Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0008730 | OGI:05023830 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:8952536-8960005 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcctcatcgtcgccatcgccgccgcccgccggcgagtccagccggtctcccgtctccttctcctcccaatgccaccaaccgtttcctacccccgatgcctccgccgccctcttccaccctaccggcgccatcaccatcaccatccccgcccctgaacccctctcaacccgcatccccaacccaaagaaaacctaatccagcttgcttgccggagttcggtggccgcgggagtcaccttagaaggagatgaagaagtcacttcaaaaatctctgcgtgatccgatggttaaaagtttcgaccaaggtctcccaaggtacgatttgcgatatttttaccaattccgatttctttagatatatctaagatgttgctttaccaattaccaggcatagaatatgtcgctgaaacaattttagattagaatctcgatgaactaatcccttttggaccttcaactgatgagcattttactgttaatggtagctggagccatcatgttgtctgtgataggttgttctgtaatatataatgctacggcataaacagatgttttcgatggaacatgtttgttttcttcttttatagaaatgagctttgttccttgtttaattgtttatatcctagatattattatattcttgatgtattcttcatagtttttttatgggaactatggcaagctttcactggcttgaactttattgcacaaaaatggaccacactttagaaatctagctatacataggtgcattggaggatcgtattcttcattgttactatatacactattaatcgggaacagaagaatgtaattttgaatgtttcaatgtctcagtgggaggccgcctttgtggtcaccttaagcttgttgttttgcatccatggtcaactagacaatcttggtaagccctcttctcttgtattatgtatagagttgaactgatttctcATattgatcttcatatgttgctttggcaggtttcataagcattgactgtggatatatcacgaggccaagctacccagatttcaagacaaatctaacatatgtagccgatgtggggcttcacaaatacagggtttattcacactgttgatgttggcaacctgcagagggatcttgcacaacggtacacaactgtccgctactttcccaatggaactcgcaactgctatacgctcaagcagctaacacgaggtggcaagtatcttgtgagggccacctttgggtatggcaactacgatgctttcaactcacctcctgtctttgatctctatcttggggccaactactgggtcaaggtgaacattaccaactccagcagagcatatgtccatgagacgattgcagtgtctccttctgaattcttgcaggtttgcttggtaaacactgggtcaggaactcctttcatctcagggcttgacctaaggtcactccctgcaaatttttatccggaggccaatgtggcacaatctctagttttgctcagctttttccgtgaaacggtcagttttggcttcaatcgcttccattttggaactgatgagcaccacattaggtacccagttgatcgctacgaccgcttctggcagaggtatgaagacattcctggctgggaagatgttcctgacaaaatcaatgggacagtcaagagcccccaaaacgacacctatggtgcaccttctgatcttatgcgtagtgcatctactgcggtgaatgcctcaaggatggacctgccatggagttctgatgcatccatggatgttggcatcggccccgagtacattgttgtgctatactttgccgaggtgcaggctatctcagataacttgttacggcagttccttgtttctgtggataacaccccgctggctgctgcattcagcccacggcacatgttggctgatgttttctcgggaactgtgctaggctcagaccagcatagcatctccctcattacaacaataatctctgaccttccacctttgattagtgccatggagatattcttagggcggacactgaatgagtcttccactggctcctctgatggtatgtagcatgaattataacttttacaacattttttcccttcccaatcaatcgacatgcttgttcatctgtctgtttgtctgtgtattgctaccgccatattttaatatatgatgtttaagacaagctaattaagccttttttgcctaattagcttgttctaaacatgatatattaaaataaggaggtaatatgtcattaaatcatgataaaaagtagttcactctttacctgtattttcctccgctttatacttgcttgctatatatctacagccattgccatgatgactatacagacaaagtattctgtgaagaggaactgggagggtgatccttgtgctcccgaagcttttgtatgggatggattgagctgcattcatacttccatcggagacatccaatataatcctaggggtttgcacagaataacagctttgtgagttaattctgcatgcacgatcaatatcagaacatgcacgatcaatatcacagcatgcatatatatgctgccagaagttttattgacttgcacaattgcattcaacagaaagctaagataaagaaaaaatgaaaatcacacagtgtacatttttcttttgactttaatactttgatcttaactgcaggaacttgtcattcagcgaattgattggtgatattgatgcttcctttggtcagcttttgttgctccgacacttgtacgtaatgcatactactatatatcatttcaggcatacattttccaacacttttagtgtgatcattagtagaagttgcagacatgtatgtaaacttgtaacgttgagttgagtcatcatgccaccgagactagtcattttgtatatattatggtatagttgcttcttctacatggttctgcttggtgtggatccagagaggaaaatatagtagaaaagcagataaaaggagtagcgaaaacagattgggcaagagataaggagaaatgggaagaaaatggaagagggcagagctatcgtgtgagcagacagcatgattgcagagtattagagcatagaacagaattgagaatagagggataatatagcatatcctgtccaggtccaaccgctactatgtattgtgctgtagccagacgttggagacgcttagtccaagcttagctaaagacatggcattatgcctgcatattagtacaattcaagcaatttattctcttcattgtgtttcaaataataacataacactacagcgtttttattttttggcaactcaacccatcatgctgctatgtttgcagggatctatcttacaataacctgtcaggatcaatacctgactttctgggtcaaatgccattgcttacctttctgtacgttctacgcttccatttaatctatccttttcaaaattagtgtaagctctctagcaaataatactgtatatttggatactgtaacgcacaaaactatagtattttgatatatagttctcttctgtcatagggatttatcaagcaataacctcagtggaacagttccaactagtctgcaagaaaaatctgacagtgggcagatgatactaaagtttgtacttgtttctcatatctttttgatggaggaaactcattatatttcatactatttataattttattgcattgaattgctgttatcttttatgtgtcaaacaagattgcaggcagtcttttgcaaattaccctttgcaatttggcgccctgtaattagaggctatagttggattcttgattgaaatttaatcacctaaaatctcgccaatttacctggaattatattaattgtgatctcttacatgtatgccaatcgccgttcattctgtttgctaggactggaaataaccccaacctgtgtggaaatcatacatgcgaccccatttctaacaaaaacaagaggaacaaatttataggttttgtaatagctgctgccatagtagctacggtgttcgcgctgtccctatctgcacttttcatttggtacaggagaaggaagacaaacccaggtaactgtagctaaattaccagtatattgataacatcgtagggattcatttggctaagatgcagcagcatttattctgcacactaagtgctatttaaaatggatgagtgactatgaatgcgtgaatgtttctcaaatccagatgtgcttcctgaagctgatccatacaagagtcggaggttcaagtacaaggaactccaagtcatcacgaatgactggagaaatgtaattggggagggtggatttggtcatgtctatgctggtcaattggaggatgtaactgacgttgctgtcaaggttgaatcacaaacatctttgcgagggaatcataagcagtttctggcagaggtatgtacgaagacaccaattgtagtacagtttgatgcatgcatggcctaatctatattatgtatcattggatcattagaaatagtgtaaatgtaaccatgtgtatcttgcaggttcaacacctgaccagggttcatcataagaacttggtgtccttaattggctactgtaacgacaagaaacaTCGATGCCTtgtctatgAatacatggatgggggaaccctggagggccggctcagaggtcggtagctagtcacattaaatttttacccccacaatattctctaggcagcatttcataaaccacagtactaggcttgtttgacactgctgcaatattcatatgtggcctcttctcaaccattgatcaaacaaaacatactctaattacgcacagtaggaattcacacattagtcaaaacaagatagaaagcattgtatgattagttaatggtttacttttttaattaaaaatgagtccttatgtacgtgtcatgaagcatcacaggaaaaataaatttggaactaaaaacagtttctattcaagttaaaaaaatatataaaaagaaggaagaaaacaatataaaatatagtttcagaattttcaaaaggcccatctgttcttgttcacaggtcgtgaagatccacctgaaccaccccttacctggctgcaacgcgttaacattgcactaggatctgccaacggtaccgcgcatacccagaaattttagttaatttgcatatcagttttaaatagtgcaaattttagtttactgtgcctagtatcccatgtttgaaataattatacaaacacatgcgtgcaggattaaattacctgcacacgatgtgcagtccacggttgattcacagggatgtcaaggcgggaaacatccttctgacagcaaaccttgaagcaaagatatctgactttgggttgacaaggccttccatccatgggacagtggaaacacgcactatgacccaactggctggcactccaggatacatggacccagagtatataactatctacttgttaattcctgactacctgtgttagtttagtaccattcataatattttgttcaggtcattgtcagcagtaaccatgagcgtgcattgcatatatgctttttagatcccttcaagctagtcatccaagtgagagcaacgacgtgtacagcttcggagttgttcttatggtggtcatcacagggagaacagcgatcgtcaccatcaatggcacagagaagaaccttgcacagtgtgtgcgtgactggctttcaagcggaagaggaatcgaggctatcgctgatccgatgatacgagatgattgcaatctcagctctgtagagatggtggcacaattggcactggattgcacggagcccgctgggcaggaccggccaaccttggcggatgttgtgaccacactgacggagagcttgcaactggagatgtcgtggtcgttgccgcactccatgagatccagcaccaccatctcatcatcagctgggttcaccggttcagggcgtgctgatcatgacgccgctgctgactccattgccgtgcttcaagtagaacaggccgtcgtggaaacatcaacaaggtacgtaacatgcgaatgatggcctgtggaattactcgggaatgtgttaatatgtcatgaaccctacgtctagtactcgcgtttgattggcatgaaattcttcctgtatttgggcacgaaatgtttcctcctgttaaatcactggtttctgttacttttggtgaacagagggtgctctgtttttgcctgagtgatcatttctatctttcttaatggtatgtatcatcatatcatccttcagttcccaaaccaatcaactgtatatgcagggaatacatgcatatatccaacgagccatagagtgttgataaaaattgtgaaggaactgatggggctctgatataacacagacaatagtgtgccatgggattttacttgctaactgaaggaacgcatcacaagatggacagtatcagagctagattcttttggaagggattagaggattaaaagagatatcacatacggcacactatgttgcccaaaggaatttggagggctgggatttataaatactggagctatgaatgcatatctgctttgtaagtggatcttcatattagaatagggttcagaagagccatgctgtcaactgcttagagagaaatactatatcggtttcaaaatataagtatttctaggtttttttagtaagaattaagatggaaaaatattttcttttagccccttctgtagttgcattttgaattttgaattacttaagagtcccttcccaagcatctcgttggctaaaaattgtatagattctgtgatataaattttgaatctgcttatatttttggaagagagaaagaaagagagtaaattagtgatgattgatgcctctttcagtcgaatgcttcaggggcttcacaattctggatagggctccacgcagtcaaacgttggatgaactcatgaacaccggaagcgagttctccatacatggccagtatgtctggttaccttgaagcagctgttaaatagatatgtgcaaatggagaatgggacattcagcttcacaggacacttggtgaatctgagttgaggagctggaatgaactgcaaaatattctggatatgaaacgagagatcattgttattttttcgaacacgctttaagcgtcgatgtattagaagctatcaaagttcatttacacgaccgcaccatatgctagcagcaggcaccgccaccagaacgttgtacaaaatgcaaaagtttagcggtgcaagctaaagtttcagggaagaattcaagcggcagcctagcttaagaaaatgaaatggctaagagaaccacactctaagctatgtcggggaaagtgagacagttaaccacacctacagtgtgtggctatatgcgctccttcacagtttatgtgctgttgtttgagaaatgcatacaaatggcgaaacctaccaaccttgcttgataa
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| CDS seq | atgaagaagtcacttcaaaaatctctgcgtgatccgatggttaaaagtttcgaccaaggtctcccaaggatcgtattcttcattgttactatatacactattaatcgggaacagaagaatgtaattttgaatgtttcaatgtctcagtgggaggccgcctttgtggtcaccttaagcttgttgttttgcatccatggtcaactagacaatcttggtttcataagcattgactgtggatatatcacgaggccaagctacccagatttcaagacaaatctaacatatagggatcttgcacaacggtacacaactgtccgctactttcccaatggaactcgcaactgctatacgctcaagcagctaacacgaggtggcaagtatcttgtgagggccacctttgggtatggcaactacgatgctttcaactcacctcctgtctttgatctctatcttggggccaactactgggtcaaggtgaacattaccaactccagcagagcatatgtccatgagacgattgcagtgtctccttctgaattcttgcaggtttgcttggtaaacactgggtcaggaactcctttcatctcagggcttgacctaaggtcactccctgcaaatttttatccggaggccaatgtggcacaatctctagttttgctcagctttttccgtgaaacggtcagttttggcttcaatcgcttccattttggaactgatgagcaccacattaggtacccagttgatcgctacgaccgcttctggcagaggtatgaagacattcctggctgggaagatgttcctgacaaaatcaatgggacagtcaagagcccccaaaacgacacctatggtgcaccttctgatcttatgcgtagtgcatctactgcggtgaatgcctcaaggatggacctgccatggagttctgatgcatccatggatgttggcatcggccccgagtacattgttgtgctatactttgccgaggtgcaggctatctcagataacttgttacggcagttccttgtttctgtggataacaccccgctggctgctgcattcagcccacggcacatgttggctgatgttttctcgggaactgtgctaggctcagaccagcatagcatctccctcattacaacaataatctctgaccttccacctttgattagtgccatggagatattcttagggcggacactgaatgagtcttccactggctcctctgatgccattgccatgatgactatacagacaaagtattctgtgaagaggaactgggagggtgatccttgtgctcccgaagcttttgtatgggatggattgagctgcattcatacttccatcggagacatccaatataatcctaggggtttgcacagaataacagctttgaacttgtcattcagcgaattgattggtgatattgatgcttcctttggtcagcttttgttgctccgacacttggatctatcttacaataacctgtcaggatcaatacctgactttctgggtcaaatgccattgcttacctttctgactggaaataaccccaacctgtgtggaaatcatacatgcgaccccatttctaacaaaaacaagaggaacaaatttataggttttgtaatagctgctgccatagtagctacggtgttcgcgctgtccctatctgcacttttcatttggtacaggagaaggaagacaaacccagatgtgcttcctgaagctgatccatacaagagtcggaggttcaagtacaaggaactccaagtcatcacgaatgactggagaaatgtaattggggagggtggatttggtcatgtctatgctggtcaattggaggatgtaactgacgttgctgtcaaggttgaatcacaaacatctttgcgagggaatcataagcagtttctggcagaggttcaacacctgaccagggttcatcataagaacttggtgtccttaattggctactgtaacgacaagaaacaTCGATGCCTtgtctatgAatacatggatgggggaaccctggagggccggctcagaggtcgtgaagatccacctgaaccaccccttacctggctgcaacgcgttaacattgcactaggatctgccaacggattaaattacctgcacacgatgtgcagtccacggttgattcacagggatgtcaaggcgggaaacatccttctgacagcaaaccttgaagcaaagatatctgactttgggttgacaaggccttccatccatgggacagtggaaacacgcactatgacccaactggctggcactccaggatacatggacccagaatcccttcaagctagtcatccaagtgagagcaacgacgtgtacagcttcggagttgttcttatggtggtcatcacagggagaacagcgatcgtcaccatcaatggcacagagaagaaccttgcacagtgtgtgcgtgactggctttcaagcggaagaggaatcgaggctatcgctgatccgatgatacgagatgattgcaatctcagctctgtagagatggtggcacaattggcactggattgcacggagcccgctgggcaggaccggccaaccttggcggatgttgtgaccacactgacggagagcttgcaactggagatgtcgtggtcgttgccgcactccatgagatccagcaccaccatctcatcatcagctgggttcaccggttcagggcgtgctgatcatgacgccgctgctgactccattgccgtgcttcaagtagaacaggccgtcgtggaaacatcaacaaggggcttcacaattctggatagggctccacgcagtcaaacgttggatgaactcatgaacaccggaagcgagttctccatacatggccagtatgtctggttaccttga
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| Protein seq | MKKSLQKSLRDPMVKSFDQGLPRIVFFIVTIYTINREQKNVILNVSMSQWEAAFVVTLSLLFCIHGQLDNLGFISIDCGYITRPSYPDFKTNLTYRDLAQRYTTVRYFPNGTRNCYTLKQLTRGGKYLVRATFGYGNYDAFNSPPVFDLYLGANYWVKVNITNSSRAYVHETIAVSPSEFLQVCLVNTGSGTPFISGLDLRSLPANFYPEANVAQSLVLLSFFRETVSFGFNRFHFGTDEHHIRYPVDRYDRFWQRYEDIPGWEDVPDKINGTVKSPQNDTYGAPSDLMRSASTAVNASRMDLPWSSDASMDVGIGPEYIVVLYFAEVQAISDNLLRQFLVSVDNTPLAAAFSPRHMLADVFSGTVLGSDQHSISLITTIISDLPPLISAMEIFLGRTLNESSTGSSDAIAMMTIQTKYSVKRNWEGDPCAPEAFVWDGLSCIHTSIGDIQYNPRGLHRITALNLSFSELIGDIDASFGQLLLLRHLDLSYNNLSGSIPDFLGQMPLLTFLTGNNPNLCGNHTCDPISNKNKRNKFIGFVIAAAIVATVFALSLSALFIWYRRRKTNPDVLPEADPYKSRRFKYKELQVITNDWRNVIGEGGFGHVYAGQLEDVTDVAVKVESQTSLRGNHKQFLAEVQHLTRVHHKNLVSLIGYCNDKKHRCLVYEYMDGGTLEGRLRGREDPPEPPLTWLQRVNIALGSANGLNYLHTMCSPRLIHRDVKAGNILLTANLEAKISDFGLTRPSIHGTVETRTMTQLAGTPGYMDPESLQASHPSESNDVYSFGVVLMVVITGRTAIVTINGTEKNLAQCVRDWLSSGRGIEAIADPMIRDDCNLSSVEMVAQLALDCTEPAGQDRPTLADVVTTLTESLQLEMSWSLPHSMRSSTTISSSAGFTGSGRADHDAAADSIAVLQVEQAVVETSTRGFTILDRAPRSQTLDELMNTGSEFSIHGQYVWLP |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g07550 [UniProtKB/Swiss-Prot:C0LGD8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0008730 | OsLima_05g0008730.02 | Chr05 | 8952536 | 8958710 | + | NAM | ||
| CDS seq | atgaagaagtcacttcaaaaatctctgcgtgatccgatggttaaaagtttcgaccaaggtctcccaaggatcgtattcttcattgttactatatacactattaatcgggaacagaagaatgtaattttgaatgtttcaatgtctcagtgggaggccgcctttgtggtcaccttaagcttgttgttttgcatccatggtcaactagacaatcttggtttcataagcattgactgtggatatatcacgaggccaagctacccagatttcaagacaaatctaacatatagggatcttgcacaacggtacacaactgtccgctactttcccaatggaactcgcaactgctatacgctcaagcagctaacacgaggtggcaagtatcttgtgagggccacctttgggtatggcaactacgatgctttcaactcacctcctgtctttgatctctatcttggggccaactactgggtcaaggtgaacattaccaactccagcagagcatatgtccatgagacgattgcagtgtctccttctgaattcttgcaggtttgcttggtaaacactgggtcaggaactcctttcatctcagggcttgacctaaggtcactccctgcaaatttttatccggaggccaatgtggcacaatctctagttttgctcagctttttccgtgaaacggtcagttttggcttcaatcgcttccattttggaactgatgagcaccacattaggtacccagttgatcgctacgaccgcttctggcagaggtatgaagacattcctggctgggaagatgttcctgacaaaatcaatgggacagtcaagagcccccaaaacgacacctatggtgcaccttctgatcttatgcgtagtgcatctactgcggtgaatgcctcaaggatggacctgccatggagttctgatgcatccatggatgttggcatcggccccgagtacattgttgtgctatactttgccgaggtgcaggctatctcagataacttgttacggcagttccttgtttctgtggataacaccccgctggctgctgcattcagcccacggcacatgttggctgatgttttctcgggaactgtgctaggctcagaccagcatagcatctccctcattacaacaataatctctgaccttccacctttgattagtgccatggagatattcttagggcggacactgaatgagtcttccactggctcctctgatgccattgccatgatgactatacagacaaagtattctgtgaagaggaactgggagggtgatccttgtgctcccgaagcttttgtatgggatggattgagctgcattcatacttccatcggagacatccaatataatcctaggggtttgcacagaataacagctttgaacttgtcattcagcgaattgattggtgatattgatgcttcctttggtcagcttttgttgctccgacacttggatctatcttacaataacctgtcaggatcaatacctgactttctgggtcaaatgccattgcttacctttctgactggaaataaccccaacctgtgtggaaatcatacatgcgaccccatttctaacaaaaacaagaggaacaaatttataggttttgtaatagctgctgccatagtagctacggtgttcgcgctgtccctatctgcacttttcatttggtacaggagaaggaagacaaacccagatgtgcttcctgaagctgatccatacaagagtcggaggttcaagtacaaggaactccaagtcatcacgaatgactggagaaatgtaattggggagggtggatttggtcatgtctatgctggtcaattggaggatgtaactgacgttgctgtcaaggttgaatcacaaacatctttgcgagggaatcataagcagtttctggcagaggttcaacacctgaccagggttcatcataagaacttggtgtccttaattggctactgtaacgacaagaaacaTCGATGCCTtgtctatgAatacatggatgggggaaccctggagggccggctcagaggtcgtgaagatccacctgaaccaccccttacctggctgcaacgcgttaacattgcactaggatctgccaacggattaaattacctgcacacgatgtgcagtccacggttgattcacagggatgtcaaggcgggaaacatccttctgacagcaaaccttgaagcaaagatatctgactttgggttgacaaggccttccatccatgggacagtggaaacacgcactatgacccaactggctggcactccaggatacatggacccagaatcccttcaagctagtcatccaagtgagagcaacgacgtgtacagcttcggagttgttcttatggtggtcatcacagggagaacagcgatcgtcaccatcaatggcacagagaagaaccttgcacagtgtgtgcgtgactggctttcaagcggaagaggaatcgaggctatcgctgatccgatgatacgagatgattgcaatctcagctctgtagagatggtggcacaattggcactggattgcacggagcccgctgggcaggaccggccaaccttggcggatgttgtgaccacactgacggagagcttgcaactggagatgtcgtggtcgttgccgcactccatgagatccagcaccaccatctcatcatcagctgggttcaccggttcagggcgtgctgatcatgacgccgctgctgactccattgccgtgcttcaagtagaacaggccgtcgtggaaacatcaacaaggtacgtaacatgcgaatga
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| Protein seq | MKKSLQKSLRDPMVKSFDQGLPRIVFFIVTIYTINREQKNVILNVSMSQWEAAFVVTLSLLFCIHGQLDNLGFISIDCGYITRPSYPDFKTNLTYRDLAQRYTTVRYFPNGTRNCYTLKQLTRGGKYLVRATFGYGNYDAFNSPPVFDLYLGANYWVKVNITNSSRAYVHETIAVSPSEFLQVCLVNTGSGTPFISGLDLRSLPANFYPEANVAQSLVLLSFFRETVSFGFNRFHFGTDEHHIRYPVDRYDRFWQRYEDIPGWEDVPDKINGTVKSPQNDTYGAPSDLMRSASTAVNASRMDLPWSSDASMDVGIGPEYIVVLYFAEVQAISDNLLRQFLVSVDNTPLAAAFSPRHMLADVFSGTVLGSDQHSISLITTIISDLPPLISAMEIFLGRTLNESSTGSSDAIAMMTIQTKYSVKRNWEGDPCAPEAFVWDGLSCIHTSIGDIQYNPRGLHRITALNLSFSELIGDIDASFGQLLLLRHLDLSYNNLSGSIPDFLGQMPLLTFLTGNNPNLCGNHTCDPISNKNKRNKFIGFVIAAAIVATVFALSLSALFIWYRRRKTNPDVLPEADPYKSRRFKYKELQVITNDWRNVIGEGGFGHVYAGQLEDVTDVAVKVESQTSLRGNHKQFLAEVQHLTRVHHKNLVSLIGYCNDKKHRCLVYEYMDGGTLEGRLRGREDPPEPPLTWLQRVNIALGSANGLNYLHTMCSPRLIHRDVKAGNILLTANLEAKISDFGLTRPSIHGTVETRTMTQLAGTPGYMDPESLQASHPSESNDVYSFGVVLMVVITGRTAIVTINGTEKNLAQCVRDWLSSGRGIEAIADPMIRDDCNLSSVEMVAQLALDCTEPAGQDRPTLADVVTTLTESLQLEMSWSLPHSMRSSTTISSSAGFTGSGRADHDAAADSIAVLQVEQAVVETSTRYVTCE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0008730 | OsLima_05g0008730.01 | Chr05 | 8952536 | 8960005 | + | NAM | ||
| CDS seq | atgaagaagtcacttcaaaaatctctgcgtgatccgatggttaaaagtttcgaccaaggtctcccaaggatcgtattcttcattgttactatatacactattaatcgggaacagaagaatgtaattttgaatgtttcaatgtctcagtgggaggccgcctttgtggtcaccttaagcttgttgttttgcatccatggtcaactagacaatcttggtttcataagcattgactgtggatatatcacgaggccaagctacccagatttcaagacaaatctaacatatagggatcttgcacaacggtacacaactgtccgctactttcccaatggaactcgcaactgctatacgctcaagcagctaacacgaggtggcaagtatcttgtgagggccacctttgggtatggcaactacgatgctttcaactcacctcctgtctttgatctctatcttggggccaactactgggtcaaggtgaacattaccaactccagcagagcatatgtccatgagacgattgcagtgtctccttctgaattcttgcaggtttgcttggtaaacactgggtcaggaactcctttcatctcagggcttgacctaaggtcactccctgcaaatttttatccggaggccaatgtggcacaatctctagttttgctcagctttttccgtgaaacggtcagttttggcttcaatcgcttccattttggaactgatgagcaccacattaggtacccagttgatcgctacgaccgcttctggcagaggtatgaagacattcctggctgggaagatgttcctgacaaaatcaatgggacagtcaagagcccccaaaacgacacctatggtgcaccttctgatcttatgcgtagtgcatctactgcggtgaatgcctcaaggatggacctgccatggagttctgatgcatccatggatgttggcatcggccccgagtacattgttgtgctatactttgccgaggtgcaggctatctcagataacttgttacggcagttccttgtttctgtggataacaccccgctggctgctgcattcagcccacggcacatgttggctgatgttttctcgggaactgtgctaggctcagaccagcatagcatctccctcattacaacaataatctctgaccttccacctttgattagtgccatggagatattcttagggcggacactgaatgagtcttccactggctcctctgatgccattgccatgatgactatacagacaaagtattctgtgaagaggaactgggagggtgatccttgtgctcccgaagcttttgtatgggatggattgagctgcattcatacttccatcggagacatccaatataatcctaggggtttgcacagaataacagctttgaacttgtcattcagcgaattgattggtgatattgatgcttcctttggtcagcttttgttgctccgacacttggatctatcttacaataacctgtcaggatcaatacctgactttctgggtcaaatgccattgcttacctttctgactggaaataaccccaacctgtgtggaaatcatacatgcgaccccatttctaacaaaaacaagaggaacaaatttataggttttgtaatagctgctgccatagtagctacggtgttcgcgctgtccctatctgcacttttcatttggtacaggagaaggaagacaaacccagatgtgcttcctgaagctgatccatacaagagtcggaggttcaagtacaaggaactccaagtcatcacgaatgactggagaaatgtaattggggagggtggatttggtcatgtctatgctggtcaattggaggatgtaactgacgttgctgtcaaggttgaatcacaaacatctttgcgagggaatcataagcagtttctggcagaggttcaacacctgaccagggttcatcataagaacttggtgtccttaattggctactgtaacgacaagaaacaTCGATGCCTtgtctatgAatacatggatgggggaaccctggagggccggctcagaggtcgtgaagatccacctgaaccaccccttacctggctgcaacgcgttaacattgcactaggatctgccaacggattaaattacctgcacacgatgtgcagtccacggttgattcacagggatgtcaaggcgggaaacatccttctgacagcaaaccttgaagcaaagatatctgactttgggttgacaaggccttccatccatgggacagtggaaacacgcactatgacccaactggctggcactccaggatacatggacccagaatcccttcaagctagtcatccaagtgagagcaacgacgtgtacagcttcggagttgttcttatggtggtcatcacagggagaacagcgatcgtcaccatcaatggcacagagaagaaccttgcacagtgtgtgcgtgactggctttcaagcggaagaggaatcgaggctatcgctgatccgatgatacgagatgattgcaatctcagctctgtagagatggtggcacaattggcactggattgcacggagcccgctgggcaggaccggccaaccttggcggatgttgtgaccacactgacggagagcttgcaactggagatgtcgtggtcgttgccgcactccatgagatccagcaccaccatctcatcatcagctgggttcaccggttcagggcgtgctgatcatgacgccgctgctgactccattgccgtgcttcaagtagaacaggccgtcgtggaaacatcaacaaggggcttcacaattctggatagggctccacgcagtcaaacgttggatgaactcatgaacaccggaagcgagttctccatacatggccagtatgtctggttaccttga
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| Protein seq | MKKSLQKSLRDPMVKSFDQGLPRIVFFIVTIYTINREQKNVILNVSMSQWEAAFVVTLSLLFCIHGQLDNLGFISIDCGYITRPSYPDFKTNLTYRDLAQRYTTVRYFPNGTRNCYTLKQLTRGGKYLVRATFGYGNYDAFNSPPVFDLYLGANYWVKVNITNSSRAYVHETIAVSPSEFLQVCLVNTGSGTPFISGLDLRSLPANFYPEANVAQSLVLLSFFRETVSFGFNRFHFGTDEHHIRYPVDRYDRFWQRYEDIPGWEDVPDKINGTVKSPQNDTYGAPSDLMRSASTAVNASRMDLPWSSDASMDVGIGPEYIVVLYFAEVQAISDNLLRQFLVSVDNTPLAAAFSPRHMLADVFSGTVLGSDQHSISLITTIISDLPPLISAMEIFLGRTLNESSTGSSDAIAMMTIQTKYSVKRNWEGDPCAPEAFVWDGLSCIHTSIGDIQYNPRGLHRITALNLSFSELIGDIDASFGQLLLLRHLDLSYNNLSGSIPDFLGQMPLLTFLTGNNPNLCGNHTCDPISNKNKRNKFIGFVIAAAIVATVFALSLSALFIWYRRRKTNPDVLPEADPYKSRRFKYKELQVITNDWRNVIGEGGFGHVYAGQLEDVTDVAVKVESQTSLRGNHKQFLAEVQHLTRVHHKNLVSLIGYCNDKKHRCLVYEYMDGGTLEGRLRGREDPPEPPLTWLQRVNIALGSANGLNYLHTMCSPRLIHRDVKAGNILLTANLEAKISDFGLTRPSIHGTVETRTMTQLAGTPGYMDPESLQASHPSESNDVYSFGVVLMVVITGRTAIVTINGTEKNLAQCVRDWLSSGRGIEAIADPMIRDDCNLSSVEMVAQLALDCTEPAGQDRPTLADVVTTLTESLQLEMSWSLPHSMRSSTTISSSAGFTGSGRADHDAAADSIAVLQVEQAVVETSTRGFTILDRAPRSQTLDELMNTGSEFSIHGQYVWLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0246600 | RBH | 0.202890 | 0.116619 | 0.700591 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g15720 | RBH | 0.136036 | 0.077768 | 0.178810 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0246600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0008800 | RBH | 0.178634 | 0.0 | 1.081183 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0008850 | RBH | 0.321798 | 2.029779 | 0.756611 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0008730 | RBH | 0.340824 | 0.0 | 1.285336 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0008820 | RBH | 0.000000 | 0.030918 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0008890 | RBH | 0.486297 | 0.420980 | 2.209574 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0134000 | RBH | 0.4748945 | 0.391167 | 0.3133275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0008750 | RBH | 0.108909 | 0.000000 | 0.139014 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0132800 | RBH | 0.602963 | 0.5723815 | 5.009892 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008680 | RBH | 0.050739 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0008780 | RBH | 0.000000 | 1.298916 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0008860 | RBH | 0.0 | 0.075448 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008790 | RBH | 0.032952 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008620 | RBH | 0.0 | 0.000000 | 0.325245 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0008890 | RBH | 0.568251 | 0.000000 | 1.189897 |
