaatttgagatcgtttacattcctaaatatgtgttgcagagctcaatgatcttttgaattttccatacaactttgggtgaaaacAaaaaACTTTATATAGAAGTTGTAGAGCTCAATGATATTTAGAACTTTGTAGTTGATAATTTTCTATTTGAAACCATCTAGAGTGTCAAATACGCCCTAAAGGGAGAAGTCCTCCCATATAACGCATGTGCTTGTATTTCACATGCAAATCACATGATTTTGTATTGTGGCTGTGCATAATTACCATGGAAAATACGAAATATTTTTTACAATATTTTTTTGGCAACTAAAAATCAAAAACTAGAACTAAACTATCACTCCTAGTTCATGCCTTGAACCGTTCAAACTGGTTGACACTCCcccaagtacattgttgattgtgtagtgtatgttcagaaacctgcaatgatgccagttataaatcgacactcatgcccatttctgtgctagtgaatcttatctaccttgactgtcatctttttactgcaaccatgaaaactctataaaaccctctacctttccatatcagttttggatggtaaagagatttttttcaataacaggatacataggacttctataaaattttgcttgtatgtttccttgtttgtggttcgatattaatgtttccttagcatagaggaattctccagaccagttcatctcatattttgtattttcttatgtgcttattttccttttacttatcgatattatttatttgtttatgcaggagggtatataagttaaatgttgttggtcaattaccttcagagcttcagaatttcacctatatggaggacctgtatggtatctgtgtgactatgtccattcttgaaaaataagaattaagctgtagattaatgtttcacagagactataaattgaacatcatgcatgattgaaatgttcaacttctgatttcctggcaaaaagcagcaaatagtagtctggtatgccttttttctctttcggctatttactttttgtttctggtcttgtttcaggaacctggcttataattacttgagtggtgtggtgccatccttcattggaaagtttacttccatggaatatttgtaggagttataagttctcttatagatttatgttccatccattgTttttttctattaattgtctttcatcatttattaaaggaacttggctttcaatccattatccgggcaacttccgaaggaaattgggaatctcacaaatcttctcatgttgtaagaggtcttttcttagttgttagataaatcctcaactatattatgtactgcctgaactattagaattatacatcagatattaattgcataacttctgacaactaaacttataaatgaaattgtaactcttttatattaggcacagcgatgttacctcccttttctcagtatttcacatatgacttgtttgagtaaaattgacctgatgaagacttgaaaatactccaatggagaatattagggggggtccgggggtcagatggctcatctgcaaaacaatgcctttttttctgctattatttgaagagaaataatttatatcagtcttgaaatatttcattttgattcaggggagttagctttaacaattttacgggtgaacttcctgaagaactgggaaatttggtgaaacttgagcagttgtaagatgcttgacttctagcttccatttcctatacttctaaaagaactataattcggaagagaaagatctgttgttgaacgtgataatttcaatgacaggtacattgatagttctggattcagcggtccattccctttgacgttttcaaagcttcagaggctgaagatcttgtactgttaataacagagactggtcagctgtttatgttattttgtgttctcatatgcttaatatcaaatattttggtgtgcttgcaggagggcacaagataatgatttcacaggcaaaatacctgataattttggcagcatgagtagtttggaagatatgtaagatcagctatattaagttgttaataatacattattcagtgtatattatgcagtaacagatggaaactgtgcaatataaattttttgtatatgtttctcttctctgtcctgactaaacagacgtgcacacatgcatgccaataagctggccctatggcatgttaatgcgtagagtttttatctagaatagttgacatggagagcttctttttttattatattaaaatagacaggcatatctccacattttatcttaaagtatgaacttgtagggctttccaaggaaattcatttgaaggaccaatCccagcaagtttgtcaaaattaaccaaattaacaaacttgtaagtacattatcttttttttgtgctatcaatctctagagggttgagattgtcaagcttgataactgcttcatgaaacgcaaatgagcaggcgaattggtgatatcgtaaatgggagctcttcactggcttttataagcaatctcacctctttgagcaacatgtatgtgattcttttaaccaaattcatgcaatattgataaagttacatgtaacgagattggatttcattgttacaggATattaaggaactgtagaatatctggtaatcttggactagtagatttctcgaagtttgcaaatctaacatatctgtaagttatcattatggaccatgttccaatttatgattctatcgcgctcctttcctgtatttttgaagaatatgttcaagtaatattactgttgcactgcacagggacttgagttttaacaatttcactggccaaattcctcaatccatcctgaatctgggaagtcttgaattcctgtatggaatccatctttatattaattcaattgatacaaacacatgttaacattatctccattattcatcatcttttactgtacccaatccagttttcttgggaacaacagccttacaggaagtttaccagatccaataagctcttcgttaaaaacgttgtacgtcaaaagatcaccatattagtatagcaggaaatattttcataatacaatgttgtatttgttccaaatgtaataattctagtttgtttgtagagatttttcctacaaccagctcagtggaagatttccttcttgggtcaaccagaacaatttgcaattgtgagtgtaaaattctgaaatttgtgttgctcatgaaaaaaaaatgttctgacatttttattttccataggaatttggtggcaaacaactttgttcttgtgggcactaacagcaggtacttataaccttgtgttatattttttcaaaagataaattgtaacaatttcttatacttgtaattttcaattcaaattgtgcacagtattctaccttcaggtctaggctgcctccaacaagacactccttgtttccgaggatctccagaatgtatatgtcttgctctttatcaaccatagcaattaacaggattacatgaattgcaataatggttatAattttgcaattctaattgcagattactccttcgcagttgactgcggcagtaatagttctacgagtgcctcagataatactatttttgaagcagatcccacgagccttggcactgcagcatattatgtcaccagtcagacaagatGgggtgtcagtagtgttgggaacttcttccagggcacAaatggaatggatagaatatatagctcctccaagcattttcagaatactgttgattcaaaactgtttgagactgctaggatgtcaccttcatcactgaggtactatggtcttggacttgagaacggaaactacacagttctgcttcaatttgcagagttctcttttacggaaacaccgacttggcaaagcttaggaaggagagtttttgacatatatgttcaggtacaaattgaatgcattgtaaatcttttagttctttatctgaatgtattattgaaattggtatagggtgcactgaaagaaaagaatttcgatataaggaagacagcaggtggaaaatcttttactgcagttaacaggagctacacagcaactgtgtcgaaaaacttcattgagatccatctcttttgggctggcaaaggcacttgttgtgtacctactcaaggtcactacggaccgacgatctcagcattaagcatcactccaagtaagcacaatatttttagttgactgcaactaggattatattggcttcttatgtgtaaaaccattttcttcagattttactcccactgtacggaatggggtaccaaaaaagagaagtaaagcaggtgcaattgttggaatagtgattggtgcatcagttttaggattggcagccttatttggaatatttttcttagtaaagaagcgaagaacaatggcacaacaaagaaaaggtaccatctattattgtgcagcaattgggacattgtaactttcaaatgttttattctatcctgaaaaaaaattgcagaactgtatgacctggttggacggcctgatgtctttagtagcgccgaactcaagctagctacaaataatttcagttcacaaaacattcttggagaaggcggatatgggccagtgtataaggtttctgtttcatacaactattcatgtgaaattataagttcataacgtaacattgatatttcattttgtgtttcaatgcaaccttttggaaccctagttggtctatgcaatatgcatgtaattttaggaaggttcttgctttttcagggtaagctacctgatggaaaagttgttgctgtcaaacaactttcagaatcatctcatcaagggaaaagccagtttgtgacagaggttgctacaatttctgctgtgcaacatcgtaatcttgtgaaattgcacggctgctgcattgatagtaaatcacccttgctggtttatgagtaccttgaaaatggaagcctagatcaagcacttttcagtgagttcacctgcaaattggcagcacctgttttatttcactaagaaaactctgttgtttaatgaactcttcagcattttgacatgaactgaattctcaagggcttattgagttatttatgcttgtacaggagacacaggcttaaaactagactggacaaaacgctttgagataattttaggcattgcaagaggcctaacttatcttcacgaggagtcgagtgtgcgcattgtgcatagggacatcaaagccagcaatgtactactcgacactgatctcaccccaaagatatcggactttggactcgccaagctatatgatgagaagaagactcatatcagcacagcgattgccggcacattgtaagaacatttttatcatctctgttcttgtggctgtaacttcaaaacaaaagctaattgtaacttgtctgtcattttcaagtggctatctggcacccgagtatgcaatgagaggtcgtttgactgaaaaggctgatgtttttgcattcggggtggtcgcgctcgagactgttgctggtcggtcaaacatcgacaactcccttgaggaaagcaaggttaatctctttggatgggtaagttgatcaatgatccttttgcaacctagaatgaaccaattcattcatgtccataaccttctgattactaaaactatgctcatttcaaggcatggagcctgtatgaaaaggagcaagctctagaaatcgttgacccaagaatcaaagagttcagcagggatgaagccttgagagtcatccatgttgcactcatgtgcacccagggctcaccgcaccagcgacccccgatgtcaaaggtcgtggccatgctcaccggagacgttgaggtggctgaggtgatcatgaagccgagctacatcacggagtggctgcacagggaaggggacagcagctacttcacaaactacgcaggatctgccacccccgagttcagtgggcacaaagagagtgaactttcgtttatcagttag
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| CDS seq | atgcggcgttgcagttgctggcagctattgtggctggtgcttgtgtgctcatggcggatcgctgcagctcaggctcaggcggcaccaagaaccgatccaaccgaagcggcagctctgaacacaatcctgggaagatggggcaagaaagCATcatcagagtggaacatcagtggcgagctttgtagtggcctggcttccgacaagaccaactgggatgactaccccaacatcaacccatttatcaagaacctggcttataattacttgagtggtgtggtgccatccttcattggaaagaacttggctttcaatccattatccgggcaacttccgaaggaaattgggaatctcacaaatcttctcatgttgggagttagctttaacaattttacgggtgaacttcctgaagaactgggaaatttggtgaaacttgagcagttgtacattgatagttctggattcagcggtccattccctttgacgttttcaaagcttcagaggctgaagatcttgagggcacaagataatgatttcacaggcaaaatacctgataattttggcagcatgagtagtttggaagatatgcgaattggtgatatcgtaaatgggagctcttcactggcttttataagcaatctcacctctttgagcaacatagatttttcctacaaccagctcagtggaagatttccttcttgggtcaaccagaacaatttgcaattgaatttggtggcaaacaactttgttcttgtgggcactaacagcagtattctaccttcaggtctaggctgcctccaacaagacactccttgtttccgaggatctccagaatattactccttcgcagttgactgcggcagtaatagttctacgaatcccacgagccttggcactgcagcatattatgtcaccagtcagacaagatGgggtgtcagtagtgttgggaacttcttccagggcacAaatggaatggatagaatatatagctcctccaagcattttcagaatactgttgattcaaaactgtttgagactgctaggatgtcaccttcatcactgaggtactatggtcttggacttgagaacggaaactacacagttctgcttcaatttgcagagttctcttttacggaaacaccgacttggcaaagcttaggaaggagagtttttgacatatatgttcagggtgcactgaaagaaaagaatttcgatataaggaagacagcaggtggaaaatcttttactgcagttaacaggagctacacagcaactgtgtcgaaaaacttcattgagatccatctcttttgggctggcaaaggcacttgttgtgtacctactcaaggtcactacggaccgacgatctcagcattaagcatcactccaaattttactcccactgtacggaatggggtaccaaaaaagagaagtaaagcaggtgcaattgttggaatagtgattggtgcatcagttttaggattggcagccttatttggaatatttttcttagtaaagaagcgaagaacaatggcacaacaaagaaaagaactgtatgacctggttggacggcctgatgtctttagtagcgccgaactcaagctagctacaaataatttcagttcacaaaacattcttggagaaggcggatatgggccagtgtataagggtaagctacctgatggaaaagttgttgctgtcaaacaactttcagaatcatctcatcaagggaaaagccagtttgtgacagaggttgctacaatttctgctgtgcaacatcgtaatcttgtgaaattgcacggctgctgcattgatagtaaatcacccttgctggtttatgagtaccttgaaaatggaagcctagatcaagcacttttcagtgagttcacctgcaaattggcagcacctctaattgtaacttgtctgtcattttcaagtggctatctggcacccgagtatgcaatgagaggtcgtttgactgaaaaggctgatgtttttgcattcggggtggtcgcgctcgagactgttgctggtcggtcaaacatcgacaactcccttgaggaaagcaaggttaatctctttggatgggcatggagcctgtatgaaaaggagcaagctctagaaatcgttgacccaagaatcaaagagttcagcagggatgaagccttgagagtcatccatgttgcactcatgtgcacccagggctcaccgcaccagcgacccccgatgtcaaaggtcgtggccatgctcaccggagacgttgaggtggctgaggtgatcatgaagccgagctacatcacggagtggctgcacagggaaggggacagcagctacttcacaaactacgcaggatctgccacccccgagttcagtgggcacaaagagagtgaactttcgtttatcagttag
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| Protein seq | MRRCSCWQLLWLVLVCSWRIAAAQAQAAPRTDPTEAAALNTILGRWGKKASSEWNISGELCSGLASDKTNWDDYPNINPFIKNLAYNYLSGVVPSFIGKNLAFNPLSGQLPKEIGNLTNLLMLGVSFNNFTGELPEELGNLVKLEQLYIDSSGFSGPFPLTFSKLQRLKILRAQDNDFTGKIPDNFGSMSSLEDMRIGDIVNGSSSLAFISNLTSLSNIDFSYNQLSGRFPSWVNQNNLQLNLVANNFVLVGTNSSILPSGLGCLQQDTPCFRGSPEYYSFAVDCGSNSSTNPTSLGTAAYYVTSQTRWGVSSVGNFFQGTNGMDRIYSSSKHFQNTVDSKLFETARMSPSSLRYYGLGLENGNYTVLLQFAEFSFTETPTWQSLGRRVFDIYVQGALKEKNFDIRKTAGGKSFTAVNRSYTATVSKNFIEIHLFWAGKGTCCVPTQGHYGPTISALSITPNFTPTVRNGVPKKRSKAGAIVGIVIGASVLGLAALFGIFFLVKKRRTMAQQRKELYDLVGRPDVFSSAELKLATNNFSSQNILGEGGYGPVYKGKLPDGKVVAVKQLSESSHQGKSQFVTEVATISAVQHRNLVKLHGCCIDSKSPLLVYEYLENGSLDQALFSEFTCKLAAPLIVTCLSFSSGYLAPEYAMRGRLTEKADVFAFGVVALETVAGRSNIDNSLEESKVNLFGWAWSLYEKEQALEIVDPRIKEFSRDEALRVIHVALMCTQGSPHQRPPMSKVVAMLTGDVEVAEVIMKPSYITEWLHREGDSSYFTNYAGSATPEFSGHKESELSFIS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56130 [UniProtKB/Swiss-Prot:C0LGH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0009230 | OsLima_05g0009230.02 | Chr05 | 9644486 | 9653728 | + | NAM | ||
| CDS seq | atgcggcgttgcagttgctggcagctattgtggctggtgcttgtgtgctcatggcggatcgctgcagctcaggctcaggcggcaccaagaaccgatccaaccgaagcggcagctctgaacacaatcctgggaagatggggcaagaaagCATcatcagagtggaacatcagtggcgagctttgtagtggcctggcttccgacaagaccaactgggatgactaccccaacatcaacccatttatcaagaacctggcttataattacttgagtggtgtggtgccatccttcattggaaagaacttggctttcaatccattatccgggcaacttccgaaggaaattgggaatctcacaaatcttctcatgttgggagttagctttaacaattttacgggtgaacttcctgaagaactgggaaatttggtgaaacttgagcagttgagggcacaagataatgatttcacaggcaaaatacctgataattttggcagcatgagtagtttggaagatatgcgaattggtgatatcgtaaatgggagctcttcactggcttttataagcaatctcacctctttgagcaacatagatttttcctacaaccagctcagtggaagatttccttcttgggtcaaccagaacaatttgcaattgaatttggtggcaaacaactttgttcttgtgggcactaacagcagtattctaccttcaggtctaggctgcctccaacaagacactccttgtttccgaggatctccagaatattactccttcgcagttgactgcggcagtaatagttctacgaatcccacgagccttggcactgcagcatattatgtcaccagtcagacaagatGgggtgtcagtagtgttgggaacttcttccagggcacAaatggaatggatagaatatatagctcctccaagcattttcagaatactgttgattcaaaactgtttgagactgctaggatgtcaccttcatcactgaggtactatggtcttggacttgagaacggaaactacacagttctgcttcaatttgcagagttctcttttacggaaacaccgacttggcaaagcttaggaaggagagtttttgacatatatgttcagggtgcactgaaagaaaagaatttcgatataaggaagacagcaggtggaaaatcttttactgcagttaacaggagctacacagcaactgtgtcgaaaaacttcattgagatccatctcttttgggctggcaaaggcacttgttgtgtacctactcaaggtcactacggaccgacgatctcagcattaagcatcactccaaattttactcccactgtacggaatggggtaccaaaaaagagaagtaaagcaggtgcaattgttggaatagtgattggtgcatcagttttaggattggcagccttatttggaatatttttcttagtaaagaagcgaagaacaatggcacaacaaagaaaagaactgtatgacctggttggacggcctgatgtctttagtagcgccgaactcaagctagctacaaataatttcagttcacaaaacattcttggagaaggcggatatgggccagtgtataagggtaagctacctgatggaaaagttgttgctgtcaaacaactttcagaatcatctcatcaagggaaaagccagtttgtgacagaggttgctacaatttctgctgtgcaacatcgtaatcttgtgaaattgcacggctgctgcattgatagtaaatcacccttgctggtttatgagtaccttgaaaatggaagcctagatcaagcacttttcagtgagttcacctgcaaattggcagcacctctaattgtaacttgtctgtcattttcaagtggctatctggcacccgagtatgcaatgagaggtcgtttgactgaaaaggctgatgtttttgcattcggggtggtcgcgctcgagactgttgctggtcggtcaaacatcgacaactcccttgaggaaagcaaggttaatctctttggatgggcatggagcctgtatgaaaaggagcaagctctagaaatcgttgacccaagaatcaaagagttcagcagggatgaagccttgagagtcatccatgttgcactcatgtgcacccagggctcaccgcaccagcgacccccgatgtcaaaggtcgtggccatgctcaccggagacgttgaggtggctgaggtgatcatgaagccgagctacatcacggagtggctgcacagggaaggggacagcagctacttcacaaactacgcaggatctgccacccccgagttcagtgggcacaaagagagtgaactttcgtttatcagttag
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| Protein seq | MRRCSCWQLLWLVLVCSWRIAAAQAQAAPRTDPTEAAALNTILGRWGKKASSEWNISGELCSGLASDKTNWDDYPNINPFIKNLAYNYLSGVVPSFIGKNLAFNPLSGQLPKEIGNLTNLLMLGVSFNNFTGELPEELGNLVKLEQLRAQDNDFTGKIPDNFGSMSSLEDMRIGDIVNGSSSLAFISNLTSLSNIDFSYNQLSGRFPSWVNQNNLQLNLVANNFVLVGTNSSILPSGLGCLQQDTPCFRGSPEYYSFAVDCGSNSSTNPTSLGTAAYYVTSQTRWGVSSVGNFFQGTNGMDRIYSSSKHFQNTVDSKLFETARMSPSSLRYYGLGLENGNYTVLLQFAEFSFTETPTWQSLGRRVFDIYVQGALKEKNFDIRKTAGGKSFTAVNRSYTATVSKNFIEIHLFWAGKGTCCVPTQGHYGPTISALSITPNFTPTVRNGVPKKRSKAGAIVGIVIGASVLGLAALFGIFFLVKKRRTMAQQRKELYDLVGRPDVFSSAELKLATNNFSSQNILGEGGYGPVYKGKLPDGKVVAVKQLSESSHQGKSQFVTEVATISAVQHRNLVKLHGCCIDSKSPLLVYEYLENGSLDQALFSEFTCKLAAPLIVTCLSFSSGYLAPEYAMRGRLTEKADVFAFGVVALETVAGRSNIDNSLEESKVNLFGWAWSLYEKEQALEIVDPRIKEFSRDEALRVIHVALMCTQGSPHQRPPMSKVVAMLTGDVEVAEVIMKPSYITEWLHREGDSSYFTNYAGSATPEFSGHKESELSFIS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0009230 | OsLima_05g0009230.01 | Chr05 | 9644486 | 9653728 | + | NAM | ||
| CDS seq | atgcggcgttgcagttgctggcagctattgtggctggtgcttgtgtgctcatggcggatcgctgcagctcaggctcaggcggcaccaagaaccgatccaaccgaagcggcagctctgaacacaatcctgggaagatggggcaagaaagCATcatcagagtggaacatcagtggcgagctttgtagtggcctggcttccgacaagaccaactgggatgactaccccaacatcaacccatttatcaagaacctggcttataattacttgagtggtgtggtgccatccttcattggaaagaacttggctttcaatccattatccgggcaacttccgaaggaaattgggaatctcacaaatcttctcatgttgggagttagctttaacaattttacgggtgaacttcctgaagaactgggaaatttggtgaaacttgagcagttgtacattgatagttctggattcagcggtccattccctttgacgttttcaaagcttcagaggctgaagatcttgagggcacaagataatgatttcacaggcaaaatacctgataattttggcagcatgagtagtttggaagatatgcgaattggtgatatcgtaaatgggagctcttcactggcttttataagcaatctcacctctttgagcaacatagatttttcctacaaccagctcagtggaagatttccttcttgggtcaaccagaacaatttgcaattgaatttggtggcaaacaactttgttcttgtgggcactaacagcagtattctaccttcaggtctaggctgcctccaacaagacactccttgtttccgaggatctccagaatattactccttcgcagttgactgcggcagtaatagttctacgaatcccacgagccttggcactgcagcatattatgtcaccagtcagacaagatGgggtgtcagtagtgttgggaacttcttccagggcacAaatggaatggatagaatatatagctcctccaagcattttcagaatactgttgattcaaaactgtttgagactgctaggatgtcaccttcatcactgaggtactatggtcttggacttgagaacggaaactacacagttctgcttcaatttgcagagttctcttttacggaaacaccgacttggcaaagcttaggaaggagagtttttgacatatatgttcagggtgcactgaaagaaaagaatttcgatataaggaagacagcaggtggaaaatcttttactgcagttaacaggagctacacagcaactgtgtcgaaaaacttcattgagatccatctcttttgggctggcaaaggcacttgttgtgtacctactcaaggtcactacggaccgacgatctcagcattaagcatcactccaaattttactcccactgtacggaatggggtaccaaaaaagagaagtaaagcaggtgcaattgttggaatagtgattggtgcatcagttttaggattggcagccttatttggaatatttttcttagtaaagaagcgaagaacaatggcacaacaaagaaaagaactgtatgacctggttggacggcctgatgtctttagtagcgccgaactcaagctagctacaaataatttcagttcacaaaacattcttggagaaggcggatatgggccagtgtataagggtaagctacctgatggaaaagttgttgctgtcaaacaactttcagaatcatctcatcaagggaaaagccagtttgtgacagaggttgctacaatttctgctgtgcaacatcgtaatcttgtgaaattgcacggctgctgcattgatagtaaatcacccttgctggtttatgagtaccttgaaaatggaagcctagatcaagcacttttcagtgagttcacctgcaaattggcagcacctctaattgtaacttgtctgtcattttcaagtggctatctggcacccgagtatgcaatgagaggtcgtttgactgaaaaggctgatgtttttgcattcggggtggtcgcgctcgagactgttgctggtcggtcaaacatcgacaactcccttgaggaaagcaaggttaatctctttggatgggcatggagcctgtatgaaaaggagcaagctctagaaatcgttgacccaagaatcaaagagttcagcagggatgaagccttgagagtcatccatgttgcactcatgtgcacccagggctcaccgcaccagcgacccccgatgtcaaaggtcgtggccatgctcaccggagacgttgaggtggctgaggtgatcatgaagccgagctacatcacggagtggctgcacagggaaggggacagcagctacttcacaaactacgcaggatctgccacccccgagttcagtgggcacaaagagagtgaactttcgtttatcagttag
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| Protein seq | MRRCSCWQLLWLVLVCSWRIAAAQAQAAPRTDPTEAAALNTILGRWGKKASSEWNISGELCSGLASDKTNWDDYPNINPFIKNLAYNYLSGVVPSFIGKNLAFNPLSGQLPKEIGNLTNLLMLGVSFNNFTGELPEELGNLVKLEQLYIDSSGFSGPFPLTFSKLQRLKILRAQDNDFTGKIPDNFGSMSSLEDMRIGDIVNGSSSLAFISNLTSLSNIDFSYNQLSGRFPSWVNQNNLQLNLVANNFVLVGTNSSILPSGLGCLQQDTPCFRGSPEYYSFAVDCGSNSSTNPTSLGTAAYYVTSQTRWGVSSVGNFFQGTNGMDRIYSSSKHFQNTVDSKLFETARMSPSSLRYYGLGLENGNYTVLLQFAEFSFTETPTWQSLGRRVFDIYVQGALKEKNFDIRKTAGGKSFTAVNRSYTATVSKNFIEIHLFWAGKGTCCVPTQGHYGPTISALSITPNFTPTVRNGVPKKRSKAGAIVGIVIGASVLGLAALFGIFFLVKKRRTMAQQRKELYDLVGRPDVFSSAELKLATNNFSSQNILGEGGYGPVYKGKLPDGKVVAVKQLSESSHQGKSQFVTEVATISAVQHRNLVKLHGCCIDSKSPLLVYEYLENGSLDQALFSEFTCKLAAPLIVTCLSFSSGYLAPEYAMRGRLTEKADVFAFGVVALETVAGRSNIDNSLEESKVNLFGWAWSLYEKEQALEIVDPRIKEFSRDEALRVIHVALMCTQGSPHQRPPMSKVVAMLTGDVEVAEVIMKPSYITEWLHREGDSSYFTNYAGSATPEFSGHKESELSFIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 9649443 | 9649703 | + | OsLima_05g0009230.01 | OsLima_05g0009230.02,OsLima_05g0009230.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.100458 | 0.061312 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0263100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g16824 | RBH | 1.396188 | 1.701065 | 1.434122 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0263100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0009300 | RBH | 0.533252 | 1.902297 | 8.296708 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0009340 | RBH | 0.389677 | 2.323842 | 4.393435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0009230 | RBH | 0.545312 | 5.362394 | 14.273438 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0009330 | RBH | 0.078582 | 0.034321 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0009390 | RBH | 3.997890 | 1.498049 | 25.130625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0143100 | RBH | 4.8085535 | 8.330694 | 30.6009175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0009260 | RBH | 0.287073 | 0.088923 | 1.570310 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0140400 | SBH | 0.9392435 | 6.2197055 | 0.004043 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0009180 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0009280 | RBH | 4.915528 | 1.104680 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0009330 | RBH | 1.048392 | 0.712670 | 2.737355 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0009300 | RBH | 0.135714 | 2.025840 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009100 | RBH | 0.107939 | 0.0 | 2.930727 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0009390 | RBH | 2.168992 | 2.735105 | 16.753857 |
