Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0007040 | OGI:05018050 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:6723760-6726123 | ||||||||
| Gene Symbol | OsRPL5, RPL5 | ||||||||||
| DNA seq | ttccgccgccgaagccaccacacctaaacccttcttccctctcctcctccgccgccgccgccctcccctctcgccatggtgagtgaacccctcctcccccctcgccgccgccggtgaaatgctcggcttctccgtccatcatagtgtgacggggtttcgtggagattggttggttgctcacgccgcgtgttttttgtttttttttggggggttttgcaggcgtcggagaagaagcagtcgaacccgatgcgggagatcaaggtgcagaagctcgtgctcaacatctccgtcggcgagagcggcgacaggctcacccgcgcctccaaggtatatcctccattggttcgattgatttgggtggtagatctgctcgtccgcgatatgctctaagcaaaagtttgtctcaagaaatgcatgcgtcgcagttcgaatcgaattcttgcttccgcttccacgatcttctgtatgcaactcttgatttctttttaatcaaaaaaaattctctgtttcgttctccttcctaggtgttggagcagctGAgtgggcagagcccagttttctccaagggtaagcgaattttgttccaagctttgtaatctctttcatcgcgttgttaccaatggtccaccgtgtggtttggtttcttacggtgagagcgatgcgatgtttgcagcgaggtacaccgtgaggtcattcggtatccgtcgtaacgagaagatcgcgtgctacgtcaccgtcaggggcgagaaggccatgcagcttttggagagtggcctcaaggtcaaggagtacgagctgctgaggaggaacttcagcgagaccggatgcttcgggttcggtatccaggagcacattgatcttggcatcaagtaggaccatctatctgtcttgcactcatgttaattcatacggtttcagtgtgctttccttctgtttatatggctatgacgaattggttgTggttgtccggtctctggacgtttattttcctgatgccattgcaatctgctttggtggataataggcttggtagatgttcctatgtgaaatataaacacatgtgcatttttgaatgctcagttgctcgttctttacatttgccgttataaatcattattctatcatataccgaatgattttatttgcacatatagcctactagttttgttccttaagtcattgtatgtcatttcataaatgccacaatttgatccttagtcattgtatgtcatttcataaatgccacaatttgacattgcatggaatttctgatgtgtgcgccattgtttatttctacatgaagtggaaatttgtgatgcatgaacgaaatttttgcccctctttggtactgtcctagtttaaatagttttacatagaagttattttatatgaacccaggtgtaactataggggcttatgacctcaagttagataatgttattccaggttaaatatcttaatttaaccatgattaaccaagatcagaacactgttctcatctttatcaaatagtttacttttgattgtttttgtgaccttatattacgatgTttcttgtctacaattaacattctgcaacattccttatgtttcctagtttatattttggtgttactttgcaactcatttgcttgagccacttgtatatctgaaacaccttttctgtgctttgtattgtagataattcgtattgtagacaatcttataccaagcgtaactaggagtactcgtgctaagagaattaacttgtctaatcaatgtttcaggtacgacccgtcaactggtatttatggcatggacttctatgttgttcttgagcgtgctggataccgtgttgctcgccggcgcaggtgcaagtcccgtgttggaatccagcacagggtgaccaaggaagatgccatgaagtggttccaggtcaagtatgagggtgtcatcctcaacaaggcccaagcaaacacgtcgtaattggcaagggtttaaccagttatcctgtagaattaagtgagggttcatttgaatcatggaactgtctttcttgaaagccaaatgcactgtcaattttgcctctgttggagttgacctgcgtctatatttccattaaatgcttaatgatatccttgttttaaatcttaatattaaggcagacttggaatcaatccacccgctttgttacctgtatttctgccttatcctgtgtcaggcaaaagctaagtagcaacggtcaaattgttcattttagtgatgttttatttggggtgccaatttcttcttttggactgcgacttgtgacatcttcatggcggtatacatcttactctcttggtaatgtcaatgcattgctatgctttgggcgcatgtttttat
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| CDS seq | atggcgtcggagaagaagcagtcgaacccgatgcgggagatcaaggtgcagaagctcgtgctcaacatctccgtcggcgagagcggcgacaggctcacccgcgcctccaaggtgttggagcagctGAgtgggcagagcccagttttctccaaggcgaggtacaccgtgaggtcattcggtatccgtcgtaacgagaagatcgcgtgctacgtcaccgtcaggggcgagaaggccatgcagcttttggagagtggcctcaaggtcaaggagtacgagctgctgaggaggaacttcagcgagaccggatgcttcgggttcggtatccaggagcacattgatcttggcatcaagtacgacccgtcaactggtatttatggcatggacttctatgttgttcttgagcgtgctggataccgtgttgctcgccggcgcaggtgcaagtcccgtgttggaatccagcacagggtgaccaaggaagatgccatgaagtggttccaggtcaagtatgagggtgtcatcctcaacaaggcccaagcaaacacgtcgtaa
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| Protein seq | MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANTS |
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| Function | 60S ribosomal protein L11 [UniProtKB/Swiss-Prot:Q0DK10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0007040 | OsLima_05g0007040.01 | Chr05 | 6723760 | 6726123 | + | NAM | ||
| CDS seq | atggcgtcggagaagaagcagtcgaacccgatgcgggagatcaaggtgcagaagctcgtgctcaacatctccgtcggcgagagcggcgacaggctcacccgcgcctccaaggtgttggagcagctGAgtgggcagagcccagttttctccaaggcgaggtacaccgtgaggtcattcggtatccgtcgtaacgagaagatcgcgtgctacgtcaccgtcaggggcgagaaggccatgcagcttttggagagtggcctcaaggtcaaggagtacgagctgctgaggaggaacttcagcgagaccggatgcttcgggttcggtatccaggagcacattgatcttggcatcaagtacgacccgtcaactggtatttatggcatggacttctatgttgttcttgagcgtgctggataccgtgttgctcgccggcgcaggtgcaagtcccgtgttggaatccagcacagggtgaccaaggaagatgccatgaagtggttccaggtcaagtatgagggtgtcatcctcaacaaggcccaagcaaacacgtcgtaa
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| Protein seq | MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.408115 | 1.968869 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0207300 | RBH | 8.955221 | 8.564214 | 27.554325 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11710 | RBH | 5.437756 | 5.194070 | 6.413494 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0207300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007050 | RBH | 3.391256 | 30.705183 | 23.726374 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007100 | RBH | 0.949661 | 32.394924 | 12.373980 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006990 | RBH | 8.239030 | 79.330330 | 26.592474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007040 | RBH | 1.016626 | 6.063046 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007140 | RBH | 25.836628 | 147.894333 | 49.073925 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0099700 | RBH | 68.3404885 | 85.04348 | 72.997036 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006980 | RBH | 3.132737 | 13.831722 | 5.536542 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0098700 | RBH | 53.4254555 | 48.930214 | 137.4914015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007180 | RBH | 0.918674 | 1.110192 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006970 | RBH | 0.872016 | 137.134125 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007050 | RBH | 24.051334 | 146.734573 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007140 | RBH | 4.116792 | 9.636647 | 5.741614 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007090 | RBH | 0.881203 | 77.859253 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006860 | RBH | 2.642771 | 81.910225 | 14.493648 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007110 | RBH | 5.802415 | 111.549271 | 29.650314 |
