Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0007210 | OGI:05018400 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:6888896-6891284 | ||||||||
| Gene Symbol | GELP64, OsGELP64, OsGELP64a, OsGELP64b, MHZ11, OsMHZ11 | ||||||||||
| DNA seq | TCCCCTCCTCATTTGCTTCTTCTTCTTCTTCCTCCTCTTTGTTTCACACTTGTGGTTTGTGGTTGCCAACTTTGTGAGCGACCcatggagatgaggagggtggcggtgctggggttggtgtggctggcggtggcggcgacggtggccgtggcggatccgctgccgtcgtactacaacgcgatattcagcttcggcgactccttctccgacacgggcaacttcgtcatcatcaactccggcaagctccccaacatgcccaagttccctccgccgtacgcccgctgctccaacggccgcctcgtcatcgacttcctcggtacgtcgccggtttaccggccatgatcatcatcatcatcatcatctcctcgatcgaatgcgagtggtttgattcggttggatttgcagccgaggcgttcgggctgccgctgctgccgccgtcggcgaacaagggcaccaacttcagccagggcgccaacttcgccgtcatgggcgcCAccgccctcgacctcaaatacttcaaggacaacaatgtctggagcatccctcctttcaacacctccatgaacgtccagctccagtggttcgacgaggtcaagcaaaccatctgctcctcccctcaaggtccgtccatctccaattctccgcatcgccattgccatcgccgccgtcgatctaattgaattcaagaacatgtaaataaatacagagtgcagggagtTCttctccaaggcgctgttcgtgttcggcgagttcggaggcaacgactacagcttcgcgtggaaggcggagtggagcctggagaaggtgaagacgatggtgcccagcgtggtggcctccatggtggggggcatcgagcggctgctcgacgagggcgcgcgccacgtcgtcgtgccggggaacctccccgccggctgcatcccgatcacgctcaccatgtacgccaccgaggaccgcagcgagtacgacccccGcaccggctgcctcaagaagtacaacagcgtcgcgctctaccacaacgccatgctccgcatcgccctcgaccagctccagcgccgccgccccgactcccgcatcgtctacgccgactactacaccccctacatccagttcgcccgcacccctcacctctacggtaagtctatcttaacttctggctatgtatctggacatatctacgttctttttttttcttttgccgtgcaactctgctttcctctgcaatgtgatgttcaagacagaaatggtagtttgagggttggtcagtatggggccgggggaccatgccaggcagcattgcagtacagcaagagctagcactggatgatggttgggggtactgtgtgtgcagggcggccagccactgacactaacctgacggttacatctcacaaaaccgtacccatcatctcacccacactCccacacaaaccgtgtcgggttggtttggtggtgctcgttgctcctagcgtgcgccacaacattccatttctattgtttttctgttcaaccatggcagccaaccaaacagccccgtaatcttcttgacgtcccgacggctaccgtcgggataacgaggattttctagagttacttcgctataacAgtacggtgtcattttgctgtcttaaggtatcaatccttgggaggggagatggtcctgaactcatcatcgtcgtcggcgagttagaggcagagcagagtagatacgccggtgtcagcggccagagcaacggtgtctgtgagttcacctaccaacacgtacgcgcagtggcacagctgttggcgtatctgctgcagtgaccgtccatggccaggtcaccttgttttggcttgatccggcaccattactggggacaaacatcttctctcatctcccacaattattcctcccaacatctgattaactctgcacaataatcaatcaaatccctcattggaagcaatcactaggttggtgtgtctgatcatcgccaggtgtatgaagtctgaacaaagaatctcagcagtagcaggatacatcagagcatcagagttgcagaacagagtctgcattgcatcttacaagctgttaatctcactcgacctgtggattcattcaagaaccgattgagagttgacatgagaaatgtgtttgatgatctttgatgcaggatacaagaggggcgcgctgagggcgtgctgcggcggcggcgggccgtacaactacaacatgagcgcgtcgtgcgggctccccggcgcgacgacgtgcgaggatcccgacgctcacgtcagctgggacggcatccacctcaccgaggcgccctaccgcttcatcgccaacacctggatcaggggcccctacgcccaccctcccctcgccagcgttgtccgcgacgacatggtctattag
More
|
||||||||||
| CDS seq | atggagatgaggagggtggcggtgctggggttggtgtggctggcggtggcggcgacggtggccgtggcggatccgctgccgtcgtactacaacgcgatattcagcttcggcgactccttctccgacacgggcaacttcgtcatcatcaactccggcaagctccccaacatgcccaagttccctccgccccagggcgccaacttcgccgtcatgggcgcCAccgccctcgacctcaaatacttcaaggacaacaatgtctggagcatccctcctttcaacacctccatgaacgtccagctccagtggttcgacgaggtcaagcaaaccatctgctcctcccctcaagagtgcagggagtTCttctccaaggcgctgttcgtgttcggcgagttcggaggcaacgactacagcttcgcgtggaaggcggagtggagcctggagaaggtgaagacgatggtgcccagcgtggtggcctccatggtggggggcatcgagcggctgctcgacgagggcgcgcgccacgtcgtcgtgccggggaacctccccgccggctgcatcccgatcacgctcaccatgtacgccaccgaggaccgcagcgagtacgacccccGcaccggctgcctcaagaagtacaacagcgtcgcgctctaccacaacgccatgctccgcatcgccctcgaccagctccagcgccgccgccccgactcccgcatcaggggcgcgctgagggcgtgctgcggcggcggcgggccgtacaactacaacatgagcgcgtcgtgcgggctccccggcgcgacgacgtgcgaggatcccgacgctcacgtcagctgggacggcatccacctcaccgaggcgccctaccgcttcatcgccaacacctggatcaggggcccctacgcccaccctcccctcgccagcgttgtccgcgacgacatggtctattag
More
|
||||||||||
| Protein seq | MEMRRVAVLGLVWLAVAATVAVADPLPSYYNAIFSFGDSFSDTGNFVIINSGKLPNMPKFPPPQGANFAVMGATALDLKYFKDNNVWSIPPFNTSMNVQLQWFDEVKQTICSSPQECREFFSKALFVFGEFGGNDYSFAWKAEWSLEKVKTMVPSVVASMVGGIERLLDEGARHVVVPGNLPAGCIPITLTMYATEDRSEYDPRTGCLKKYNSVALYHNAMLRIALDQLQRRRPDSRIRGALRACCGGGGPYNYNMSASCGLPGATTCEDPDAHVSWDGIHLTEAPYRFIANTWIRGPYAHPPLASVVRDDMVY |
||||||||||
| Function | GDSL esterase/lipase At1g28600 [UniProtKB/Swiss-Prot:Q94F40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0007210 | OsLima_05g0007210.01 | Chr05 | 6888980 | 6891284 | + | NAM | ||
| CDS seq | atggagatgaggagggtggcggtgctggggttggtgtggctggcggtggcggcgacggtggccgtggcggatccgctgccgtcgtactacaacgcgatattcagcttcggcgactccttctccgacacgggcaacttcgtcatcatcaactccggcaagctccccaacatgcccaagttccctccgccccagggcgccaacttcgccgtcatgggcgcCAccgccctcgacctcaaatacttcaaggacaacaatgtctggagcatccctcctttcaacacctccatgaacgtccagctccagtggttcgacgaggtcaagcaaaccatctgctcctcccctcaagagtgcagggagtTCttctccaaggcgctgttcgtgttcggcgagttcggaggcaacgactacagcttcgcgtggaaggcggagtggagcctggagaaggtgaagacgatggtgcccagcgtggtggcctccatggtggggggcatcgagcggctgctcgacgagggcgcgcgccacgtcgtcgtgccggggaacctccccgccggctgcatcccgatcacgctcaccatgtacgccaccgaggaccgcagcgagtacgacccccGcaccggctgcctcaagaagtacaacagcgtcgcgctctaccacaacgccatgctccgcatcgccctcgaccagctccagcgccgccgccccgactcccgcatcaggggcgcgctgagggcgtgctgcggcggcggcgggccgtacaactacaacatgagcgcgtcgtgcgggctccccggcgcgacgacgtgcgaggatcccgacgctcacgtcagctgggacggcatccacctcaccgaggcgccctaccgcttcatcgccaacacctggatcaggggcccctacgcccaccctcccctcgccagcgttgtccgcgacgacatggtctattag
More
|
|||||||
| Protein seq | MEMRRVAVLGLVWLAVAATVAVADPLPSYYNAIFSFGDSFSDTGNFVIINSGKLPNMPKFPPPQGANFAVMGATALDLKYFKDNNVWSIPPFNTSMNVQLQWFDEVKQTICSSPQECREFFSKALFVFGEFGGNDYSFAWKAEWSLEKVKTMVPSVVASMVGGIERLLDEGARHVVVPGNLPAGCIPITLTMYATEDRSEYDPRTGCLKKYNSVALYHNAMLRIALDQLQRRRPDSRIRGALRACCGGGGPYNYNMSASCGLPGATTCEDPDAHVSWDGIHLTEAPYRFIANTWIRGPYAHPPLASVVRDDMVY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0007210 | OsLima_05g0007210.02 | Chr05 | 6888896 | 6891088 | + | IsoSeq | ||
| CDS seq | CCCCTCCTCATTTGCTTCTTCTTCTTCTTCCTCCTCTTTGTTTCACACTTGTGGTTTGTGGTTGCCAACTTTGTGAGCGACCcatgg |
|||||||
| Protein seq | PLLICFFFFFLLFVSHLWFVVANFVSDPW |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.224991 | 0.968689 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0210100 | RBH | 0.272456 | 0.000000 | 5.200229 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11950 | RBH | 0.294272 | 0.318632 | 1.302005 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0210100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007250 | RBH | 0.276127 | 50.612095 | 25.624144 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007280 | RBH | 0.148746 | 16.617186 | 7.102828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007170 | RBH | 0.562277 | 71.193367 | 22.845793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007230 | RBH | 0.0 | 3.136115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007320 | RBH | 0.936381 | 110.499344 | 48.680378 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0101800 | RBH | 9.467956 | 7.593107 | 22.5680665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007180 | RBH | 0.000000 | 6.872915 | 3.433439 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0100600 | RBH | 9.538908 | 1.67399 | 0.9326185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0006790 | SBH | 0.000000 | 0.213774 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007150 | RBH | 0.632386 | 96.296158 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007250 | RBH | 1.785496 | 72.674492 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007310 | RBH | 0.283580 | 7.865827 | 4.157444 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007260 | RBH | 0.000000 | 46.226620 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G007030 | RBH | 0.368209 | 33.548527 | 11.814392 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007270 | RBH | 2.206066 | 32.794624 | 19.440170 |
