Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0002620 | OGI:05006260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:2140234-2143949 | ||||||||
| Gene Symbol | CIPK17, OsCIPK17, OsSnRK3.14, SnRK3.14 | ||||||||||
| DNA seq | caaggcaatttatttctttcttttatttcatctttcctttctttctctttacaacggtggctagtttttgaaccactcggttctgtacactgtatcatatactactatgatcctaccctctcaagtcttatctcttctccaaatgcctgaccaaatatgttcctacacatcctcttgcctaagatcatcctacagcattgcagttttgcagaacacagcattcgtcacaaagcgaacagcggcgtccctgcattgctgttctgaagatcatcctcaagcgacgccgttgcaaagatctgctccgtgttgcgcgcccccaggtcactggagatcctctcacagagctgcaaaaacatttcaagaagaaattggtaatctttctccagtttcagtcatactgtcatagtcagtggcaactgcaaatctgcaattgtttagctgctgttacctgtctatacaatgcagggtctccatgggacttcctaagttctacaacatttacagaagggccaagctcaaaaacctgacataaaaaaaaatggcaccacgcttctgttagccgaccagcagttgcatcatgtttttgcgttaaaatgttttggttctttgtgttttacctcggcggacaccataaatgactcggggttctttgatccattgcaattgcgcattaatttgagctgacaaataatgttcaaaccatttttagtttcttgaaacgtttaaggtagtgttagtatgtcctgtaaggctgtaatatgacgaagacgatgaaaggcttgtacagaccttgctgtgccccctctgaacttggaatcccaactccatcgctgagctttcaatcttgtcgaaggcatccttgggtggatgcgttgatgtgaatctaatcctcctttgggacacttcctgcaacaagtcaggcaatgaattattcattccattttcccgtgaaaatgtaatcacaagtggcttaagacaagttcatccagggtgtttatcaacagtttcctgggaaataagttatttcacttcaactgcatatgatattttgagaagatagaaacattctatttcaggttatttcagccttggtaaggagatggaagtgctggaaggaaatttctgaaagggcactgtacaaacctcatcctcgaaaaaccctgaaagatcaagggatgatgccattccaatcaactggaaagcgttgatctgatgagaattcttatctccaggctcatcattgatttgcttcagaaaagaaaagaaatcaaaacttaccagtcagtagttgcaaacaccaaaattaaatttactgttcaggacatagataatccccaatgaagtcatgaagtctactaatctctCcctacgtctttggcaggaagacgtgccccaaactgtacatcttcatcgtcatcgtcatatggaagaacaggaatatagtccttctgaaaccattcgtgtgatttgatccctgccatgtcgatcctcttcatcggattgggttcaagaatcctctgaagaagattttgtgcactgggtgaaagccactttgggatctgagtgtcacccttgaaaatctaatcaaaccgaataaacatagtcactaaaaatgatcagagaatacaataacagaataatattacttcagtttgatataaatcagtaccttctgatacagaacaacaatatttcggtcatcgaacggaagatatcctataagcattacataaaggattactccgcaagaccagatatctgacaaggatccatcatatcctttattctgcagaacctgcaagcatttagcacaaggatgagcaagctttacaagataataattcagttgaactgaaaggaactttcacatacctcaggagcaatatagttggggctaccacaggtagtatgcagcaatccatcattctgaaaagtaccaaactttacaattcagtgaaaaaaaatatttaagAaaaacattttgtatagctgaagtcgacaaatcataccccgaggtgttgaggtaaagcactaagaccaaaatcagagatcttgatgttgcctttttggtccacaagaacgttctcaggctgtaccaatggaataattttaacacgaattatgttacagattcatgaagccacaccgaccgatgttgctaactaagtgcagcacagatgataattcataaaatttttagcagtttgccctaaaacaaatcttccattaccttgaggtctctgtggtagactcccctatcatggcaatagctaacaccatcaattaactgctgaaaaagcctccttccttctttctctgatagttttccctttactgcctatattatttttaatcgcaaagaattaacagcttcaaatgttagaacacaccatagtagctggcatgaaaatttttgcagcgaggaaatagcgtaaaagatcattgaaacaagggcttacaattctctcaaacagttcacctccattgacaaactcaagcaccatgtaaatcttagttttgctagcagcaacctgaatcaagagtcgaagaacaagattaagacgtgatcatgtgatgtgacattactctcttaagttagttgcttacatgaaactgaaccatagaattttctctcgttttcgtagtgaaagAaaaaaaaaacgtgacataaattcgacaacgacggtgctacccactagtcggcaatggccatgcgtgggcacatttgggatcacgagcacccgccggagatggagaagacggtgacgttgacggcgaacaattccggcgagaggcatccggttctcaccagacaaagtctccgtggtccagcAaaaataattgggggacccaccagacgacggtgcgccgcgtgggcccacactgccaggtggaccaacgccacgtggcacgagcctagtctacgtgcggctgcgggatcggctgctccacgtggcatttcacacggcggcgccgtcgacggcgagaaaccggcggccgcggcggcggaggcgaaccacgcaatttgcaagctaaataaatcactaataaataaataaaaaaaaagaaaactcgtgttttcgatcgaatctccggtgcgaactcaaactaatttcgacgaatccattatctaaataaactaatttggacgaattaggcggtttattaaggaagcgaagcgagagaaggatgaaatggaattttgacctcgtggaggcggacgacgtgggggtgcctgagcagcttgagcgtggcgatctcgcggcgaatctggtcgccggcgcggagggagacgacgcggccgcggtcgaggatcttgacggcgaagtggccgccggtggcgaggtggcgcgcgtacttcaccttgccgaagttgccctCcccgagcgtcctccccatctcgtacccgcccagcagcgcctccctccctcccttcaccattgcaaactccaccaaaagatcgattcttcctcctctttctcgagacgatttgttggaaggggagagaaatataatggaagacggattggcaagaaaaaatggagggtatttattgataaagatcccacttgttgtctctaagactctactatcttcgatgcttttgcatctctgacagtgatctctactccctgatgagtttaggattgaatttgaagggggaagaaggtgtctggagtagtacgagatgacaagtgggcagcaaggtttacagc
More
|
||||||||||
| CDS seq | atggtgaagggagggagggaggcgctgctgggcgggtacgagatggggaggacgctcgggGagggcaacttcggcaaggtgaagtacgcgcgccacctcgccaccggcggccacttcgccgtcaagatcctcgaccgcggccgcgtcgtctccctccgcgccggcgaccagattcgccgcgagatcgccacgctcaagctgctcaggcacccccacgtcgtccgcctccacgaggttgctgctagcaaaactaagatttacatggtgcttgagtttgtcaatggaggtgaactgtttgagagaattgcagtaaagggaaaactatcagagaaagaaggaaggaggctttttcagcagttaattgatggtgttagctattgccatgataggggagtctaccacagagacctcaagcctgagaacgttcttgtggaccaaaaaggcaacatcaagatctctgattttggtcttagtgctttacctcaacacctcgggaatgatggattgctgcatactacctgtggtagccccaactatattgctcctgaggttctgcagaataaaggatatgatggatccttgtcagatatctggtcttgcggagtaatcctttatgtaatgcttataggatatcttccgttcgatgaccgaaatattgttgttctgtatcagaagattttcaagggtgacactcagatcccaaagtggctttcacccagtgcacaaaatcttcttcagaggattcttgaacccaatccgatgaagaggatcgacatggcagggatcaaatcacacgaatggtttcagaaggactatattcctgttcttccatatgacgatgacgatgaagatgtacagtttggggcacgtcttcctgccaaagaccaaatcaatgatgagcctggagataagaattctcatcagatcaacgctttccagttgattggaatggcatcatcccttgatctttcagggtttttcgaggatgaggaagtgtcccaaaggaggattagattcacatcaacgcatccacccaaggatgccttcgacaagattgaaagctcagcgatggagttgggattccaagttcagagggggcacagcaagctcaaattaatgcgcaattgcaatggatcaaagaaccccgagtcatttatggtgtccgccgaggtttttgagcttggcccttctgtaaatgttgtagaacttaggaagtcccatggagaccctgcattgtatagacagctctgtgagaggatctccagtgacctgggggcgcgcaacacggagcagatctttgcaacggcgtcgcttgaggatgatcttcagaacagcaatgcagggacgccgctgttcgctttgtga
More
|
||||||||||
| Protein seq | MVKGGREALLGGYEMGRTLGEGNFGKVKYARHLATGGHFAVKILDRGRVVSLRAGDQIRREIATLKLLRHPHVVRLHEVAASKTKIYMVLEFVNGGELFERIAVKGKLSEKEGRRLFQQLIDGVSYCHDRGVYHRDLKPENVLVDQKGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNKGYDGSLSDIWSCGVILYVMLIGYLPFDDRNIVVLYQKIFKGDTQIPKWLSPSAQNLLQRILEPNPMKRIDMAGIKSHEWFQKDYIPVLPYDDDDEDVQFGARLPAKDQINDEPGDKNSHQINAFQLIGMASSLDLSGFFEDEEVSQRRIRFTSTHPPKDAFDKIESSAMELGFQVQRGHSKLKLMRNCNGSKNPESFMVSAEVFELGPSVNVVELRKSHGDPALYRQLCERISSDLGARNTEQIFATASLEDDLQNSNAGTPLFAL |
||||||||||
| Function | CBL-interacting protein kinase 17 [UniProtKB/Swiss-Prot:Q75L42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0002620 | OsLima_05g0002620.01 | Chr05 | 2140234 | 2143949 | - | NAM | ||
| CDS seq | atggtgaagggagggagggaggcgctgctgggcgggtacgagatggggaggacgctcgggGagggcaacttcggcaaggtgaagtacgcgcgccacctcgccaccggcggccacttcgccgtcaagatcctcgaccgcggccgcgtcgtctccctccgcgccggcgaccagattcgccgcgagatcgccacgctcaagctgctcaggcacccccacgtcgtccgcctccacgaggttgctgctagcaaaactaagatttacatggtgcttgagtttgtcaatggaggtgaactgtttgagagaattgcagtaaagggaaaactatcagagaaagaaggaaggaggctttttcagcagttaattgatggtgttagctattgccatgataggggagtctaccacagagacctcaagcctgagaacgttcttgtggaccaaaaaggcaacatcaagatctctgattttggtcttagtgctttacctcaacacctcgggaatgatggattgctgcatactacctgtggtagccccaactatattgctcctgaggttctgcagaataaaggatatgatggatccttgtcagatatctggtcttgcggagtaatcctttatgtaatgcttataggatatcttccgttcgatgaccgaaatattgttgttctgtatcagaagattttcaagggtgacactcagatcccaaagtggctttcacccagtgcacaaaatcttcttcagaggattcttgaacccaatccgatgaagaggatcgacatggcagggatcaaatcacacgaatggtttcagaaggactatattcctgttcttccatatgacgatgacgatgaagatgtacagtttggggcacgtcttcctgccaaagaccaaatcaatgatgagcctggagataagaattctcatcagatcaacgctttccagttgattggaatggcatcatcccttgatctttcagggtttttcgaggatgaggaagtgtcccaaaggaggattagattcacatcaacgcatccacccaaggatgccttcgacaagattgaaagctcagcgatggagttgggattccaagttcagagggggcacagcaagctcaaattaatgcgcaattgcaatggatcaaagaaccccgagtcatttatggtgtccgccgaggtttttgagcttggcccttctgtaaatgttgtagaacttaggaagtcccatggagaccctgcattgtatagacagctctgtgagaggatctccagtgacctgggggcgcgcaacacggagcagatctttgcaacggcgtcgcttgaggatgatcttcagaacagcaatgcagggacgccgctgttcgctttgtga
More
|
|||||||
| Protein seq | MVKGGREALLGGYEMGRTLGEGNFGKVKYARHLATGGHFAVKILDRGRVVSLRAGDQIRREIATLKLLRHPHVVRLHEVAASKTKIYMVLEFVNGGELFERIAVKGKLSEKEGRRLFQQLIDGVSYCHDRGVYHRDLKPENVLVDQKGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNKGYDGSLSDIWSCGVILYVMLIGYLPFDDRNIVVLYQKIFKGDTQIPKWLSPSAQNLLQRILEPNPMKRIDMAGIKSHEWFQKDYIPVLPYDDDDEDVQFGARLPAKDQINDEPGDKNSHQINAFQLIGMASSLDLSGFFEDEEVSQRRIRFTSTHPPKDAFDKIESSAMELGFQVQRGHSKLKLMRNCNGSKNPESFMVSAEVFELGPSVNVVELRKSHGDPALYRQLCERISSDLGARNTEQIFATASLEDDLQNSNAGTPLFAL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.033755 | 0.085723 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0136200 | RBH | 0.146106 | 0.149836 | 3.339209 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04550 | RBH | 0.088432 | 0.090197 | 0.769338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0136200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002610 | RBH | 0.0 | 7.020340 | 1.527617 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002640 | RBH | 0.176634 | 1.399652 | 1.259706 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002640 | RBH | 0.504438 | 4.012227 | 3.150752 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002620 | RBH | 0.000000 | 0.491075 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002680 | RBH | 0.000000 | 0.000000 | 1.751176 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0032400 | RBH | 1.77058 | 11.949773 | 11.1850795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002560 | RBH | 0.000000 | 0.095556 | 0.719923 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0031500 | RBH | 10.0051315 | 22.9248295 | 2.502979 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012810 | RBH | 7.367108 | 0.557754 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002540 | RBH | 0.000000 | 0.796214 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002650 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002650 | RBH | 0.274437 | 0.143122 | 0.431589 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002680 | RBH | 0.141566 | 1.313358 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002520 | RBH | 0.000000 | 2.092611 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002700 | RBH | 0.253302 | 13.894542 | 4.396507 |
