Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0005190 | OGI:05012890 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:4702364-4705073 | ||||||||
| Gene Symbol | C3H34, OsC3H34, DLN132, OsDLN132 | ||||||||||
| DNA seq | ccttaatatggatcccttcttcatccgcacattcactggcaggttaactcataagaatttgttcaaagaaagttgtcactagaccttctgtgaccttttgactgaattgctttcatcctcaaaaaaaaaaaaaaaactgttgacatcatcctaaccaagtaaagcagaaatctcactgagctgcacttttacataaacacttgctaggatatggtcacttgacaacagaactcctactcttagtcatgagaagctcggtcagagatttgggcccctcaaaatcatctgagaaggatctcacattaggcgtgcaagcagtggagtggctaaaacttgagttggatttacaTttctcttcttttatctgagcaagggtcttcggcccagtaaagtctgcagtaggatgttcagaagatttagcagaaagaacatgctgttgctttcctctatttttcttcctccgtCccctgaaagtagcatggttagcaggttgaggacactctcccatcaaataatctttcctttgacgagttggcattgattcaatctgttgagtactattcttgggttcaaggcaacggcttctcttaatgcaatccttctttccctttgcaccttttctattctcaggtcttctttttgagatgtgtctaatctgggtttgctgatgaacaaagttagtatctgccactgagctggtgaagtttctgggattgaagaaccttctgtcatattcatcagaagtgacctcagtattttgtggtagtaaatgccccaaagtgatctcactttcatgctcatgagctccgttaggctggcaaagataaaggtaaccttgccgatcatcaagaccacaaaattctggttcatagttatagtactctggatcatggtaatacatatcataaagaactggatctctaataccatattctgcatgaagcaccttattatcactctctgtagtcaattgatgttcaagatcactcttgttagagaggcaatcatccacaagcacatcaaatccaggagaggaatcacactcatcttgttctgtgtggtccatagttgaatctcctgaattaagatctgagactgcggaacatttcatgtattcatctatatcagttgatgtttcaagtgcaCcggaaacagcttcagcttcaccaaattcaggattgattgacacaggaacttcTtttatatggcaagaggtatcttgacagggatttgtgatagtgtctttcgattcttcaaccatctcatctccaacataacttttacttatagcaggattggaagtggtagctttacaagaagttcccacagcatcattagaagttagaggctcatggaggtaggggcaattgtcaccTtttgaacagtgcgagttatagtagaaataacaagggttagctgccttgacagaagtagaacacaatgagagtgggtctgctaaagatttggttttgtttaagttttccagtggctgcaccgaaaggagctaatcagataacacgcagcaacagatgagcaatgataacaaaaatagcaacggtgtcattcaaaatcacatagctggaagatctaataagaagatagggttccagtaatcagtcaaatcatttcaatgcataacattagagcataaaactgtggacaagaaaattcaatcaatacttctgagttacttaacaaagaaacggaccatgaccaaccactcatggttgtagtactgaaacaccaaaacttgatctcttatttgtccatttggctcactaacataaacaaagacaaaaaaaagaaaaagaaagttgggtcaattggccctttgttcctgaattttcctcattagatgagagcagtggcctccaaaccgtcgggggcacaacacaaaataaaactacactgcgactcatgtgaaacaaaaaatttcataacatcatcgctatggctaaactggcagacaggccctcatgcaagatggactcaagggttggagctgtacatggtggcatcaggaaatgtacaattgttagtatcaagcaattgctcacaggcagacatgttattccagaaccaagtcatcttatcccaacattttcctcaagtttcgtggttcttcccccatccaagttaacacgataaatgtacaacaatggcatcaatcaccactaataactagcaaagcaaagtatgaatccttggcatccgatacgaagcgaagggtatcgaaccgagtgaccgcggattactcacggggtgacgaaatgtgcagctcgggttgacgcagttgcccttgaaccagtaccagcaattccggcggttgaaccgggcgccatcggcatggcggtactcgcacttggacccctgcaaccaaaaacccacgcgctcaatacgcggcgcgctccggacggatgatcaaccagcggcggcatccaccgccatgccggaaacgcggaatccgtgagaagaaaaaaagtgagctagggttttggggaagttgggtggactagtaccttggtgcaggtgaagggggaggcgaggaagtagacgcagtcggtgttgcacctcctcgagcgcgggtcctcatcgccctccgccgcggccgccattgctccacttcctctctcggctctcctctcctctccgcgggaggagggatgaggaggaggcggcggcggaggaggaaaagcggagcgcgacggcc
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| CDS seq | atggcggccgcggcggagggcgatgaggacccgcgctcgaggaggtgcaacaccgactgcgtctacttcctcgcctcccccttcacctgcaccaaggggtccaagtgcgagtaccgccatgccgatggcgcccggttcaaccgccggaattgctggtactggttcaagggcaactgcgtcaacccgagctgcacatttcgtcaccccccactggaaaacttaaacaaaaccaaatctttagcagacccactctcattgtgttctacttctgtcaaggcagctaacccttgttatttctactataactcgcactgttcaaaAggtgacaattgcccctacctccatgagcctctaacttctaatgatgctgtgggaacttcttgtaaagctaccacttccaatcctgctataagtaaaagttatgttggagatgagatggttgaagaatcgaaagacactatcacaaatccctgtcaagatacctcttgccatataaaAgaagttcctgtgtcaatcaatcctgaatttggtgaagctgaagctgtttccgGtgcacttgaaacatcaactgatatagatgaatacatgaaatgttccgcagtctcagatcttaattcaggagattcaactatggaccacacagaacaagatgagtgtgattcctctcctggatttgatgtgcttgtggatgattgcctctctaacaagagtgatcttgaacatcaattgactacagagagtgataataaggtgcttcatgcagaatatggtattagagatccagttctttatgatatgtattaccatgatccagagtactataactatgaaccagaattttgtggtcttgatgatcggcaaggttacctttatctttgccagcctaacggagctcatgagcatgaaagtgagatcactttggggcatttactaccacaaaatactgaggtcacttctgatgaatatgacagaaggttcttcaatcccagaaacttcaccagctcagtggcagatactaactttgttcatcagcaaacccagattagacacatctcaaaaagaagacctgagaatagaaaaggtgcaaagggaaagaaggattgcattaagagaagccgttgccttgaacccaagaatagtactcaacagattgaatcaatgccaactcgtcaaaggaaagattatttgatgggagagtgtcctcaacctgctaaccatgctactttcagggGacggaggaagaaaaatagaggaaagcaacagcatgttctttctgctaaatcttctgaacatcctactgcagactttactgggccgaagacccttgctcagataaaagaagagaaAtgtaaatccaactcaagttttagccactccactgcttgcacgcctaatgtgagatccttctcagatgattttgaggggcccaaatctctgaccgagcttctcatgactaagagtaggagttctgttgtcaagtga
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| Protein seq | MAAAAEGDEDPRSRRCNTDCVYFLASPFTCTKGSKCEYRHADGARFNRRNCWYWFKGNCVNPSCTFRHPPLENLNKTKSLADPLSLCSTSVKAANPCYFYYNSHCSKGDNCPYLHEPLTSNDAVGTSCKATTSNPAISKSYVGDEMVEESKDTITNPCQDTSCHIKEVPVSINPEFGEAEAVSGALETSTDIDEYMKCSAVSDLNSGDSTMDHTEQDECDSSPGFDVLVDDCLSNKSDLEHQLTTESDNKVLHAEYGIRDPVLYDMYYHDPEYYNYEPEFCGLDDRQGYLYLCQPNGAHEHESEITLGHLLPQNTEVTSDEYDRRFFNPRNFTSSVADTNFVHQQTQIRHISKRRPENRKGAKGKKDCIKRSRCLEPKNSTQQIESMPTRQRKDYLMGECPQPANHATFRGRRKKNRGKQQHVLSAKSSEHPTADFTGPKTLAQIKEEKCKSNSSFSHSTACTPNVRSFSDDFEGPKSLTELLMTKSRSSVVK |
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| Function | Zinc finger CCCH domain-containing protein 34 [UniProtKB/Swiss-Prot:Q6AT25] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0005190 | OsLima_05g0005190.01 | Chr05 | 4702364 | 4705073 | - | NAM | ||
| CDS seq | atggcggccgcggcggagggcgatgaggacccgcgctcgaggaggtgcaacaccgactgcgtctacttcctcgcctcccccttcacctgcaccaaggggtccaagtgcgagtaccgccatgccgatggcgcccggttcaaccgccggaattgctggtactggttcaagggcaactgcgtcaacccgagctgcacatttcgtcaccccccactggaaaacttaaacaaaaccaaatctttagcagacccactctcattgtgttctacttctgtcaaggcagctaacccttgttatttctactataactcgcactgttcaaaAggtgacaattgcccctacctccatgagcctctaacttctaatgatgctgtgggaacttcttgtaaagctaccacttccaatcctgctataagtaaaagttatgttggagatgagatggttgaagaatcgaaagacactatcacaaatccctgtcaagatacctcttgccatataaaAgaagttcctgtgtcaatcaatcctgaatttggtgaagctgaagctgtttccgGtgcacttgaaacatcaactgatatagatgaatacatgaaatgttccgcagtctcagatcttaattcaggagattcaactatggaccacacagaacaagatgagtgtgattcctctcctggatttgatgtgcttgtggatgattgcctctctaacaagagtgatcttgaacatcaattgactacagagagtgataataaggtgcttcatgcagaatatggtattagagatccagttctttatgatatgtattaccatgatccagagtactataactatgaaccagaattttgtggtcttgatgatcggcaaggttacctttatctttgccagcctaacggagctcatgagcatgaaagtgagatcactttggggcatttactaccacaaaatactgaggtcacttctgatgaatatgacagaaggttcttcaatcccagaaacttcaccagctcagtggcagatactaactttgttcatcagcaaacccagattagacacatctcaaaaagaagacctgagaatagaaaaggtgcaaagggaaagaaggattgcattaagagaagccgttgccttgaacccaagaatagtactcaacagattgaatcaatgccaactcgtcaaaggaaagattatttgatgggagagtgtcctcaacctgctaaccatgctactttcagggGacggaggaagaaaaatagaggaaagcaacagcatgttctttctgctaaatcttctgaacatcctactgcagactttactgggccgaagacccttgctcagataaaagaagagaaAtgtaaatccaactcaagttttagccactccactgcttgcacgcctaatgtgagatccttctcagatgattttgaggggcccaaatctctgaccgagcttctcatgactaagagtaggagttctgttgtcaagtga
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| Protein seq | MAAAAEGDEDPRSRRCNTDCVYFLASPFTCTKGSKCEYRHADGARFNRRNCWYWFKGNCVNPSCTFRHPPLENLNKTKSLADPLSLCSTSVKAANPCYFYYNSHCSKGDNCPYLHEPLTSNDAVGTSCKATTSNPAISKSYVGDEMVEESKDTITNPCQDTSCHIKEVPVSINPEFGEAEAVSGALETSTDIDEYMKCSAVSDLNSGDSTMDHTEQDECDSSPGFDVLVDDCLSNKSDLEHQLTTESDNKVLHAEYGIRDPVLYDMYYHDPEYYNYEPEFCGLDDRQGYLYLCQPNGAHEHESEITLGHLLPQNTEVTSDEYDRRFFNPRNFTSSVADTNFVHQQTQIRHISKRRPENRKGAKGKKDCIKRSRCLEPKNSTQQIESMPTRQRKDYLMGECPQPANHATFRGRRKKNRGKQQHVLSAKSSEHPTADFTGPKTLAQIKEEKCKSNSSFSHSTACTPNVRSFSDDFEGPKSLTELLMTKSRSSVVK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.067844 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0176400 | RBH | 0.0 | 0.0 | 1.658724 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08400 | RBH | 0.0 | 0.0 | 0.426988 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0176400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005220 | RBH | 0.0 | 0.0 | 1.415641 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005210 | RBH | 0.0 | 0.602131 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005100 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005200 | RBH | 0.0 | 0.065981 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005290 | RBH | 0.0 | 0.000000 | 1.559501 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0068900 | RBH | 0.2735765 | 0.7804285 | 1.1991045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005050 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0070400 | RBH | 0.2865765 | 1.1206245 | 5.520877 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005130 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005230 | RBH | 0.0 | 0.0 | 0.107116 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005240 | RBH | 0.0 | 0.712715 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005090 | RBH | 0.0 | 0.0 | 0.371142 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005310 | RBH | 0.000000 | 0.000000 | 0.814747 |
