Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0029230 | OGI:04014620 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:35073047-35073739 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaattcctactagctgaagtctcaccgggaacgttgccctgcttgctgattcccgatggtggagtggcaactgtcttgacagctgtaacaggtaggattttcttgcccgtggggttaccgagtggtgatttgtcaatgggcctccgggttggagcaatacaaggtgcattgctagaactgacaacagttgggcgacctggtgctgacaacacttgctgcgggtgctgacgaaggaccgtactgcctctttgtagctgtagcgagctgttgttttcctggcattgcttaCcctgctggcgttggtgttgaaggcttgaaacgtttgccggtggaacaatgcggcctctgacggtgcccttgacgatgatccgttgaggctgaggtcgcacattcaggtgtcgattggggtcgtgggcaatgctagtaacttgtgaatcacgacggactgcctttgctgctcttggaagagggcaatcactgaaatgatgtcctggcttacaacagttgcgacagaatcgacttgcttggtctcggggtgcagacttctgattatgcacttgggcagctgaaacgggaacaagcagaaacttatgaacatccttggtgacgttgcttcttccatggttggcttccactggagctggagttggaggaagagcagaaggattgtgaccgctgttgtcgattgtcat
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| CDS seq | atgacaatcgacaacagcggtcacaatccttctgctcttcctccaactccagctccagtggaagccaaccatggaagaagcaacgtcaccaaggatgttcataagtttctgcttgttcccgtttcagctgcccaagtgcataatcagaagtctgcaccccgagaccaagcaagtcgattctgtcgcaactgttgtaagccaggacatcatttcagtgattgccctcttccaagagcagcaaaggcagtccgtcgtgattcacaagttactagcattgcccacgaccccaatcgacacctgaatgtgcgacctcagcctcaacggatcatcgtcaagggcaccgtcagaggccgcattgttccaccggcaaacgtttcaagccttcaacaccaacgccagcaggGtaagcaatgccaggaaaacaacagctcgctacagctacaaagaggcagtacggtccttcgtcagcacccgcagcaagtgttgtcagcaccaggtcgcccaactgttgtcagttctagcaatgcaccttgtattgctccaacccggaggcccattgacaaatcaccactcggtaaccccacgggcaagaaaatcctacctgttacagctgtcaagacagttgccactccaccatcgggaatcagcaagcagggcaacgttcccggtgagacttcagctagtaggaattaa
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| Protein seq | MTIDNSGHNPSALPPTPAPVEANHGRSNVTKDVHKFLLVPVSAAQVHNQKSAPRDQASRFCRNCCKPGHHFSDCPLPRAAKAVRRDSQVTSIAHDPNRHLNVRPQPQRIIVKGTVRGRIVPPANVSSLQHQRQQGKQCQENNSSLQLQRGSTVLRQHPQQVLSAPGRPTVVSSSNAPCIAPTRRPIDKSPLGNPTGKKILPVTAVKTVATPPSGISKQGNVPGETSASRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0029230 | OsLima_04g0029230.01 | Chr04 | 35073047 | 35073739 | - | NAM | ||
| CDS seq | atgacaatcgacaacagcggtcacaatccttctgctcttcctccaactccagctccagtggaagccaaccatggaagaagcaacgtcaccaaggatgttcataagtttctgcttgttcccgtttcagctgcccaagtgcataatcagaagtctgcaccccgagaccaagcaagtcgattctgtcgcaactgttgtaagccaggacatcatttcagtgattgccctcttccaagagcagcaaaggcagtccgtcgtgattcacaagttactagcattgcccacgaccccaatcgacacctgaatgtgcgacctcagcctcaacggatcatcgtcaagggcaccgtcagaggccgcattgttccaccggcaaacgtttcaagccttcaacaccaacgccagcaggGtaagcaatgccaggaaaacaacagctcgctacagctacaaagaggcagtacggtccttcgtcagcacccgcagcaagtgttgtcagcaccaggtcgcccaactgttgtcagttctagcaatgcaccttgtattgctccaacccggaggcccattgacaaatcaccactcggtaaccccacgggcaagaaaatcctacctgttacagctgtcaagacagttgccactccaccatcgggaatcagcaagcagggcaacgttcccggtgagacttcagctagtaggaattaa
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| Protein seq | MTIDNSGHNPSALPPTPAPVEANHGRSNVTKDVHKFLLVPVSAAQVHNQKSAPRDQASRFCRNCCKPGHHFSDCPLPRAAKAVRRDSQVTSIAHDPNRHLNVRPQPQRIIVKGTVRGRIVPPANVSSLQHQRQQGKQCQENNSSLQLQRGSTVLRQHPQQVLSAPGRPTVVSSSNAPCIAPTRRPIDKSPLGNPTGKKILPVTAVKTVATPPSGISKQGNVPGETSASRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.119544 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60560 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034400 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033920 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010360 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033650 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005670 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0531400 | SBH | 0.048211 | 0 | 0.4520115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008970 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0094900 | SBH | 0 | 0.0062165 | 0.011218 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0000410 | SBH | 0.176546 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0054180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005700 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004780 | RBH | 0.0 | 0.0 | 0.0 |
