Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0000420 | OGI:05000760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:292349-295822 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcatcaagcatcatgatgttcagttccaacatcatgcatcatatatattaaatttaggcttataaactgttttaacaaaccgatgatatcacaaactgtggcaagtaacgaacactttgtgcacgcatgatgatgttgtctaatgctaaagtatcatccaatccaatgcttttttttttccagccttgtgacgaaatgaatcctccaacatttggctagtgccatgacaggaacggcgtcttgttgagttcatgatgagcagcagctactgctgctgttctgctgttgaatgggctggcctctcatgtgaatatggacagttggtttcctctccacggcaggttgggttgccatcctgcagaggttgcacggcaaggaaattcactagtcagtcaggtagacatagacccctcgtttgttgttgaaaggcacggaaaggaactaggagtacaaaaggtacataaactgcatcatcggcatttattattcaacatgaagagggtcctattattttcagcttatgaattatggattatcgtgggcacgtttcccaagttcctaaatggttccatttctttaaaaactttcttcaccagcatttcttagaatttttttaaatcaacatttcaactttctaatattaaatttattcatttgcaccctcaaataattgtcataaactttcatcagctataaAGaagcaatattcagaatggtcatagcctaggaaatcaaatttcatggtcgagtgcaaaactggaatttcctttcaaaggatggaaaggttcatgacaaaatttgagaaagaagttcaaaattaagctagggaaaaatatgggcctccaaggctccaagggtgcaacaaatggattactcctaccttttcttgatgtctgacgacatggttaagaaagcttcctccacattgatggattcctttgcacttgtctcaagaaaagaaatccctaatgactctgcaaaagcctgcaattaaacattaacatttcaatcagttgataccatgttcagtctttagtcctgaagagcagagactgaaaatgcattcaggaagatatataccaagaacatacaaagatataggtctacAaaagaaggtacatgctacatagtggtttctggaaatattttcacaaccagggatacaatatgacaatatcccttcaataagctcaacggatactacattgatctatgtatgctaacaacagacatctctgataagttgatgacagcaacaatcagtgaatatgacattctaagtgtagcatgactgcagaaatttcctatgatttctttaaaactataaattaccttggcttcttctgtatcaacaaccttactgtcaaccaaatcacacttgttcccaactagaagcttgcatacactgtcactggcatacctatcaatctcactcaaccactgcttcacattattgaagctttccatgtctgtcacatcataaacaatctgaaaaagtattgtaagatgtattaactccatgcgtggaagtctagatcttgaaaagtagaacacaacatataatgcaaaaagaaagaaggaaaaattcaattcaataacaaccaatgtaaactgtaaacctattcagtcaatcgtaaatcattcagtactacatcgcggaagaaaaacagtacagctaaaaaaatcagtttaagattttattatcttataaactgcaaaaactcaataggacttacaatgattccatgagctccccggtaataactgcttgttattgtcctgaacctttcctgacctgctgtgtcccactgaaaaagaaacaacatcattataataatttgagggctgaacaaataaaggtatatttcataaagcaatgtgtgtcctgatacatcaatactcaccaaacaattaaacattaagaccataatttccaattgtttatgtatatatgtctacttggcaagcatgtgtaatctaaatctgatgtgaactgatgcagtaaatcagctgcttggcaagtacattgtcccaactctaagcttttctttagggtcccaactataagctctccctgactataactctaagctatgtggtcttaattagctagatcttgaaaacctctcctatcaactgtaccagttccctccaaaaacaaagttgctgaacagtccagttcctcaaattagtttaGgggtaattgtcaatgcatgcctgcatggtaattgctccatttcctgtccattctcccttcaacaataataggaggaaaatggcaggtcaacaactcagaaagcatggacaagttgtttcattcaagaatattctgcacagatggcaaaattcttaaattttacacccatcaccatggttctatcattgtattcctctaagattacaattttggattattggaactagcaccacgttttagaatatccagagagtataaacaaagggagtaagaactgaaaataccggtccggcgaaaaggaactgaaaaccaacttatgactcaagttttgacaggataatgctaagggaggatacaagccaagcatccctaatccatagtagattgagttccaaagtttctagaactaggcattatcatcaaaagtcatgcatcccaggcatgaattaatcgtgcaattatctaaaaaatggattggtctgaactcgcataagagaattgtctcgatgaggaatgaacttacaatctgtagcttcactgtcttcccatcgagttcaatggttcggattttctgaaaaggtgacatattcactaacaaattaacgaaatttgattcagttagatgatagcaactgcagaattcaatggttcatcaatagcaagagaagaggaagatttgtactgacgaaatcaacaccgatggtactgatgtaagtgtcgatgtacgaatcgtcctgtatgaatcaaacgaaccggaacttgtcaggacgagaagttaattaaacaccgaactgtgctactctattgaaataaagaagagaagtttccgagcgaaattaagatggaggctttcttacagcaaatcggaggaggaggcaggacttgccgacggaggagtcgccgatgaggagcagcttgaacaggtaatcgctgcatcagaaaacgcaaacaccattaatcgcagtttcacaaagaggggaaattggagacgacggccgcggcggcggagagtcgggaacttactactcgatgctcatggcgtcctcttgggttgttgggtctcgacggatttggaggacgaaaaactaactagaattctaaaaaggcgaggttttttagcgaaggggaggaagagacaggtggaaggaggatcacaagaagaaggcaaccttggaaactaaccaaggaagcaaagcgaacaaaaaggttgcttcttttcttggtgcggtcgcatccgttttatcaggccataaacccaagtcaggaactcccaactc
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| CDS seq | atgagcatcgagtacgattacctgttcaagctgctcctcatcggcgactcctccgtcggcaagtcctgcctcctcctccgatttgctgacgattcgtacatcgacacttacatcagtaccatcggtgttgatttcaaaatccgaaccattgaactcgatgggaagacagtgaagctacagatttgggacacagcaggtcaggaaaggttcaggacaataacaagcagttattaccggggagctcatggaatcattattgtttatgatgtgacagacatggaaagcttcaataatgtgaagcagtggttgagtgagattgataggtatgccagtgacagtgtatgcaagcttctagttgggaacaagtgtgatttggttgacagtaaggttgttgatacagaagaagccaaggcttttgcagagtcattagggatttcttttcttgagacaagtgcaaaggaatccatcaatgtggaggaagctttcttaaccatgtcgtcagacatcaagaaaaggatggcaacccaacctgccgtggagaggaaaccaactgtccatattcacatgagaggccagcccattcaacagcagaacagcagcagtagctgctgctcatcatga
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| Protein seq | MSIEYDYLFKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYASDSVCKLLVGNKCDLVDSKVVDTEEAKAFAESLGISFLETSAKESINVEEAFLTMSSDIKKRMATQPAVERKPTVHIHMRGQPIQQQNSSSSCCSS |
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| Function | GTP-binding protein YPTM1 [UniProtKB/Swiss-Prot:P16976] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0000420 | OsLima_05g0000420.01 | Chr05 | 292349 | 295822 | - | NAM | ||
| CDS seq | atgagcatcgagtacgattacctgttcaagctgctcctcatcggcgactcctccgtcggcaagtcctgcctcctcctccgatttgctgacgattcgtacatcgacacttacatcagtaccatcggtgttgatttcaaaatccgaaccattgaactcgatgggaagacagtgaagctacagatttgggacacagcaggtcaggaaaggttcaggacaataacaagcagttattaccggggagctcatggaatcattattgtttatgatgtgacagacatggaaagcttcaataatgtgaagcagtggttgagtgagattgataggtatgccagtgacagtgtatgcaagcttctagttgggaacaagtgtgatttggttgacagtaaggttgttgatacagaagaagccaaggcttttgcagagtcattagggatttcttttcttgagacaagtgcaaaggaatccatcaatgtggaggaagctttcttaaccatgtcgtcagacatcaagaaaaggatggcaacccaacctgccgtggagaggaaaccaactgtccatattcacatgagaggccagcccattcaacagcagaacagcagcagtagctgctgctcatcatga
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| Protein seq | MSIEYDYLFKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYASDSVCKLLVGNKCDLVDSKVVDTEEAKAFAESLGISFLETSAKESINVEEAFLTMSSDIKKRMATQPAVERKPTVHIHMRGQPIQQQNSSSSCCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.148775 | 0.185294 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0105200 | RBH | 0.610359 | 0.0 | 0.765370 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01490 | RBH | 0.678531 | 0.000000 | 0.773088 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0105200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000400 | RBH | 0.767587 | 22.883612 | 7.439165 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000390 | RBH | 0.000000 | 6.359884 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000420 | RBH | 0.000000 | 21.960411 | 7.315178 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000400 | RBH | 0.191849 | 0.265768 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000400 | RBH | 9.761972 | 5.881858 | 8.508000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0004300 | RBH | 3.0873385 | 7.05641 | 5.032204 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000410 | RBH | 0.067293 | 0.289526 | 0.921899 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0004700 | RBH | 5.777766 | 12.986025 | 8.4959515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020750 | SBH | 1.378454 | 2.208411 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000370 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000380 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000420 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000420 | RBH | 0.274368 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000380 | RBH | 0.278042 | 0.801286 | 1.257543 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000410 | RBH | 0.000000 | 16.102465 | 3.954881 |
