Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0030450 | OGI:04101170 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:35902650-35908023 | ||||||||
| Gene Symbol | DLN127, OsDLN127 | ||||||||||
| DNA seq | gctgttgcaatctctgatgtggactattatttggaaaaaaaaagagttactaaataataatccatagtcttgtacttatatctatgaagttaaaagtgtGgggcaacacattctccaataacaaaaatgcattgccttgtaatgaggctttcagatgatggtctcaagacatgaagctgccattccacatcaggttttcttagtcagcaggctgatagcgaacccgcattcttcgctgttgttgagatcatttttgcagctgcagtccacaataggcatgatgacattcggcttaatggccttctccccacgaacaaccttcaaaagagccagcacagtagaggcataaggcaacatatatggaaatatcagcaatacaacttcaggaaaatatctatacatttcttggattttctcataaagattagccatatgtagaaaccagaaatccaatagattatgggggtgacaaaaggaattcgggttacgatcgacgtactaatttctcagactccgagcttttgtagatgatgaatatgtcccctgtctggagaccatgctgcttcacaaagccacctaaagagagcaattcatcagctccagtacaaactaagaaaaatccaaaagtatatgtttcaatgtttaaacgtacccgtgctttccaagacatacattctgctcttgttgttgggccagaacctgaaaggtatctcctatgagtaatatgtagcggattacaagccatatatgtttgtgtttctcgcatgtgacccaaataattacgaaaaattttgaaaaaaaaagtgacaacgcagatgattgtatcacctattgcttgtttgtaaaggtcaaatttttatctacagagagagaaacagattaacaaagtcaactaaaaatgtgattgcactttccatagtctgatttgctgtactgtttctccatgtgtagatcaaattgcatatctgtgcaccgatagacaacaccattatatattctattctatgtttaagattatttataactatttggattgcatgctgaaatgaggccacatgcacttgataatgtaaaatactttctcaagataggattgaattagataatactacctccgttttttaacagatgacgccgttgactttttctcacatgtttgaccattcgtcttattcgaaaaatttacgtaattataatttattttgttatgagttgtttaattactcatagtactttaagtgtgatttatatcttatacatttgcataaaatttttgaataagacgaatggtcaCATGTGAGAAAAAGTCAACGGTGGCATCTATTAAAAAACGGAGGGAGTAATAGGCAGATATACCAACTCTCTAACACTGTACCACATTACATAATATTCGAACTTGATCTGGTGCTGCACACAACTCTGCTAGACTAGTAATATGATATTATGATAAGATTACCTGTACTTAAAATTCCAAGTAGTTTCAAGCTTGAAGTCATCCATTTTCAGCATCACACCTTCCCTTTGATGCAATGCTGGAAGATGAGCCTCTGCATCCCTCTACAAAATTTGAAGATAATAAAATTACACTCGACTCTCAAGTCTCAAGACTCGTAACTAAATATATTGCACCGTAGTTATGTGGATCATGCTAGAACTGTATTTGTTGTAGATATataatatattaatgtgagaatatacaacattttacctttggcatcacaattcttccaatattaccaacatcactatttgtcaactccttgcgcaagataacacggtattctctacagttgaatctctgctagaaaattcagagttagttcagtttgaagttaatgtcccttccaaagtgggtgTgggagaagtcctctgttctattatgatagaagcaaaatttacatatacagagcaaggctctcacaagagcagtctaattaacaagatacatgcagaacaaattgattgaagtcaatgtaaactgcagtcaacaatgattgtataggtggttcagatctgactactaaactatggtactaatgattgcagttagttggaaaattgcggaatagttgccattatcctaattaaaaataataatgaaattgttcctgcaacttttaatctatcaatggaacaattaagttatcaagttacaaaatgcattcatttatgtaccaaatagagaatagtagtattcaggatatatggatgccatcatcaccaaggcatcatgttacttacaatagtcgaatttgcactgttatgactcatgcttgaaggctcactagccggagtttgatttagttcatcaTttttttcactctctgtatcacttcttcttaaaacaattggttgatcctgtagaaatctcatgtcaggactgctcatgtgaacccagaatatatcaacatgctctagaagagtcttacttttatatctgatttcttggctttcttagcgtctgtcggtccatttgaaatttgagctgaagagaaactgcgggatgatgaagacactggtggaaagggtgaaggagcatgtacaaatgattgatccaccctgaagctagtagaaacggtgaagaaacctgcacaataagatgctcagaggtgaggaaatgcataagtagtagtaacactgacatccatatagttgcacacttggatgaaatgcattgtgaaataatcaattcatggtggactaatcaatgcattgccctctgaaatctactcttaaatcttccaaaggaaataaccctttatgttaggtggacggccatccacccccccccccccccccccaacaacattgcaggcggccatttgggaggaaaattttggccctcctgcttagtgaaatactgaaatgggccccgtctgcgaaaatcatttttctagtagtgaattaatctaaatagggctactagtaaaggagataaaccttttacaaccactaagtactatgttcatcaaaggccatgcatgcatgtatataaccttggtctgtgtcatgattgttgatgtggaatggagtagcatggggatcctcaattgcagtagggtggtaactagtgtagacagggttcctcggcatgttattgctagcccatgcattgaaggagtatggcgtcagattctgataaagaacatttctattggaagcagtctggccataagacatgaatggcggcccattgcacattggcctcaaatcctgaaaattgctaggaagatgcggagctgcaacattattggagggaactcggtcttggaagttttctgaagaaaaatcaaacaaaactgatgAaataacatataaggacacaagacgataaggaattaaagaataagcaggaatagtaacactgaccagagcaagagatgcaagatggtatatatatgctgtacataattgctaTCtatatatgtcgtcactgaccataagaaatgcaagatgatgtataacatacatgaattacattgaagatcctagttaccatgttgttgcagacttgcagtggatctcaaactgtagaatgatttttatgctcacaagaacatgcgtgattctaatgagacagaaaccctacctgacatgcaaggaacagtggcaagggaagagagacaccggatcttatatgtaggtagcaggaaccatgAaaaaacataggccccacatgcacaataaaccctagactgacctagacgaagccctatggggaaaatatcttcgtgctgaattcaacaagtgcagatgatcgtggtgcaacaagatgtatatggcggttaggagaagactaaccttgagatatctgcaattggcggtggtggtgctgcagcgggagcatggcggatgttggcaccatggtgtaccggggcacgtaggagcatggcgccaccggcattgtcgacgacgggtggtggattaggccagtggggtactgatgatgcacaacattctcactcctaacaaggggtgacggcacggcctcaaggatcctatggtacctgttgtattggccgCcccctgtgaagtcatcgtggccttctctgcccctgtcatcgccaccGCCAgaggaagtggagcctctcgtgtcagccatgcgtgtgcacgaagcacacaacgtccccttgtgcacaagaagaggcggcggccgtggtcgtgggcttgaaggggtaggtgcccctCccactctctctctctcgccaaaaaaaaatctcctccaggttcactttggggaagttttgtaggggagcatatgcctaaaaaggaatcttctcccaaaagggagctcgcctcgtcttcacactgataaaaataaggcaaggcgagtgAaaaataaaccaattatcctttttgagaaacaaataattaggtgacaaactaggtctacatttctaaatattaacacaaaaaCccttagtataaacatctaaataataacaattactacatccgtcccaaaataagtgcagcaatgaaaatccgtgtctaacgtttgaccgtccgtcttatttgaaaattttatgaaaaaattaaaaaaaattagtcacacataaagtactattcatgttttatcatctaataacaataaaaatagtaatcataaaatttttttaaataaaacgaatggtcaaacattggaggtgaatagtgcaaaattgcacttatattgggacggaggaagtatcaatgaacacttaaagcccttagtataaacatccaaattaccgatgattacatcattccctaatttatttcaaacatatcaccAataattatgttgaactagcaaatcaccgtagtttgtatgattgtatccttaatttatctaataattccttgatggcttgccgtaagcccgtaaccattgttagtctctaaggtttcagttggagttctaagaatacaataaaactattagatgagataattttcagccatataatagggcataccactttctccttagacacttgttccctgatctcactTTCtttcctgtttatcttcgcgcaacaataccaaccaaactcaggctttctgaaatctgaagaaaacaatcgccgttaatataatcacagtcacagagaacgcagcaaatcctactactgttctacactgattaaaatataagaaagaaatggagagaaagtatatagagcattgccttcccctgccgcctgcgccgcctggccggatgccggacacggtggtggctataccgtgatggccggccggcgtgagcgtctcggcgccgacgcggcgcccggcgtccggcgtcggagtcggcgctgcggatggcggcttgtggcgatcgcttcacttgtcgtctccactgtcgcgtggggggaatggggaatagggagcagcg
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| CDS seq | atggctgacacgagaggctccacttcctcTGGCggtggcgatgacaggggcagagaaggccacgatgacttcacaggggGcggccaatacaacaggtaccataggatccttgaggccgtgccgtcaccccttgttaggagtgagaatgttgtgcatcatcagtaccccactggcctaatccaccacccgtcgtcgacaatgccggtggcgccatgctcctacgtgccccggtacaccatggtgccaacatccgccatgctcccgctgcagcaccaccaccgccaattgcagatatctcaagaaaacttccaagaccgagttccctccaataatgttgcagctccgcatcttcctagcaattttcaggatttgaggccaatgtgcaatgggccgccattcatgtcttatggccagactgcttccaatagaaatgttctttatcagaatctgacgccatactccttcaatgcatgggctagcaataacatgccgaggaaccctgtctacactagttaccaccctactgcaattgaggatccccatgctactccattccacatcaacaatcatgacacagaccaaggtttcttcaccgtttctactagcttcagggtggatcaatcatttgtacatgctccttcaccctttccaccagtgtcttcatcatcccgcagtttctcttcagctcaaatttcaaatggaccgacagacgctaagaaagccaagaaatcagatataaaagatcaaccaattgttttaagaagaagtgatacagagagtgaaaaaaAtgatgaactaaatcaaactccggctagtgagccttcaagcatgagtcataacagtgcaaattcgactattagattcaactgtagagaataccgtgttatcttgcgcaaggagttgacaaatagtgatgttggtaatattggaagaattgtgatgccaaagAGGGATGCAGAGGCTCATCTTCCAGCATTGCATCAAAGGGAAGGTGTGATGCTGAAAATGGATGACTTCAAGCTTGAAACTACTTGGAATTTTAAGTACAGgttctggcccaacaacaagagcagaatgtatgtcttggaaagcacgggtggctttgtgaagcagcatggtctccagacaggggacatattcatcatctacaaaagctcggagtctgagaaattagttgttcgtggggagaaggccattaagccgaatgtcatcatgcctattgtggactgcagctgcaaaaatgatctcaacaacagcgaagaatgcgggttcgctatcagcctgctgactaagaaaacctga
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| Protein seq | MADTRGSTSSGGGDDRGREGHDDFTGGGQYNRYHRILEAVPSPLVRSENVVHHQYPTGLIHHPSSTMPVAPCSYVPRYTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNFQDLRPMCNGPPFMSYGQTASNRNVLYQNLTPYSFNAWASNNMPRNPVYTSYHPTAIEDPHATPFHINNHDTDQGFFTVSTSFRVDQSFVHAPSPFPPVSSSSRSFSSAQISNGPTDAKKAKKSDIKDQPIVLRRSDTESEKNDELNQTPASEPSSMSHNSANSTIRFNCREYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNNKSRMYVLESTGGFVKQHGLQTGDIFIIYKSSESEKLVVRGEKAIKPNVIMPIVDCSCKNDLNNSEECGFAISLLTKKT |
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| Function | B3 domain-containing protein Os04g0676600 [UniProtKB/Swiss-Prot:Q7XKC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0030450 | OsLima_04g0030450.01 | Chr04 | 35902650 | 35908023 | - | NAM | ||
| CDS seq | atggctgacacgagaggctccacttcctcTGGCggtggcgatgacaggggcagagaaggccacgatgacttcacaggggGcggccaatacaacaggtaccataggatccttgaggccgtgccgtcaccccttgttaggagtgagaatgttgtgcatcatcagtaccccactggcctaatccaccacccgtcgtcgacaatgccggtggcgccatgctcctacgtgccccggtacaccatggtgccaacatccgccatgctcccgctgcagcaccaccaccgccaattgcagatatctcaagaaaacttccaagaccgagttccctccaataatgttgcagctccgcatcttcctagcaattttcaggatttgaggccaatgtgcaatgggccgccattcatgtcttatggccagactgcttccaatagaaatgttctttatcagaatctgacgccatactccttcaatgcatgggctagcaataacatgccgaggaaccctgtctacactagttaccaccctactgcaattgaggatccccatgctactccattccacatcaacaatcatgacacagaccaaggtttcttcaccgtttctactagcttcagggtggatcaatcatttgtacatgctccttcaccctttccaccagtgtcttcatcatcccgcagtttctcttcagctcaaatttcaaatggaccgacagacgctaagaaagccaagaaatcagatataaaagatcaaccaattgttttaagaagaagtgatacagagagtgaaaaaaAtgatgaactaaatcaaactccggctagtgagccttcaagcatgagtcataacagtgcaaattcgactattagattcaactgtagagaataccgtgttatcttgcgcaaggagttgacaaatagtgatgttggtaatattggaagaattgtgatgccaaagAGGGATGCAGAGGCTCATCTTCCAGCATTGCATCAAAGGGAAGGTGTGATGCTGAAAATGGATGACTTCAAGCTTGAAACTACTTGGAATTTTAAGTACAGgttctggcccaacaacaagagcagaatgtatgtcttggaaagcacgggtggctttgtgaagcagcatggtctccagacaggggacatattcatcatctacaaaagctcggagtctgagaaattagttgttcgtggggagaaggccattaagccgaatgtcatcatgcctattgtggactgcagctgcaaaaatgatctcaacaacagcgaagaatgcgggttcgctatcagcctgctgactaagaaaacctga
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| Protein seq | MADTRGSTSSGGGDDRGREGHDDFTGGGQYNRYHRILEAVPSPLVRSENVVHHQYPTGLIHHPSSTMPVAPCSYVPRYTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNFQDLRPMCNGPPFMSYGQTASNRNVLYQNLTPYSFNAWASNNMPRNPVYTSYHPTAIEDPHATPFHINNHDTDQGFFTVSTSFRVDQSFVHAPSPFPPVSSSSRSFSSAQISNGPTDAKKAKKSDIKDQPIVLRRSDTESEKNDELNQTPASEPSSMSHNSANSTIRFNCREYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNNKSRMYVLESTGGFVKQHGLQTGDIFIIYKSSESEKLVVRGEKAIKPNVIMPIVDCSCKNDLNNSEECGFAISLLTKKT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0030450 | OsLima_04g0030450.02 | Chr04 | 35904102 | 35908023 | - | NAM | ||
| CDS seq | atggctgacacgagaggctccacttcctcTGGCggtggcgatgacaggggcagagaaggccacgatgacttcacaggggGcggccaatacaacaggtaccataggatccttgaggccgtgccgtcaccccttgttaggagtgagaatgttgtgcatcatcagtaccccactggcctaatccaccacccgtcgtcgacaatgccggtggcgccatgctcctacgtgccccggtacaccatggtgccaacatccgccatgctcccgctgcagcaccaccaccgccaattgcagatatctcaagaaaacttccaagaccgagttccctccaataatgttgcagctccgcatcttcctagcaattttcaggatttgaggccaatgtgcaatgggccgccattcatgtcttatggccagactgcttccaatagaaatgttctttatcagaatctgacgccatactccttcaatgcatgggctagcaataacatgccgaggaaccctgtctacactagttaccaccctactgcaattgaggatccccatgctactccattccacatcaacaatcatgacacagaccaaggtttcttcaccgtttctactagcttcagggtggatcaatcatttgtacatgctccttcaccctttccaccagtgtcttcatcatcccgcagtttctcttcagctcaaatttcaaatggaccgacagacgctaagaaagccaagaaatcagatataaaagatcaaccaattgttttaagaagaagtgatacagagagtgaaaaaaAtgatgaactaaatcaaactccggctagtgagccttcaagcatgagtcataacagtgcaaattcgactattagattcaactgtagagaataccgtgttatcttgcgcaaggagttgacaaatagtgatgttggtaatattggaagaattgtgatgccaaagAGGGATGCAGAGGCTCATCTTCCAGCATTGCATCAAAGGGAAGGTGTGATGCTGAAAATGGATGACTTCAAGCTTGAAACTACTTGGAATTTTAAGTACAGGTAA
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| Protein seq | MADTRGSTSSGGGDDRGREGHDDFTGGGQYNRYHRILEAVPSPLVRSENVVHHQYPTGLIHHPSSTMPVAPCSYVPRYTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNFQDLRPMCNGPPFMSYGQTASNRNVLYQNLTPYSFNAWASNNMPRNPVYTSYHPTAIEDPHATPFHINNHDTDQGFFTVSTSFRVDQSFVHAPSPFPPVSSSSRSFSSAQISNGPTDAKKAKKSDIKDQPIVLRRSDTESEKNDELNQTPASEPSSMSHNSANSTIRFNCREYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0676600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0676600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030940 | RBH | 0.0 | 0.0 | 2.421262 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031720 | RBH | 0.0 | 0.0 | 0.262617 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031290 | RBH | 0.0 | 0.0 | 1.236730 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031120 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031360 | RBH | 0.0 | 0.0 | 2.436662 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0544700 | SBH | 0.0026825 | 0.005921 | 0.0544145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030000 | RBH | 0.0 | 0.0 | 0.123678 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0550800 | SBH | 0 | 0 | 0.2880385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030410 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030960 | RBH | 0.0 | 0.0 | 0.091220 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030970 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030470 | RBH | 0.0 | 0.000000 | 0.711821 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030170 | RBH | 0.0 | 0.0 | 0.000000 |
