Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0002450 | OGI:05005780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:1930981-1935010 | ||||||||
| Gene Symbol | OsSK13/OsGSK6, OsSK13, OsGSK6, SK13, GSK6 | ||||||||||
| DNA seq | gctttctttcacaagcttctcagaagattactgatatgtaagaacatgtagcagcaagtacaattaaatgaatagcctctcgatccatgtccaaatatttggaccgaacgaacattgccatacaaagtgtgcaacatccttccttgcatgttgctacaatcttgacaaaccgatcgaattcagttttcaacctgattttacactcttcttcatcaactttacagaaccgtggatgaTtttttggttacaccggcagcagcaaagtgggaggggggaaaagaatacgcggcgtcagaatctcggacaaaaaaatgtagttccacttccatatgcaccagctttcccaaatggctgcacacagggttcatctctgctttctaatggaggacggtgaagaaattctgaactagttttcatgctgacctcagaaatcaccatcctacaaacgtgcattgctttcgagcatgttcggggataagcttcaccaggaattccattggcatacccttcagttctgttcaaatcggccagattagtagatatttataagttgatcggtggttcagaaattttcgtctacgcatgtcatatgtcagccggtgttgcaagcttaccatggggcttgaagttgaagagaggaggaaggaaacggccgttcggtaagcgggtgtttggatcacggagttcatcgaagaagggatggatcaatgcttccgactgtaatggcaaataaagaaatgcacaatcagtaactactagtacttggcaaggcagtgcatgtttgtatgatgaagtaattagaaaaatgtaacacaacagtgatgccaagaactAaaactttctcgAaaaaatggtgttggctcaaatagtgcaacgacaacactcacagcagtggaccggaggtatggtgaatactgcaaaagcctggagacgagatcgactgcttcagcaggcattcttttatggaagatctggtggtaaaaaaaaaaaaaaggaaagctacattaggtttcaaccctaaaatAAaaaataaacagtccaacataagattattttcttctaccttgtgccatgggtgagctttgatttgcggaaatttaaactcggtgtaatttgggttcatgcacttaatctcctctcgtgtaggggtacccagaacctgagagaatagtcagttaagtaggaggtaaacaacaaaaagggagtgatttcgatggaagcaagatataatttaccttgatgatttcaacaagctgatcaacgccactgtcgccagggaatagaggcttttaaaacAaaaaaaggataaagcttaggcagacagttgtaatgagctggatggtccaaaagcctcatgtaaataatgtgatctcttacctgccccaggaggagttcagcaagcacacaaccggcagaccaaacatcaatcgctgttgtgtattcagtagcaccaaatatgagctctggagctctgtagtaccttgaacagatgtaagaaatatttggttctccttttacctataataatagaacaaaagattaggtacagcagacaatggcaatgtttgtgtgagtatctggtaatgagtgatcataccaagactttcgcgctgccgaagtcacataatttcagctgatgagtatgtgggttcacctggAagtaataatCttttagcaaccatctgactaaacaaaacttagtacttgactaactccacaaagcttcaataagtggaaaacagattataactaaatgcaagtatgtaacataccagaAGattttgtggcttgatatccctgtgacacacgccaatggtgttgtgaatgtacgccaaagctctgcatatctgtcaattataataggttttccatgttatactcaatgcataattgtgctaggatagattagcagatctaggtgtgtaacgttacctgatacatgtatagttttgcatatatcaatggcatgcgttggttcatcttgttgtaatgtttaattacacggtgagcagtctctggcacatactcaagcaccaaattgaggtaaagctcctccttctcagtctttgagaaaaaacaatgctttagtgacaccacatttgggtggtcaagaactcgcattgtttgcagctcacggttcttatatctcttgtcttgaagaaccttctttatagccacagtctcaccggtttccaggcacttggcctatacaagatcattcaagaaatgaagggttcatcaatcgccaccagaacacacaaattaacacactgaacaagtgcaacataaatcgatctgtctaaagacaaacctggaaaacagttccaaaggatccatgacctacgacacgctcagccatgtagctaatggtctgcaatgtagatagataattcagtgaacaaaaacttattgtgttcccaggcaacactaaatggacacaaaaggatcagcataatatcacttgtgcttgttttgtgaacagtacctgtttagcctgtccatttcttccatcaatgcttgtcacaataatatgaccaggttctgtcccattgccattgacaactatgtcgtcaatgtcctgcgacgtttgtgaatcaaatcagcaactgacaatacagcaaaaggcaactatgatccaccactcttaggcataataccttattatcatcccttatactcatattgctcatctcattcggaagtcggtcggcatcgccacttgtacttgtttcgttctgaaaccccaaggaagaacgcaccacacctaccgaggccatactgttgaaaggcacacaaggctaatgttcaagaggctttcctaaagatgagttgtagttgatccacctgcaaacaacagcataataatggtaagtcaaagtcacaacagtgtttttacttaagaaagatgtgatgagattaggtgccagaagcacattcacagacagtttgtgttggcaattggcaggtaggcttgaaggtacaggaaaagAaaaaaaaaagaagaaatgaaactttgggaatccatgatggatgccgagttgttgtcaaaactggagtgttacttttctagctcaatcgaaacacagaatctgaagatattagaatgctaatctgtaccaattaCcccccgtttatcatgacatattcaaccacgatcattgggagattatcccgaggcggtagctttcaagaatcaaccagttcatccacccatgcttgctatccataacagccaagagaagggaacatttcaccgatccagagaccaccaaattttgcatcaaccaaactaaaccatatttcccccatcaactcatctccctccaatcacacgcatcatccaaatagaagaaagccaccagaatcaccgatcaaaatgcaaaatcagcaggacgaacaagtatccgatccgacctcggaaaccgccaccatcttccccacccccaagAaaatcacaagaacaaacgaacacacacaccaaaaaaaaaaagaaaaaaaaaaggaaaaaaaaagaaccagctttcccttccaccccttgaaaaagaaaaatccaaccaagccacgatccaagagcaaccacggccgcgtcaaccgtcgaatcgggcaagaacaagcagagagaagaaccacgggatccaagaaacagaggcgagagggatttaccacgggatcaggcggggcggagggtcgccggagagaggacggagcggggctggcggcacgatctggcgctcgctggattgccccacctccctcgctggctcgctctccctcctcagctccggcgcggaatgcgggggaggattcggagggagagaggaaggaggagcttcgctgccttctataatacacaggaggaagaagagattgcgacacagaaaaaataaaaaaaagggaaatttttatgtttactcttagtattaattaattaattaattaattattaattgttttaagtaattaacttgtctgtttgaccgttgaaaggttccggtcccgtggcgccaatctcatctcgtgtggggcccat
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| CDS seq | atggcctcggtaggtgtggtgcgttcttccttggggtttcagaacgaaacaagtacaagtggcgatgccgaccgacttccgaatgagatgagcaatatgagtataagggatgataataaggacattgacgacatagttgtcaatggcaatgggacagaacctggtcatattattgtgacaagcattgatggaagaaatggacaggctaaacagaccattagctacatggctgagcgtgtcgtaggtcatggatcctttggaactgttttccaggccaagtgcctggaaaccggtgagactgtggctataaagaaggttcttcaagacaagagatataagaaccgtgagctgcaaacaatgcgagttcttgaccacccaaatgtggtgtcactaaagcattgttttttctcaaagactgagaaggaggagctttacctcaatttggtgcttgagtatgtgccagagactgctcaccgtgtaattaaacattacaacaagatgaaccaacgcatgccattgatatatgcaaaactatacatgtatcagatatgcagagctttggcgtacattcacaacaccattggcgtgtgtcacagggatatcaagccacaaaatCTtctggtgaacccacatactcatcagctgaaattatgtgacttcggcagcgcgaaagtcttggtaaaaggagaaccaaatatttcttacatctgttcaaggtactacagagctccagagctcatatttggtgctactgaatacacaacagcgattgatgtttggtctgccggttgtgtgcttgctgaactcctcctggggcagcctctattccctggcgacagtggcgttgatcagcttgttgaaatcatcaaggttctgggtacccctacacgagaggagattaagtgcatgaacccaaattacaccgagtttaaatttccgcaaatcaaagctcacccatggcacaagatcttccataaaagaatgcctgctgaagcagtcgatctcgtctccaggcttttgcagtattcaccatacctccggtccactgcttcggaagcattgatccatcccttcttcgatgaactccgtgatccaaacacccgcttaccgaacggccgtttccttcctcctctcttcaacttcaagccccatgaactgaagggtatgccaatggaattcctggtgaagcttatccccgaacatgctcgaaagcaatgcacgtttgtaggatggtga
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| Protein seq | MASVGVVRSSLGFQNETSTSGDADRLPNEMSNMSIRDDNKDIDDIVVNGNGTEPGHIIVTSIDGRNGQAKQTISYMAERVVGHGSFGTVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRVLDHPNVVSLKHCFFSKTEKEELYLNLVLEYVPETAHRVIKHYNKMNQRMPLIYAKLYMYQICRALAYIHNTIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGDSGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPAEAVDLVSRLLQYSPYLRSTASEALIHPFFDELRDPNTRLPNGRFLPPLFNFKPHELKGMPMEFLVKLIPEHARKQCTFVGW |
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| Function | Glycogen synthase kinase-3 homolog MsK-3 [UniProtKB/Swiss-Prot:P51139] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0002450 | OsLima_05g0002450.02 | Chr05 | 1930981 | 1935010 | - | NAM | ||
| CDS seq | atgggccccacacgagatgagattggcgccacgggaccggaacctttcaacgaaggcagcgaagctcctccttcctctctccctccgaatcctcccccgcattccgcgccggagctgaggagggagagcgagccagcgagggaggtggggcaatccagcgagcgccagatcgtgccgccagccccgctccgtcctctctccggcgaccctccgccccgcctgatcccgtggtggatcaactacaactcatctttaggaaagcctcttgaacattag
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| Protein seq | MGPTRDEIGATGPEPFNEGSEAPPSSLPPNPPPHSAPELRRESEPAREVGQSSERQIVPPAPLRPLSGDPPPRLIPWWINYNSSLGKPLEH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0002450 | OsLima_05g0002450.01 | Chr05 | 1930981 | 1935010 | - | NAM | ||
| CDS seq | atgggccccacacgagatgagattggcgccacgggaccggaacctttcaacgaaggcagcgaagctcctccttcctctctccctccgaatcctcccccgcattccgcgccggagctgaggagggagagcgagccagcgagggaggtggggcaatccagcgagcgccagatcgtgccgccagccccgctccgtcctctctccggcgaccctccgccccgcctgatcccgtggtggatcaactacaactcatctttaggaaagcctcttgaacattag
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| Protein seq | MGPTRDEIGATGPEPFNEGSEAPPSSLPPNPPPHSAPELRRESEPAREVGQSSERQIVPPAPLRPLSGDPPPRLIPWWINYNSSLGKPLEH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0002450 | OsLima_05g0002450.03 | Chr05 | 1930981 | 1934834 | - | NAM | ||
| CDS seq | atggcctcggtaggtgtggtgcgttcttccttggggtttcagaacgaaacaagtacaagtggcgatgccgaccgacttccgaatgagatgagcaatatgagtataagggatgataataaggacattgacgacatagttgtcaatggcaatgggacagaacctggtcatattattgtgacaagcattgatggaagaaatggacaggctaaacagaccattagctacatggctgagcgtgtcgtaggtcatggatcctttggaactgttttccaggccaagtgcctggaaaccggtgagactgtggctataaagaaggttcttcaagacaagagatataagaaccgtgagctgcaaacaatgcgagttcttgaccacccaaatgtggtgtcactaaagcattgttttttctcaaagactgagaaggaggagctttacctcaatttggtgcttgagtatgtgccagagactgctcaccgtgtaattaaacattacaacaagatgaaccaacgcatgccattgatatatgcaaaactatacatgtatcagatatgcagagctttggcgtacattcacaacaccattggcgtgtgtcacagggatatcaagccacaaaatCTtctggtgaacccacatactcatcagctgaaattatgtgacttcggcagcgcgaaagtcttggtaaaaggagaaccaaatatttcttacatctgttcaaggtactacagagctccagagctcatatttggtgctactgaatacacaacagcgattgatgtttggtctgccggttgtgtgcttgctgaactcctcctggggcagcctctattccctggcgacagtggcgttgatcagcttgttgaaatcatcaaggttctgggtacccctacacgagaggagattaagtgcatgaacccaaattacaccgagtttaaatttccgcaaatcaaagctcacccatggcacaagatcttccataaaagaatgcctgctgaagcagtcgatctcgtctccaggcttttgcagtattcaccatacctccggtccactgcttcggaagcattgatccatcccttcttcgatgaactccgtgatccaaacacccgcttaccgaacggccgtttccttcctcctctcttcaacttcaagccccatgaactgaagggtatgccaatggaattcctggtgaagcttatccccgaacatgctcgaaagcaatgcacgtttgtaggatggtga
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| Protein seq | MASVGVVRSSLGFQNETSTSGDADRLPNEMSNMSIRDDNKDIDDIVVNGNGTEPGHIIVTSIDGRNGQAKQTISYMAERVVGHGSFGTVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRVLDHPNVVSLKHCFFSKTEKEELYLNLVLEYVPETAHRVIKHYNKMNQRMPLIYAKLYMYQICRALAYIHNTIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGDSGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPAEAVDLVSRLLQYSPYLRSTASEALIHPFFDELRDPNTRLPNGRFLPPLFNFKPHELKGMPMEFLVKLIPEHARKQCTFVGW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 1931595 | 1931951 | - | OsLima_05g0002450.01 | OsLima_05g0002450.03,OsLima_05g0002450.01,OsLima_05g0002450.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.598657 | 0.604422 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0134000 | RBH | 1.926373 | 3.505306 | 15.716063 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04340 | RBH | 1.277043 | 2.308127 | 3.960536 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0134000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002460 | RBH | 0.853395 | 25.969322 | 20.171368 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002480 | RBH | 0.709008 | 9.639521 | 14.484487 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002490 | RBH | 3.010771 | 34.114986 | 42.112541 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002420 | RBH | 0.472499 | 1.303627 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002510 | RBH | 8.066276 | 50.782570 | 38.757027 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0030300 | RBH | 17.691696 | 40.8672615 | 84.671375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002450 | RBH | 0.159130 | 3.119072 | 8.118196 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0029600 | RBH | 29.4519815 | 44.2053295 | 92.0466765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013010 | RBH | 0.973843 | 0.339632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002370 | RBH | 1.233792 | 26.016270 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002480 | RBH | 2.207811 | 47.059200 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002490 | RBH | 0.828198 | 3.257697 | 3.125196 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002510 | RBH | 0.552347 | 14.587378 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002350 | RBH | 0.588334 | 11.625595 | 8.679477 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002540 | RBH | 1.075757 | 50.477421 | 33.951378 |
