Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0004450 | OGI:05009850 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:3629406-3632199 | ||||||||
| Gene Symbol | OsCrRLK1L10 | ||||||||||
| DNA seq | atggatagtacctttagaaagcttaaattagttctagctcttgttgggatcatcacctggattattggtacctgcaatgcaaaattcacccctgcagacaactatcttgtgaactgtggttccacggtcgatgcaactgttggtcagagggtctttgtagctgacaattcgcagtctattgtgttgacaacccctcagagtcagagcattgctgctagaaccacgctgaattcggtgtcgggtttcgacaatgccgagctgtttcaaaccgcaaggatattcactgcgccgtcgtcctactcattcaagatgagaagcagtggccggcattttgtccggctctacttcttccctttcttgtatcagagctatgatcttgcaagctcaaaattcaaggtgtcaacagaagatgttgttctcattgataatttccctcagccaagcaattccatctcagtggtcatggagtattctctgaacattacaagagacaggctaattctaacttttgtgccggaagggaacagtacatccttcgtcaacgccattgaagttgtgtcggttcctgatgatctaattactgattcggcgcaacttctgggtgttgggcagtatcttggactggcagcacagccattgcaaacattccacaggatcaatgtgggcgggccgaaggtcacagctgaaaatgatactctggctcgaacatggtttgctgatcagagcttcttcagaaatcccactgtcgctcaagcagttacttaccaagaaagactgaattacaaagatggatcagcaacgcaggatgatgcaccagacagtgtctacaatactgcgaggcggttggttgggcagaggaacgccagctccacgccaaacatgacatgggaattcaatgttgatggccgttcaagctacctgattcggttccatttctgcgacatagtgagcaaggcagcatttcagctctactttgatgtctatgtttataacttttcagcagcaaaagatcttgatctctccgccagtgaatttggtacactggcggcgccattctacatggatattgtcttaccatcaagtgacccgtcaggtaacctcactgtcagcataggtccttccagcttgcctaatgcaacacctgatggaatcctgaatggcctggagatcatgaagatgaacttcagcagtggatctgtttacgttgtcaaaccgccatcagcagcgaaacaacaattgcccatcattttaggatctgttcttggaggcattggtgctgttatcattgtcgttgttctctgtgttgttttcagaagaaagaagaagatgaagaaaccgcagacgccattaacaagtcggccttcaagttcttggacaccactctctctcaatgctctcagcttccttagtacaggtacccggacaaccagccggaccacttatacatctggaactaacagcgacacaagctaccggattccttttgttgttctgcaagaggcaacaaaccacttcgatgagcagatggttattggagtcggaggatttgggaaggtctacaaagcagttctgcaggacagcaccaaagttgcagtgaagcgtggcaaccagaagtctcaccaagggattagggaattccggacggagatcgagctgctgtctgggctgcgacaccgccatctcgtgtcgctcattggttactgcgatgagcgcaatgagatgatcttggtgtatgagtacatggagaaaggcactctgaagggtcacctgtatggcggtgaccagcctccactcagctggaagaaaaggctggaaatctgcattggtgctgcaagagggctccactacctccacaccggtttcgcaaaatcgatcatccaccgtgacgtcaagtcagcaaacattctcctcgatgaaaatctcatggccaaggtctctgattttggcctctcaaaaacagggcctgaatttgatcagacacatgttagcaccgccgtgaaagggagtttcggctatcttgatcctgagtactacaggaggcagaagctgaccgacaagtcagacgtgtactcgttcggtgtggtcttgctagaggtgatctgcgcaaggccagtcatcgacccgacgcttccaagagacatgatcaaccttgcagagtgggctattaagtggcaaaagagaggagagcttgatcagatcatcgacaagaggatcgccgggacaatcaggccagaatcgctgaggaagtacggggagacggtggagaaatgcctcgcggagtacggcgtcgaacggcctacgatgggagatgtcctgtggaacctggagttcgtgctccagctgcaggaggcaggcccggacatgtccaacattgatagcatgaatcagatctctgaactcccttcaaatgcccagaggataagctccctggagatcagcactgcagatgaaagccgaacggccatggactactctcagatgtcaaccagtaatgccttctcacagctgatcaacacagaagggaggtgaatttggagtgaaattgtcctaagagtcactgcaaaaaaatgttgaacatgttcagttagggaaaatgagatgtttcttgctcagttgattgtctacactcttgtttgattttgcccagatatatataacaagccttcaattgcattgaatttttgttacccctatactgtacatacatatgtttcttatttatcttaaagcctgaaaatggattatgttacagaatgaacattgttgatatgctgcacatttctcgttggaaaaa
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| CDS seq | atggatagtacctttagaaagcttaaattagttctagctcttgttgggatcatcacctggattattggtacctgcaatgcaaaattcacccctgcagacaactatcttgtgaactgtggttccacggtcgatgcaactgttggtcagagggtctttgtagctgacaattcgcagtctattgtgttgacaacccctcagagtcagagcattgctgctagaaccacgctgaattcggtgtcgggtttcgacaatgccgagctgtttcaaaccgcaaggatattcactgcgccgtcgtcctactcattcaagatgagaagcagtggccggcattttgtccggctctacttcttccctttcttgtatcagagctatgatcttgcaagctcaaaattcaaggtgtcaacagaagatgttgttctcattgataatttccctcagccaagcaattccatctcagtggtcatggagtattctctgaacattacaagagacaggctaattctaacttttgtgccggaagggaacagtacatccttcgtcaacgccattgaagttgtgtcggttcctgatgatctaattactgattcggcgcaacttctgggtgttgggcagtatcttggactggcagcacagccattgcaaacattccacaggatcaatgtgggcgggccgaaggtcacagctgaaaatgatactctggctcgaacatggtttgctgatcagagcttcttcagaaatcccactgtcgctcaagcagttacttaccaagaaagactgaattacaaagatggatcagcaacgcaggatgatgcaccagacagtgtctacaatactgcgaggcggttggttgggcagaggaacgccagctccacgccaaacatgacatgggaattcaatgttgatggccgttcaagctacctgattcggttccatttctgcgacatagtgagcaaggcagcatttcagctctactttgatgtctatgtttataacttttcagcagcaaaagatcttgatctctccgccagtgaatttggtacactggcggcgccattctacatggatattgtcttaccatcaagtgacccgtcaggtaacctcactgtcagcataggtccttccagcttgcctaatgcaacacctgatggaatcctgaatggcctggagatcatgaagatgaacttcagcagtggatctgtttacgttgtcaaaccgccatcagcagcgaaacaacaattgcccatcattttaggatctgttcttggaggcattggtgctgttatcattgtcgttgttctctgtgttgttttcagaagaaagaagaagatgaagaaaccgcagacgccattaacaagtcggccttcaagttcttggacaccactctctctcaatgctctcagcttccttagtacaggtacccggacaaccagccggaccacttatacatctggaactaacagcgacacaagctaccggattccttttgttgttctgcaagaggcaacaaaccacttcgatgagcagatggttattggagtcggaggatttgggaaggtctacaaagcagttctgcaggacagcaccaaagttgcagtgaagcgtggcaaccagaagtctcaccaagggattagggaattccggacggagatcgagctgctgtctgggctgcgacaccgccatctcgtgtcgctcattggttactgcgatgagcgcaatgagatgatcttggtgtatgagtacatggagaaaggcactctgaagggtcacctgtatggcggtgaccagcctccactcagctggaagaaaaggctggaaatctgcattggtgctgcaagagggctccactacctccacaccggtttcgcaaaatcgatcatccaccgtgacgtcaagtcagcaaacattctcctcgatgaaaatctcatggccaaggtctctgattttggcctctcaaaaacagggcctgaatttgatcagacacatgttagcaccgccgtgaaagggagtttcggctatcttgatcctgagtactacaggaggcagaagctgaccgacaagtcagacgtgtactcgttcggtgtggtcttgctagaggtgatctgcgcaaggccagtcatcgacccgacgcttccaagagacatgatcaaccttgcagagtgggctattaagtggcaaaagagaggagagcttgatcagatcatcgacaagaggatcgccgggacaatcaggccagaatcgctgaggaagtacggggagacggtggagaaatgcctcgcggagtacggcgtcgaacggcctacgatgggagatgtcctgtggaacctggagttcgtgctccagctgcaggaggcaggcccggacatgtccaacattgatagcatgaatcagatctctgaactcccttcaaatgcccagaggataagctccctggagatcagcactgcagatgaaagccgaacggccatggactactctcagatgtcaaccagtaatgccttctcacagctgatcaacacagaagggaggtga
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| Protein seq | MDSTFRKLKLVLALVGIITWIIGTCNAKFTPADNYLVNCGSTVDATVGQRVFVADNSQSIVLTTPQSQSIAARTTLNSVSGFDNAELFQTARIFTAPSSYSFKMRSSGRHFVRLYFFPFLYQSYDLASSKFKVSTEDVVLIDNFPQPSNSISVVMEYSLNITRDRLILTFVPEGNSTSFVNAIEVVSVPDDLITDSAQLLGVGQYLGLAAQPLQTFHRINVGGPKVTAENDTLARTWFADQSFFRNPTVAQAVTYQERLNYKDGSATQDDAPDSVYNTARRLVGQRNASSTPNMTWEFNVDGRSSYLIRFHFCDIVSKAAFQLYFDVYVYNFSAAKDLDLSASEFGTLAAPFYMDIVLPSSDPSGNLTVSIGPSSLPNATPDGILNGLEIMKMNFSSGSVYVVKPPSAAKQQLPIILGSVLGGIGAVIIVVVLCVVFRRKKKMKKPQTPLTSRPSSSWTPLSLNALSFLSTGTRTTSRTTYTSGTNSDTSYRIPFVVLQEATNHFDEQMVIGVGGFGKVYKAVLQDSTKVAVKRGNQKSHQGIREFRTEIELLSGLRHRHLVSLIGYCDERNEMILVYEYMEKGTLKGHLYGGDQPPLSWKKRLEICIGAARGLHYLHTGFAKSIIHRDVKSANILLDENLMAKVSDFGLSKTGPEFDQTHVSTAVKGSFGYLDPEYYRRQKLTDKSDVYSFGVVLLEVICARPVIDPTLPRDMINLAEWAIKWQKRGELDQIIDKRIAGTIRPESLRKYGETVEKCLAEYGVERPTMGDVLWNLEFVLQLQEAGPDMSNIDSMNQISELPSNAQRISSLEISTADESRTAMDYSQMSTSNAFSQLINTEGR |
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| Function | Receptor-like protein kinase HERK 1 [UniProtKB/Swiss-Prot:Q9LX66] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0004450 | OsLima_05g0004450.01 | Chr05 | 3629406 | 3632199 | + | NAM | ||
| CDS seq | atggatagtacctttagaaagcttaaattagttctagctcttgttgggatcatcacctggattattggtacctgcaatgcaaaattcacccctgcagacaactatcttgtgaactgtggttccacggtcgatgcaactgttggtcagagggtctttgtagctgacaattcgcagtctattgtgttgacaacccctcagagtcagagcattgctgctagaaccacgctgaattcggtgtcgggtttcgacaatgccgagctgtttcaaaccgcaaggatattcactgcgccgtcgtcctactcattcaagatgagaagcagtggccggcattttgtccggctctacttcttccctttcttgtatcagagctatgatcttgcaagctcaaaattcaaggtgtcaacagaagatgttgttctcattgataatttccctcagccaagcaattccatctcagtggtcatggagtattctctgaacattacaagagacaggctaattctaacttttgtgccggaagggaacagtacatccttcgtcaacgccattgaagttgtgtcggttcctgatgatctaattactgattcggcgcaacttctgggtgttgggcagtatcttggactggcagcacagccattgcaaacattccacaggatcaatgtgggcgggccgaaggtcacagctgaaaatgatactctggctcgaacatggtttgctgatcagagcttcttcagaaatcccactgtcgctcaagcagttacttaccaagaaagactgaattacaaagatggatcagcaacgcaggatgatgcaccagacagtgtctacaatactgcgaggcggttggttgggcagaggaacgccagctccacgccaaacatgacatgggaattcaatgttgatggccgttcaagctacctgattcggttccatttctgcgacatagtgagcaaggcagcatttcagctctactttgatgtctatgtttataacttttcagcagcaaaagatcttgatctctccgccagtgaatttggtacactggcggcgccattctacatggatattgtcttaccatcaagtgacccgtcaggtaacctcactgtcagcataggtccttccagcttgcctaatgcaacacctgatggaatcctgaatggcctggagatcatgaagatgaacttcagcagtggatctgtttacgttgtcaaaccgccatcagcagcgaaacaacaattgcccatcattttaggatctgttcttggaggcattggtgctgttatcattgtcgttgttctctgtgttgttttcagaagaaagaagaagatgaagaaaccgcagacgccattaacaagtcggccttcaagttcttggacaccactctctctcaatgctctcagcttccttagtacaggtacccggacaaccagccggaccacttatacatctggaactaacagcgacacaagctaccggattccttttgttgttctgcaagaggcaacaaaccacttcgatgagcagatggttattggagtcggaggatttgggaaggtctacaaagcagttctgcaggacagcaccaaagttgcagtgaagcgtggcaaccagaagtctcaccaagggattagggaattccggacggagatcgagctgctgtctgggctgcgacaccgccatctcgtgtcgctcattggttactgcgatgagcgcaatgagatgatcttggtgtatgagtacatggagaaaggcactctgaagggtcacctgtatggcggtgaccagcctccactcagctggaagaaaaggctggaaatctgcattggtgctgcaagagggctccactacctccacaccggtttcgcaaaatcgatcatccaccgtgacgtcaagtcagcaaacattctcctcgatgaaaatctcatggccaaggtctctgattttggcctctcaaaaacagggcctgaatttgatcagacacatgttagcaccgccgtgaaagggagtttcggctatcttgatcctgagtactacaggaggcagaagctgaccgacaagtcagacgtgtactcgttcggtgtggtcttgctagaggtgatctgcgcaaggccagtcatcgacccgacgcttccaagagacatgatcaaccttgcagagtgggctattaagtggcaaaagagaggagagcttgatcagatcatcgacaagaggatcgccgggacaatcaggccagaatcgctgaggaagtacggggagacggtggagaaatgcctcgcggagtacggcgtcgaacggcctacgatgggagatgtcctgtggaacctggagttcgtgctccagctgcaggaggcaggcccggacatgtccaacattgatagcatgaatcagatctctgaactcccttcaaatgcccagaggataagctccctggagatcagcactgcagatgaaagccgaacggccatggactactctcagatgtcaaccagtaatgccttctcacagctgatcaacacagaagggaggtga
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| Protein seq | MDSTFRKLKLVLALVGIITWIIGTCNAKFTPADNYLVNCGSTVDATVGQRVFVADNSQSIVLTTPQSQSIAARTTLNSVSGFDNAELFQTARIFTAPSSYSFKMRSSGRHFVRLYFFPFLYQSYDLASSKFKVSTEDVVLIDNFPQPSNSISVVMEYSLNITRDRLILTFVPEGNSTSFVNAIEVVSVPDDLITDSAQLLGVGQYLGLAAQPLQTFHRINVGGPKVTAENDTLARTWFADQSFFRNPTVAQAVTYQERLNYKDGSATQDDAPDSVYNTARRLVGQRNASSTPNMTWEFNVDGRSSYLIRFHFCDIVSKAAFQLYFDVYVYNFSAAKDLDLSASEFGTLAAPFYMDIVLPSSDPSGNLTVSIGPSSLPNATPDGILNGLEIMKMNFSSGSVYVVKPPSAAKQQLPIILGSVLGGIGAVIIVVVLCVVFRRKKKMKKPQTPLTSRPSSSWTPLSLNALSFLSTGTRTTSRTTYTSGTNSDTSYRIPFVVLQEATNHFDEQMVIGVGGFGKVYKAVLQDSTKVAVKRGNQKSHQGIREFRTEIELLSGLRHRHLVSLIGYCDERNEMILVYEYMEKGTLKGHLYGGDQPPLSWKKRLEICIGAARGLHYLHTGFAKSIIHRDVKSANILLDENLMAKVSDFGLSKTGPEFDQTHVSTAVKGSFGYLDPEYYRRQKLTDKSDVYSFGVVLLEVICARPVIDPTLPRDMINLAEWAIKWQKRGELDQIIDKRIAGTIRPESLRKYGETVEKCLAEYGVERPTMGDVLWNLEFVLQLQEAGPDMSNIDSMNQISELPSNAQRISSLEISTADESRTAMDYSQMSTSNAFSQLINTEGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.058614 | 0.260936 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0162500 | RBH | 0.0 | 0.423432 | 1.014768 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g06990 | RBH | 0.0 | 0.182052 | 0.550605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0162500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004440 | RBH | 0.000000 | 16.219303 | 2.881301 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004490 | RBH | 0.0 | 2.672623 | 0.913126 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004380 | RBH | 0.0 | 9.305847 | 2.774604 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004470 | RBH | 0.025524 | 0.195040 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004540 | RBH | 0.0 | 3.733174 | 8.017390 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0052600 | RBH | 2.682742 | 33.129713 | 7.555244 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004320 | RBH | 0.0 | 0.515419 | 0.360443 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0053200 | RBH | 4.665336 | 45.8021775 | 6.5478765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003710 | SBH | 0.857571 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004370 | RBH | 0.000000 | 7.518694 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004460 | RBH | 0.0 | 9.002318 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004480 | RBH | 0.065972 | 1.195917 | 0.623141 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004540 | RBH | 0.0 | 3.156943 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004420 | RBH | 0.0 | 1.114173 | 2.345328 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004630 | RBH | 0.0 | 24.061474 | 3.964432 |
