Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0008810 | OGI:05024120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:9030046-9037232 | ||||||||
| Gene Symbol | CSB | ||||||||||
| DNA seq | agatgcataatcaagggatgtattaacagcctgcactctctgttacaacattgccacaacgccagaccttggtgtgccgctggcgatcagctacaatattatgtctcgggaaaagtcggataacgggtgaattatttgcatgcatgatacatgacctgctatgctcgtatcatttgtacattgtaaccactaaccagcacagcttctttctgtttgagatgcactcagaactccgtggtaactctaaaagctttactcagccgaccaacaaagatacaagcgcccaaatccagagaaccagcaggagaaacagcgatttatgtcaaacccaaaagacaaaccactatgggtctgatcttaccttacaaatgcaataaatgaagaaaaagaaaagaaggaaataagatgatctgaacatgaaatgttcctccccttctgatagcctgtgccaagccagagaaagagtggatggggcagaacaggagaatagaaggaaaacatcggtggagcaggaaagggctatctatatgagggaagcattatccatactccctatggcttactttgcattcctgtagcggtccaatacttcatgtcgttgcaaaggcgagacagacagcaaccacttactaaactcaaggtcgttcatacccatgaaagatgcaattcggctgaattccttctttttctgcaccagtgagtaagattttgccttaattgtatgcattgtttcattcttcttactttgcagctcctctaagtgccttgggacagttttatcttctgcacagttgcttgcttcatttgtcctcgtgtttacaacatcttcatttcggtgagcataaactattcctgtttgtagggaacagaatttgttacaagaaaaaatcaatgcaccaatacgtagacaGaggggagatattctggtagacaacttagcaagcaactttcgggtttcaatcttagtcaatatgagttttttgcaattgacaaatcagtttttactggaaacagtaaacgtagcaactaataacagaatcctacatagatcaagatgtcaaagacttgcatacttgaccaagtgtttatttattttagactaaatttcaaattgctactgttttgtcagaactatccgtttgctgtaaatttaactgaacatttcagaaatatgcaataataattgattgttttattttttttttcatagaactgaaactttattcttattataggtcaggCccccctgtcaatacacatcctaaagttagagaactgatagtttcatgtgaacccttttacccccacactttttttccttaagaaagtagagttggtggtggtGgggggggggaatgattttcaatattcttgtaagatgagattgatacaaatataattactaatttcctctaTtttattcagaacgtaagttattctatattgcatttcacagaccagatatttttctgttcataggattatagatatataatgttgcaaaaccatatcaatctacaaatgttagtgtcatttgagctctatgggatatgggacataaacttttcttcaaaatgtatgaAGagaacttagggcagacagtgaacataaactagaataggatgaacagcagggctaaataaatcgatacaaacatatgaatgttacaaaaattgaatgcacaacaatgcaaaatatttagagtcagtatttgaaattaaaatttaatctaacaattaactattcagccactagtatattattcAgtttcccataatagtaatagtaatagtatattattggtcattttgaaattgaaacttttcataaagcatttaaggtccaaaatcaagaaaattaaattagaaatattcagactgacagtagaacttaccacaatggtacaaattcttgttctcgttatgtattgctgtcattgaggatttcatttgatcttgcgtaccaaatatatttgtatcaactatttctcgaattcctattgtttcagctgtattacccttcccatgttctccatgcatttcaatgatctcactggtgaaaagcttatcagacaagtcgcgaaacagattgcatatcccaaagagctcaccttgaaattttttgtcatcctaaaatcatataattatacaatttatataaacaaagcaccaaagccaagtgtgattattcttaaaacgtgaaaggtatatgtgctggtaaatgactaagaaacttcaagagagtgacgcataacttcatgacttctgaactgtcgaaatgtaatctagtgaattgatagatgccttattctaaaaaaaagtattcatgttaacacagaatttggaaagtcatgaggtaaggtgagaaaactatctagttaaaaaaggcagcattgccctagatttaatacatgtagtgacacatcattttactattcaggtgccataggacactgcaacagaaaataatgaatctaccttaagtgctgtatgtgtattatgagtgcaaccattctcttatgcctatgactgctaagctaggaaccaaaataggaagtacattaacatatggtgatgtatgcaacaatgtaggaatagtgcaaggcagttcatgtgtcacgtgtttgattctgctaaattgctactcttaacaacaaatattaatatcagtatcatgtggattacacaatgtctacgcttgtttgttaacaatacatcatccaggtagtttgcatcaacttacaaactctaaattctctggtgagtataTTaaactgcataatcaaatggtcgaaatacaataattttctgaataaaatatgaatgttatgattgtaataatcagtccaaatacaagcacgggagaaacacgtattttgggaaatggaaaaaatataaggacctaaatgactaggtaattcagggaaatgattttagaacaggaaaagggaatcatattaggatggtccacaattgtaccacccttcaagtaattgaaacaatcaatccaatttcatcaaaatgcattagttttacaacattacctgcactccttcaaagtaacgtttttctatttttccagagaccgcaatattggaaagctgttgcttatatatttgtcgagaataaataagctcttcaagggaaccagcaccaagtaggcgaaatacagtgacatgccgcctctgtccaaatcgaaatgacctgtcttgcgcttgcaagtcttgcgcagggttccaacttgggtcaaaaatcaccacacgattagcactgaccaggttgacacctaaatttcctgcccgtgtagatataaggaaaacctgtagAaaagcaattcaccatttgacgatgctaatctaaaaagttcttttggcagcgagtactgaaatgcacatcaacaggaagttacctgtttgcttgggcatctattgaactcatcaattagtaattggcgtgcattcatgggagtcgttccatcaaagcgagaaaagcagtaacccttccgtataagaaatttctctagtatgtcaagcatcctggttgtcaatttatgcatgaacaagtgattacacatgcagaagatataacatcaagcagcatatctAaatcgcaagtactgtcaagaaacgttccaagaagcaaacgcagtgaacaagaactaagatagatgcttaagagaaaaataagctattcgatacaagcaagttttgttttaacttactttcaggtctaaataaataggtttagtttgtgttcagtgtaacctgtctaatcacattccctaaaagtgtatttaaagaaaggcaagtagaaggaagtttacatctattcaatgatttaacgctctatactgtcaaaggtatataaaccacaacttcagcaaaaactggagcatgatgggcttgtgagaaattatacccactacAGTAagtaatgatattttatgaacatttagtaacaatcaattccaaggtcttacatcaataagagctttttgttcaacatcaaatatggtttaaaacaaagaaattttctgacttgtgagatatgttattcttgctttaatcttcatgcttactgaagcattggacacattggggataaccactcacctgactgaatagctgaaAAGaagaattttgtcaccctgcagagtccataatgacaatagtctttccaacgcacgcatctttccacaatgttctgcatcactgagacccatgaagttttcacttttagcacctccaccaactaattcaatatctgtgtcaaagacagcagctgcaagctcagcatctttcttctgcttctcaatttcgtctttcaggtttggctttatcagctccagatggttactgatctatggaaaattagtggggaattattaaaaaaacataaatctttccaaaatattttaagaatatgaaataacctgctgaagcttcccaaggcaaggaagaacaagacagaaGGggcacagagaacaaccctctggattgtctctgtgaagataagaccagataatgccatgtggttcagttctcttgcagcaTtccacctgagtcaaaggacttccacagctacatgggagatccttgtttataaggatttgcacgtcaggctgttgcagcattcttctgtaaacgcgcttttgaacgtcactcattctgcagaaaacaatattatcctcctttccaagcatgagatgcccaatggtctcttcctttgttcttctcaacagaaatttgctaagaactgaaacaaggtgcttcttgcgcttatcagcaacttgtacaaatctctcaggagcactgaacctctggccatgttttaaaggctcgtcataatatactcgaaagtgttctcgatcccccaagcaaccaggtacaatccagtcaaacagattaaataattccattattttattttgcattatggttcctgtgagaccaaaccgctttcgagtagtaatttccaagcaagctgtatataactttgatttttcattcttcagccggtgtgcctcatcaacaaccacaaggtcccacgagatgccacacaaaatcttgccatgaatcctaaaagtgtcaaaactggtaataactatctctagtctttgagtttcaaccttttgaagaaccaggtcacgatttgggccatgatagacagcaacagaacatcttgcccactctgcaaattcattttcccagtttcgaattactgatgtggggcagaggatgagtataggggcaatctttcttccttccactaattgatcaccgtggtcattatcttttccaataacagctgataagaaagcaattgtttggatagtctttcccaaacccctaaatcagaaaaaaaaacatgagaaacaagggagtcagaactcagaagtccatcaaatttaaatgttgtgttgaaaaatctcattattatgttttcggtttgagatttaataataggtgagtagaaaaaagctccccaaaaataaaatgctcaagcttgctatcgaccctgagattttttttcccaacagacctacagggtatgcttatgtgatgccggtgcaagtacctgtcaatcatccacatgcttacccatcatgcagaatatgagcaaactatgtatataaattgatgataagaacagaataagaccacgaagtaaaccgccaacggattaaagctacatacagtgggaatggtttagttattaatttttcacaaaataatataaaccatgcaaactatgtgcatggttattacatagaagtttaggaacatcaggacatatgcaatacatgtattatcttttaaagactataattttaagatacttttcaaactaactacaatttccctgtcacagttttgtaaaactttaaataaacttaaaaaaaaactagttatcatgtcggagtttagactttaataaagcaatagtaataagtcacttacaaaaTCtttttaagaaaaaaatcccttgtatgatataatctcctggttgtgagtaatattaccaagtttcattgaatttgacgatttaagcccacaaacctatcaaccacaatgttttcacatggatagaaagagatatgtattgttttggatattgtatagtttcatttcagttcagccacaatcaggagattatatcatacaagagtacaagttatttagcagtgtacttatactgtaacaaaataacttccaaacctcacatgtcatctccaagcacaccgccatggttgtttctatacagattgtataagaatcttacaccatccctctgatgcacaagtagcctgcaatttatcgaggagggtacctgtaccaaacaaaacagaggaaagcacagcaaagtgaatgtgcttgtaataactaaaaaattgctctaactaaaaataaaagagaggctaaagtgagtaaaattctgttgaaggagggactaaagtgaacagagggaagggatattaggagggaaagggaagccacatctgttatatggtagttaaagggatattaggatatgattgatttgtattatgtcttccttatctcttgtactatacacacctgccccagccctgaggctcaatataatcatcaggttatgctgtaatctctcctcctattattcaacatgctatcaatcacccaaaaaaaaaaagccatggcaggtgcaaaacattggtcagaacctatcacggtgcgagaacctgaccagtcgccactcgccaagaactgtggaccggaacatcgaacagtagtagccaagagggaggcggcagcatagattttacctggacgacggggcgctctccgggcggcgagagagcaagcggttcgtagggcccgcgggagtcgagggaggccgctggcggaagggaagcgcgggggcggatgcaggggacctcgtcctcctcctctggcagcggcggcgcatcatccgccgccgcatccgaggtcggggaagtgcgagggggcggtggcggcgagacggaaaaggaggaagaggaggaggaggcatcaaggcggaggagctgctgcgagagggacgtttttgggggcctcctggcgaggagaggaggaggtgatcggggttgggactcggattggggctgtgaaaaggaggaagactggagggtttctttgaggctgtggagcgacatggcgttgcttggca
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| CDS seq | atgtcgctccacagcctcaaagaaaccctccagtcttcctccttttcacagccccaatccgagtcccaaccccgatcacctcctcctctcctcgccaggaggcccccaaaaacgtccctctcgcagcagctcctccgccttgatgcctcctcctcctcttcctccttttccgtctcgccgccaccgccccctcgcacttccccgacctcggatgcggcggcggatgatgcgccgccgctgccagaggaggaggacgaggtcccctgcatccgcccccgcgcttcccttccgccagcggcctccctcgactcccgcgggccctacgaaccgcttgctctctcgccgcccggagagcgccccgtcgtccaggtaccctcctcgataaattgcaggctacttgtgcatcagagggatggtgtaagattcttatacaatctgtatagaaacaaccatggcggtgtgcttggagatgacatgggtttgggaaagactatccaaacaattgctttcttatcagctgttattggaaaagataatgaccacggtgatcaattagtggaaggaagaaagattgcccctatactcatcctctgccccacatcagtaattcgaaactgggaaaatgaatttgcagagtgggcaagatgttctgttgctgtctatcatggcccaaatcgtgacctggttcttcaaaaggttgaaactcaaagactagagatagttattaccagttttgacacttttaggattcatggcaagattttgtgtggcatctcgtgggaccttgtggttgttgatgaggcacaccggctgaagaatgaaaaatcaaagttatatacagcttgcttggaaattactactcgaaagcggtttggtctcacaggaaccataatgcaaaataaaataatggaattatttaatctgtttgactggattgtacctggttgcttgggggatcgagaacactttcgagtatattatgacgagcctttaaaacatggccagaggttcagtgctcctgagagatttgtacaagttgctgataagcgcaagaagcaccttgtttcagttcttagcaaatttctgttgagaagaacaaaggaagagaccattgggcatctcatgcttggaaaggaggataatattgttttctgcagaatgagtgacgttcaaaagcgcgtttacagaagaatgctgcaacagcctgacgtgcaaatccttataaacaaggatctcccatgtagctgtggaagtcctttgactcaggtggaAtgctgcaagagaactgaaccacatggcattatctggtcttatcttcacagagacaatccagagggttgttctctgtgccCCttctgtcttgttcttccttgccttgggaagcttcagcagatcagtaaccatctggagctgataaagccaaacctgaaagacgaaattgagaagcagaagaaagatgctgagcttgcagctgctgtctttgacacagatattgaattagttggtggaggtgctaaaagtgaaaacttcatgggtctcagtgatgcagaacattgtggaaagatgcgtgcgttggaaagactattgtcattatggactctgcagggtgacaaaattcttCTTttcagctattcagtcaggatgcttgacatactagagaaatttcttatacggaagggttactgcttttctcgctttgatggaacgactcccatgaatgcacgccaattactaattgatgagttcaatagatgcccaagcaaacaggttttccttatatctacacgggcaggaaatttaggtgtcaacctggtcagtgctaatcgtgtggtgatttttgacccaagttggaaccctgcgcaagacttgcaagcgcaagacaggtcatttcgatttggacagaggcggcatgtcactgtatttcgcctacttggtgctggttcccttgaagagcttatttattctcgacaaatatataagcaacagctttccaatattgcggtctctggaaaaatagaaaaacgttactttgaaggagtgcaggatgacaaaaaatttcaaggtgagctctttgggatatgcaatctgtttcgcgacttgtctgataagcttttcaccagtgagatcattgaaatgcatggagaacatgggaagggtaatacagctgaaacaataggaattcgagaaatagttgatacaaatatatttggtacgcaagatcaaatgaaatcctcaatgacagcaatacataacgagaacaagaatttgtaccattgtggaatagtttatgctcaccgaaatgaagatgttgtaaacacgaggacaaatgaagcaagcaactgtgcagaagataaaactgtcccaaggcacttagaggagctgcaaagtaagaagaatgaaacaatgcatacaattaaggcaaaatcttactcactggtgcagaaaaagaaggaattcagccgaattgcatctttcatgggtatgaacgaccttgagtttagtaagtggttgctgtctgtctcgcctttgcaacgacatgaagtattggaccgctacaggaatgcaaagtaa
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| Protein seq | MSLHSLKETLQSSSFSQPQSESQPRSPPPLLARRPPKTSLSQQLLRLDASSSSSSFSVSPPPPPRTSPTSDAAADDAPPLPEEEDEVPCIRPRASLPPAASLDSRGPYEPLALSPPGERPVVQVPSSINCRLLVHQRDGVRFLYNLYRNNHGGVLGDDMGLGKTIQTIAFLSAVIGKDNDHGDQLVEGRKIAPILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDLVLQKVETQRLEIVITSFDTFRIHGKILCGISWDLVVVDEAHRLKNEKSKLYTACLEITTRKRFGLTGTIMQNKIMELFNLFDWIVPGCLGDREHFRVYYDEPLKHGQRFSAPERFVQVADKRKKHLVSVLSKFLLRRTKEETIGHLMLGKEDNIVFCRMSDVQKRVYRRMLQQPDVQILINKDLPCSCGSPLTQVECCKRTEPHGIIWSYLHRDNPEGCSLCPFCLVLPCLGKLQQISNHLELIKPNLKDEIEKQKKDAELAAAVFDTDIELVGGGAKSENFMGLSDAEHCGKMRALERLLSLWTLQGDKILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQVFLISTRAGNLGVNLVSANRVVIFDPSWNPAQDLQAQDRSFRFGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSGKIEKRYFEGVQDDKKFQGELFGICNLFRDLSDKLFTSEIIEMHGEHGKGNTAETIGIREIVDTNIFGTQDQMKSSMTAIHNENKNLYHCGIVYAHRNEDVVNTRTNEASNCAEDKTVPRHLEELQSKKNETMHTIKAKSYSLVQKKKEFSRIASFMGMNDLEFSKWLLSVSPLQRHEVLDRYRNAK |
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| Function | Switch 2 [UniProtKB/Swiss-Prot:F4I2H2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0008810 | OsLima_05g0008810.01 | Chr05 | 9030046 | 9037232 | - | NAM | ||
| CDS seq | atgtcgctccacagcctcaaagaaaccctccagtcttcctccttttcacagccccaatccgagtcccaaccccgatcacctcctcctctcctcgccaggaggcccccaaaaacgtccctctcgcagcagctcctccgccttgatgcctcctcctcctcttcctccttttccgtctcgccgccaccgccccctcgcacttccccgacctcggatgcggcggcggatgatgcgccgccgctgccagaggaggaggacgaggtcccctgcatccgcccccgcgcttcccttccgccagcggcctccctcgactcccgcgggccctacgaaccgcttgctctctcgccgcccggagagcgccccgtcgtccaggtaccctcctcgataaattgcaggctacttgtgcatcagagggatggtgtaagattcttatacaatctgtatagaaacaaccatggcggtgtgcttggagatgacatgggtttgggaaagactatccaaacaattgctttcttatcagctgttattggaaaagataatgaccacggtgatcaattagtggaaggaagaaagattgcccctatactcatcctctgccccacatcagtaattcgaaactgggaaaatgaatttgcagagtgggcaagatgttctgttgctgtctatcatggcccaaatcgtgacctggttcttcaaaaggttgaaactcaaagactagagatagttattaccagttttgacacttttaggattcatggcaagattttgtgtggcatctcgtgggaccttgtggttgttgatgaggcacaccggctgaagaatgaaaaatcaaagttatatacagcttgcttggaaattactactcgaaagcggtttggtctcacaggaaccataatgcaaaataaaataatggaattatttaatctgtttgactggattgtacctggttgcttgggggatcgagaacactttcgagtatattatgacgagcctttaaaacatggccagaggttcagtgctcctgagagatttgtacaagttgctgataagcgcaagaagcaccttgtttcagttcttagcaaatttctgttgagaagaacaaaggaagagaccattgggcatctcatgcttggaaaggaggataatattgttttctgcagaatgagtgacgttcaaaagcgcgtttacagaagaatgctgcaacagcctgacgtgcaaatccttataaacaaggatctcccatgtagctgtggaagtcctttgactcaggtggaAtgctgcaagagaactgaaccacatggcattatctggtcttatcttcacagagacaatccagagggttgttctctgtgccCCttctgtcttgttcttccttgccttgggaagcttcagcagatcagtaaccatctggagctgataaagccaaacctgaaagacgaaattgagaagcagaagaaagatgctgagcttgcagctgctgtctttgacacagatattgaattagttggtggaggtgctaaaagtgaaaacttcatgggtctcagtgatgcagaacattgtggaaagatgcgtgcgttggaaagactattgtcattatggactctgcagggtgacaaaattcttCTTttcagctattcagtcaggatgcttgacatactagagaaatttcttatacggaagggttactgcttttctcgctttgatggaacgactcccatgaatgcacgccaattactaattgatgagttcaatagatgcccaagcaaacaggttttccttatatctacacgggcaggaaatttaggtgtcaacctggtcagtgctaatcgtgtggtgatttttgacccaagttggaaccctgcgcaagacttgcaagcgcaagacaggtcatttcgatttggacagaggcggcatgtcactgtatttcgcctacttggtgctggttcccttgaagagcttatttattctcgacaaatatataagcaacagctttccaatattgcggtctctggaaaaatagaaaaacgttactttgaaggagtgcaggatgacaaaaaatttcaaggtgagctctttgggatatgcaatctgtttcgcgacttgtctgataagcttttcaccagtgagatcattgaaatgcatggagaacatgggaagggtaatacagctgaaacaataggaattcgagaaatagttgatacaaatatatttggtacgcaagatcaaatgaaatcctcaatgacagcaatacataacgagaacaagaatttgtaccattgtggaatagtttatgctcaccgaaatgaagatgttgtaaacacgaggacaaatgaagcaagcaactgtgcagaagataaaactgtcccaaggcacttagaggagctgcaaagtaagaagaatgaaacaatgcatacaattaaggcaaaatcttactcactggtgcagaaaaagaaggaattcagccgaattgcatctttcatgggtatgaacgaccttgagtttagtaagtggttgctgtctgtctcgcctttgcaacgacatgaagtattggaccgctacaggaatgcaaagtaa
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| Protein seq | MSLHSLKETLQSSSFSQPQSESQPRSPPPLLARRPPKTSLSQQLLRLDASSSSSSFSVSPPPPPRTSPTSDAAADDAPPLPEEEDEVPCIRPRASLPPAASLDSRGPYEPLALSPPGERPVVQVPSSINCRLLVHQRDGVRFLYNLYRNNHGGVLGDDMGLGKTIQTIAFLSAVIGKDNDHGDQLVEGRKIAPILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDLVLQKVETQRLEIVITSFDTFRIHGKILCGISWDLVVVDEAHRLKNEKSKLYTACLEITTRKRFGLTGTIMQNKIMELFNLFDWIVPGCLGDREHFRVYYDEPLKHGQRFSAPERFVQVADKRKKHLVSVLSKFLLRRTKEETIGHLMLGKEDNIVFCRMSDVQKRVYRRMLQQPDVQILINKDLPCSCGSPLTQVECCKRTEPHGIIWSYLHRDNPEGCSLCPFCLVLPCLGKLQQISNHLELIKPNLKDEIEKQKKDAELAAAVFDTDIELVGGGAKSENFMGLSDAEHCGKMRALERLLSLWTLQGDKILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQVFLISTRAGNLGVNLVSANRVVIFDPSWNPAQDLQAQDRSFRFGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSGKIEKRYFEGVQDDKKFQGELFGICNLFRDLSDKLFTSEIIEMHGEHGKGNTAETIGIREIVDTNIFGTQDQMKSSMTAIHNENKNLYHCGIVYAHRNEDVVNTRTNEASNCAEDKTVPRHLEELQSKKNETMHTIKAKSYSLVQKKKEFSRIASFMGMNDLEFSKWLLSVSPLQRHEVLDRYRNAK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0008810 | OsLima_05g0008810.02 | Chr05 | 9030046 | 9037232 | - | NAM | ||
| CDS seq | atgcctcctcctcctcttcctccttttccgtctcgccgccaccgccccctcgcacttccccgacctcggatgcggcggcggatgatgcgccgccgctgccagaggaggaggacgaggtcccctgcatccgcccccgcgcttcccttccgccagcggcctccctcgactcccgcgggccctacgaaccgcttgctctctcgccgcccggagagcgccccgtcgtccaggggtttgggaaagactatccaaacaattgctttcttatcagctgttattggaaaagataatgaccacggtgatcaattagtggaaggaagaaagattgcccctatactcatcctctgccccacatcagtaattcgaaactgggaaaatgaatttgcagagtgggcaagatgttctgttgctgtctatcatggcccaaatcgtgacctggttcttcaaaaggttgaaactcaaagactagagatagttattaccagttttgacacttttaggattcatggcaagattttgtgtggcatctcgtgggaccttgtggttgttgatgaggcacaccggctgaagaatgaaaaatcaaagttatatacagcttgcttggaaattactactcgaaagcggtttggtctcacaggaaccataatgcaaaataaaataatggaattatttaatctgtttgactggattgtacctggttgcttgggggatcgagaacactttcgagtatattatgacgagcctttaaaacatggccagaggttcagtgctcctgagagatttgtacaagttgctgataagcgcaagaagcaccttgtttcagttcttagcaaatttctgttgagaagaacaaaggaagagaccattgggcatctcatgcttggaaaggaggataatattgttttctgcagaatgagtgacgttcaaaagcgcgtttacagaagaatgctgcaacagcctgacgtgcaaatccttataaacaaggatctcccatgtagctgtggaagtcctttgactcaggtggaAtgctgcaagagaactgaaccacatggcattatctggtcttatcttcacagagacaatccagagggttgttctctgtgccCCttctgtcttgttcttccttgccttgggaagcttcagcagatcagtaaccatctggagctgataaagccaaacctgaaagacgaaattgagaagcagaagaaagatgctgagcttgcagctgctgtctttgacacagatattgaattagttggtggaggtgctaaaagtgaaaacttcatgggtctcagtgatgcagaacattgtggaaagatgcgtgcgttggaaagactattgtcattatggactctgcagggtgacaaaattcttCTTttcagctattcagtcaggatgcttgacatactagagaaatttcttatacggaagggttactgcttttctcgctttgatggaacgactcccatgaatgcacgccaattactaattgatgagttcaatagatgcccaagcaaacaggttttccttatatctacacgggcaggaaatttaggtgtcaacctggtcagtgctaatcgtgtggtgatttttgacccaagttggaaccctgcgcaagacttgcaagcgcaagacaggtcatttcgatttggacagaggcggcatgtcactgtatttcgcctacttggtgctggttcccttgaagagcttatttattctcgacaaatatataagcaacagctttccaatattgcggtctctggaaaaatagaaaaacgttactttgaaggagtgcaggatgacaaaaaatttcaaggtgagctctttgggatatgcaatctgtttcgcgacttgtctgataagcttttcaccagtgagatcattgaaatgcatggagaacatgggaagggtaatacagctgaaacaataggaattcgagaaatagttgatacaaatatatttggtacgcaagatcaaatgaaatcctcaatgacagcaatacataacgagaacaagaatttgtaccattgtggaatagtttatgctcaccgaaatgaagatgttgtaaacacgaggacaaatgaagcaagcaactgtgcagaagataaaactgtcccaaggcacttagaggagctgcaaagtaagaagaatgaaacaatgcatacaattaaggcaaaatcttactcactggtgcagaaaaagaaggaattcagccgaattgcatctttcatgggtatgaacgaccttgagtttagtaagtggttgctgtctgtctcgcctttgcaacgacatgaagtattggaccgctacaggaatgcaaagtaa
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| Protein seq | MPPPPLPPFPSRRHRPLALPRPRMRRRMMRRRCQRRRTRSPASAPALPFRQRPPSTPAGPTNRLLSRRPESAPSSRGLGKTIQTIAFLSAVIGKDNDHGDQLVEGRKIAPILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDLVLQKVETQRLEIVITSFDTFRIHGKILCGISWDLVVVDEAHRLKNEKSKLYTACLEITTRKRFGLTGTIMQNKIMELFNLFDWIVPGCLGDREHFRVYYDEPLKHGQRFSAPERFVQVADKRKKHLVSVLSKFLLRRTKEETIGHLMLGKEDNIVFCRMSDVQKRVYRRMLQQPDVQILINKDLPCSCGSPLTQVECCKRTEPHGIIWSYLHRDNPEGCSLCPFCLVLPCLGKLQQISNHLELIKPNLKDEIEKQKKDAELAAAVFDTDIELVGGGAKSENFMGLSDAEHCGKMRALERLLSLWTLQGDKILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQVFLISTRAGNLGVNLVSANRVVIFDPSWNPAQDLQAQDRSFRFGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSGKIEKRYFEGVQDDKKFQGELFGICNLFRDLSDKLFTSEIIEMHGEHGKGNTAETIGIREIVDTNIFGTQDQMKSSMTAIHNENKNLYHCGIVYAHRNEDVVNTRTNEASNCAEDKTVPRHLEELQSKKNETMHTIKAKSYSLVQKKKEFSRIASFMGMNDLEFSKWLLSVSPLQRHEVLDRYRNAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 9035392 | 9036850 | - | OsLima_05g0008810.01 | OsLima_05g0008810.02,OsLima_05g0008810.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.210451 | 0.038648 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0247900 | RBH | 2.000866 | 1.168288 | 1.518217 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g15890 | RBH | 1.334556 | 0.944704 | 0.390074 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0247900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0008900 | RBH | 0.169190 | 6.597038 | 2.986346 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0008940 | RBH | 0.142876 | 3.855428 | 1.795994 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0008830 | RBH | 0.844622 | 1.283978 | 5.472994 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0008910 | RBH | 0.134865 | 0.144129 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0008970 | RBH | 5.593909 | 5.789779 | 11.686424 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0135600 | RBH | 2.675612 | 6.016974 | 4.1420455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0008830 | RBH | 0.196034 | 0.219582 | 0.892061 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0134500 | RBH | 4.589762 | 11.590744 | 9.4827605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008760 | RBH | 0.000000 | 6.188627 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0008860 | RBH | 3.741431 | 12.050093 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0008940 | RBH | 0.749586 | 0.608396 | 0.837356 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008870 | RBH | 0.212783 | 1.461356 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008710 | RBH | 0.124669 | 0.375774 | 1.350625 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0008980 | RBH | 1.526520 | 8.167370 | 3.814262 |
