Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0029370 | OGI:04099180 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:35161146-35164132 | ||||||||
| Gene Symbol | F3H1, OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H | ||||||||||
| DNA seq | gacaaagggaggcgggaggtctgtccctagctattacttagccgatatagagaaaagacaactctgaaaatgtaaagaaggtctcatgtaaagagtccttacttcgtatactactatattagtagtattacgactgcttcgattttcgacggaagatacacattatttcagtcttcaagcattcgtgctgcaaatgcatagacagcatagttatacttatatctagtccacagtactccacacatcgatcgcgctgcgtccatggcgatctaggcaagaatctcgtcgagagacttgggcttctgtgctgccaactccgcggcgacctgcgtcggcggcggcggcggcagcgccgcctgctgcagctgccgctgctccttggccttcttcttgagcttggcgagctcgaggtcgcgtgccatcttgcgccggtacatctccgcgaacgtgatcggctcctctagtatgggctcctccccgtcgcgcaccgccagcgggtacaccctcgcgtccggcgccgggttctggaacgtcgcgatcgacagccggcagcagtcggagttcaccaccgcctggtgatccgcgttcttgaacctcccattgctcagatactgcaagttcacattgcctaagagatgcatgatctaaaacaaaatcaccaaggatacagtgtggccgtagtactcacgtgagcatggtcaccgaggttgacgacgaaggagccggggatgggctggacggtgatccacgtcttgccgccgtcgcgggtggcctggaggccgccgacgaggtcctggaggaggagcgtgatggtgccggggtcggtgtggcgcttgaggccaagggtgaggtcgggctgggggcacttggggtagaagttgacgacaaccttctggtccatgtcgacgcaggcatcggccagcgcgttggtgtcgaggcccatggcctcggagagcacgcccagcagcttgcaggcgaggcccatgagccgctcgctgtactgctccaccactgcgcgccaccccgccggcttgtcgggccaccgcgagtagtcgcgggacttcaccgggtacgagaagtaggtcacgatctcccgccagtctttcaccgcttcaccctgcacgttacagtaaactctaaacgtgtaaaactgtaaattgaaactgacaaatatattggacgtgactacacagagaccgtatactgtattgttttaatgagagaCctttacgtctatacctaacaatgtatgcctttttttattcttataaatttttctcttaaattatttatccgatctataatccgattaaactattgtgttcgttgcaattaaatatttacaataaaaccttacataattataTtttttattaaaaaatatctatgaattacttttattaatatgtaagttacttttatcatatataaaaaatacttttgtgagttgtttgttttattaccaTttttaatcaattccataatgtatgctaattacatttaatttttagatagactcatgtttttaccccccacaacggatttacttctaatgtcgtgacaagttactttcgtttttgttttaagtttatatatatatatatatatatatatatatatatatatatatatatatatatatatattttaggctttatataatatttacttttatatGtctaaaaagtaatttgataaaatctaaaagtaatttagatatattataaaagtaatttgtatttttttatcAaaaatataatcatgtgagatattgttataaagatttaattgttatgaacacaacagtgtaatcggatcgtaaattcgatgagtaatctaagagaaaattttatttgaaacataggtgatagaaatatatttctctacttacttgttggactagtattactatagttaagtaaattcttccggtcaatgtcgtgtcgctggttaggacgaaatcgagatgctcttgagttagatttaccgaaatatatttaattgtttcaacgaagatgatagctacagaaacgttggtgcacagagaataggaagttatgcagctatagaaacggtggtaaacaattggaagtttgaaaggttaaggttcttggcctctcattggtcgtacgggtctgtccattcacAaagactgtacagaaacagtagaaatgagattaatttgaagtttagagtgcaacatgggatctgtcaatttgtttgttgaattgaagacagtaatctactcctattttctAaaaaaaaaaaaactcctgttgtcttcgtccttcatgactagttcgtctctccaaactgttcgtcggctaatgaagggaaatataacacaagaatattttaccagatctttttggagaattcaggattgtgtaaggattccattcgttttcttttcttttgaaaatatagcagccgaggccaatacgacagaccattggaattgcaacctagtcaacattggcataggaatatcttcggtgatcactgctctgacgaagcaacagagcagacatggtgatcgacatgtcgccgttcccgcgcgtgcgtcgacttcgagtgctctaggaacgtaacgacgtgaagtgacgtgacgtgacgtgacgtacctggaggtgactggagacgatgaatccgcccttcttgccgccggacatgtcgaaccggagcttgtcctccggcggcagcgcgaagaagtcgcgggcgaggcgcgccatgtcggcgacgagccccgcgtccacgccgtggtccaccacctggaagatgccccactcctcgcacgcgccggccacgcGggcacggatctccgcccgcgccgcttcgtcgatCccctggagcgagatcaccgggaccgcgtcgctgaactggttgtacgccaccctggggcgctcgtcctcgtcgcgcacgaacgacggccgcagcgtcgcctcgttcgacgccgtcgggaggaacgtcgtggccaccggcgccat
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| CDS seq | atggcgccggtggccacgacgttcctcccgacggcgtcgaacgaggcgacgctgcggccgtcgttcgtgcgcgacgaggacgagcgccccagggtggcgtacaaccagttcagcgacgcggtcccggtgatctcgctccagggGatcgacgaagcggcgcgggcggagatccgtgccCgcgtggccggcgcgtgcgaggagtggggcatcttccaggtggtggaccacggcgtggacgcggggctcgtcgccgacatggcgcgcctcgcccgcgacttcttcgcgctgccgccggaggacaagctccggttcgacatgtccggcggcaagaagggcggattcatcgtctccagtcacctccagggtgaagcggtgaaagactggcgggagatcgtgacctacttctcgtacccggtgaagtcccgcgactactcgcggtggcccgacaagccggcggggtggcgcgcagtggtggagcagtacagcgagcggctcatgggcctcgcctgcaagctgctgggcgtgctctccgaggccatgggcctcgacaccaacgcgctggccgatgcctgcgtcgacatggaccagaaggttgtcgtcaacttctaccccaagtgcccccagcccgacctcacccttggcctcaagcgccacaccgaccccggcaccatcacgctcctcctccaggacctcgtcggcggcctccaggccacccgcgacggcggcaagacgtggatcaccgtccagcccatccccggctccttcgtcgtcaacctcggtgaccatgctcactatctgagcaatgggaggttcaagaacgcggatcaccaggcggtggtgaactccgactgctgccggctgtcgatcgcgacgttccagaacccggcgccggacgcgagggtgtacccgctggcggtgcgcgacggggaggagcccatactagaggagccgatcacgttcgcggagatgtaccggcgcaagatggcacgcgacctcgagctcgccaagctcaagaagaaggccaaggagcagcggcagctgcagcaggcggcgctgccgccgccgccgccgacgcaggtcgccgcggagttggcagcacagaagcccaagtctctcgacgagattcttgcctag
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| Protein seq | MAPVATTFLPTASNEATLRPSFVRDEDERPRVAYNQFSDAVPVISLQGIDEAARAEIRARVAGACEEWGIFQVVDHGVDAGLVADMARLARDFFALPPEDKLRFDMSGGKKGGFIVSSHLQGEAVKDWREIVTYFSYPVKSRDYSRWPDKPAGWRAVVEQYSERLMGLACKLLGVLSEAMGLDTNALADACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDGGKTWITVQPIPGSFVVNLGDHAHYLSNGRFKNADHQAVVNSDCCRLSIATFQNPAPDARVYPLAVRDGEEPILEEPITFAEMYRRKMARDLELAKLKKKAKEQRQLQQAALPPPPPTQVAAELAAQKPKSLDEILA |
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| Function | Flavanone 3-dioxygenase 1 [UniProtKB/Swiss-Prot:Q7XM21] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0029370 | OsLima_04g0029370.01 | Chr04 | 35161146 | 35164132 | - | NAM | ||
| CDS seq | atggcgccggtggccacgacgttcctcccgacggcgtcgaacgaggcgacgctgcggccgtcgttcgtgcgcgacgaggacgagcgccccagggtggcgtacaaccagttcagcgacgcggtcccggtgatctcgctccagggGatcgacgaagcggcgcgggcggagatccgtgccCgcgtggccggcgcgtgcgaggagtggggcatcttccaggtggtggaccacggcgtggacgcggggctcgtcgccgacatggcgcgcctcgcccgcgacttcttcgcgctgccgccggaggacaagctccggttcgacatgtccggcggcaagaagggcggattcatcgtctccagtcacctccagggtgaagcggtgaaagactggcgggagatcgtgacctacttctcgtacccggtgaagtcccgcgactactcgcggtggcccgacaagccggcggggtggcgcgcagtggtggagcagtacagcgagcggctcatgggcctcgcctgcaagctgctgggcgtgctctccgaggccatgggcctcgacaccaacgcgctggccgatgcctgcgtcgacatggaccagaaggttgtcgtcaacttctaccccaagtgcccccagcccgacctcacccttggcctcaagcgccacaccgaccccggcaccatcacgctcctcctccaggacctcgtcggcggcctccaggccacccgcgacggcggcaagacgtggatcaccgtccagcccatccccggctccttcgtcgtcaacctcggtgaccatgctcactatctgagcaatgggaggttcaagaacgcggatcaccaggcggtggtgaactccgactgctgccggctgtcgatcgcgacgttccagaacccggcgccggacgcgagggtgtacccgctggcggtgcgcgacggggaggagcccatactagaggagccgatcacgttcgcggagatgtaccggcgcaagatggcacgcgacctcgagctcgccaagctcaagaagaaggccaaggagcagcggcagctgcagcaggcggcgctgccgccgccgccgccgacgcaggtcgccgcggagttggcagcacagaagcccaagtctctcgacgagattcttgcctag
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| Protein seq | MAPVATTFLPTASNEATLRPSFVRDEDERPRVAYNQFSDAVPVISLQGIDEAARAEIRARVAGACEEWGIFQVVDHGVDAGLVADMARLARDFFALPPEDKLRFDMSGGKKGGFIVSSHLQGEAVKDWREIVTYFSYPVKSRDYSRWPDKPAGWRAVVEQYSERLMGLACKLLGVLSEAMGLDTNALADACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDGGKTWITVQPIPGSFVVNLGDHAHYLSNGRFKNADHQAVVNSDCCRLSIATFQNPAPDARVYPLAVRDGEEPILEEPITFAEMYRRKMARDLELAKLKKKAKEQRQLQQAALPPPPPTQVAAELAAQKPKSLDEILA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0662600 | RBH | 0.543779 | 0.359577 | 1.289734 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g56700 | RBH | 0.441016 | 0.239260 | 0.328453 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0662600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029850 | RBH | 0.0 | 0.0 | 2.972104 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030620 | RBH | 0.0 | 0.0 | 0.227399 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030190 | RBH | 0.0 | 0.0 | 2.011438 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0030290 | RBH | 0.0 | 0.0 | 1.879064 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0532700 | RBH | 0.049623 | 0.1413005 | 0.008287 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0537300 | RBH | 0.9541425 | 0.2059185 | 0.0702355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0029710 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0029340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029880 | RBH | 0.0 | 0.0 | 1.139661 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G029330 | RBH | 0.0 | 0.0 | 0.197860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029100 | RBH | 0.0 | 0.0 | 0.000000 |
