Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0028640 | OGI:04097810 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:34538542-34544156 | ||||||||
| Gene Symbol | LPA, OsSultr3;3, OsSul3;3, SULTR3;3 | ||||||||||
| DNA seq | gagaattactatatattctgtactgttggtgtgtttgccctcatgtagacaaatactgatgggtatgcacaaggtacatattctcagtacttctactgccaagtttgcatcacatagtctgaatacctcggaagattgggggtacaaacataaccgggaaatacgttgctggaggcacttctattgctgagagaacagggtggaaaatcttgcattgcaaacttagcagcgcagttagaataataatgaaaatgacaaccttagaatcagctctaaggcgctgtcatcttggaaaatgtagagagtgaagccactgcttccccagtggttaagtacagactatctgatttgaaatgaccatgagcatcattcgctcgttgtatcttctccatgacctctccagttggattcacaagtataagctgcaaaaataaaataaagggggtttactatgccacataacttttttttttttgccgggtcagccgaaggattcggtcgaccaaatttcattaagaagaagaagggggttttgtttgtgccccaaaactgtgtttatgttttaggaaattagagtatatacctctagtccatgcttctctgttgatttcttcaagtcgatgaggaacgatatgccacttgtatcaattgcagggacagctgagaaggatagttttatgatgtgttagtacagctgagaagcctttgtactagactctggtatgacctgatcttgcatttgaaaggaacatactaacaaaataaagtggatgaaagtttcattcgaagtaacaaacctgacagatccaaaattacgaaatggagttcactttgtttggttcctgcagaacttTCttcttctatccatcttttaatcctacaaacagaaacattgcagatatatttatccacttttcagaactttgatttctagtatttatttcttttcctagaagtgcgttttacctttcatttaggtagttggtgtttgcaaagtttataggagcctcaactgtcaggattaagaacccaggaactctttgagcgtccttgtactgatgaagatttcggtaaatatcagtgcctttgatgttcccttgaatcatcatctttggccttgtgatttgcaacagtaccctgaatattgatataccaacctgcaaaatttgagaattttaatcagtaagcaagtaaagctgcaacttactctatggaataattagctttgtcagttttattggttaccgctattgcaaggccttgttggactgagatgaagattacaccagcaaatgcacatagacacacaaggaaatccatcttgtccatcttccagatgttgtatacagcagggagatcaatgagcccaatcacagcagcaattatgattgctccaagaacaacattcggtgtgtacacaaacagtggcatgaggaacaacagtgtgaccatgacagtcagtgccatgatcacatttgacatggcagtcttgcaaccagcattgtggttcacagcagaacgagagaatgctcctgatggaaattaaataagagagaccatcatcctttctatcctttttttttttgaacggaaatcattctttctatccttgtgaatggtgatgaaactaggattaaagattggttcagggatgtacctgtagttacatagcatgatgtacatgagcccacaatgttcatcaatcctatggccatcatctctttgttaccatctacctggtagtccttgagtgaagcaaatgtcctaccaactgccactccttcctggtaaatagtgaaaagtgttatctgaatagtactgatactatggcacaagattctgaacatatatggggtgtcaagttcagatagcatcatgggatacattaattttcccatggaaaaacacagttaaaatggtaaaatttatgacagacataccgttagggagatgattccggtgacaaggccagtctttacagtgaggcccaaatattgaggatcaaagagtagtttatcccatgaagggcgattcaggccacatttgagctgcccaatctgcagggaaaagataggcatttttttattaatatgttacaactaagaaaatactaatgcagtaatttacagttgtttcaggtttcttactatgctaatgccatgtttctgagctttgaacaggaaaacaagcagggtagagacgataacacatgccaagggagcacaagctgaaacccagaaaagctttggccatttcatactctgcatacacagaagatagaatttgtgcaggagttagaattaacgagtgcaaaaataaaatgtacttgatttcagtttctgaaatgaacttttcactgatactaccaccatcctcattttcagaatattgaacactacatctgttttttgggagaataactccatggcccgagaaatatagcagaataaagaagtacagtctacagagcactgggcagatatcacatatcagagagacagagactgtaggttttcaggagagggatgttggatcgtgtaaatttcgtcccttttcctcccttatgtactacctgcaagatctgttcagttcttccagggtcaaaaccaatgtggccatgtggccttgagaggcccaacactattcctctggagctagtagcatagatcagtgtcggttgcattatttcgtcttgggctgctccatttgtagccttccagtcagaacctacggactgtttaatttgctagttacagccttacaggcttacattctttcaaaaaaaaccgtgcatgctgaggctgtggttagttccgcatcaaaattgaaagtttgactgaaattggaagtttgaacaaaaaagttggaagttggtgtgagtaggaaagttttgatgcgatgAaaaagttggaagtttgaataaaaagttgggaactaaacaatgcttgagttgattattgggggcatatgtatgtatgacgagtgctggccaccaccaccacctttttttaaagagtattttttacccaacctttatatccaaccggatatatgtagcttttttaaattgaaaacttaacacctcaaataacttaatctgaaattcgttcctatagaggattaaactcaggaccttagagtgctactaaggtcactgcaactactattcgtgccctttcgcaatagtgttctgcaaccaccaccacctaatactcactatcttcaacgtaactagcagtagtgttctctatcagcatggttgcaaggttcagaatactgaattgtgtgcatgcaccaacagaacaaatataattttttttttcaaaaaacagaacaaatgaaccatctgaaaaaggcgcagcccaaacgaacattaatactacatttcctttgaccaaataattaagtccagtaattttctaatgacttttgacatgttacttttactgcaacaagttgctggtaattactaaaatactgtacttagcttggactgtcaaaataaaaagactagctagacatggacccatacatgcatgcaacaacctgcagagagagatccatgtccgtgaccaaattgatcaagaaaggcacgcacatccttccaaaggatggatcgtcggccatatatatgcatcatttcatgcctgacttcacccggctgcatgattatcgatagcgacaacatatatacgaagctatatatatatcctgcgtactacagacgaagcgaatcgaaacatgtccaagagaaacgccaaaaccgccgctaatatagcccctgctatgatcagcaccacacatgcgtgtcatcagtggctagctagctgaacatttattctttttcgaaggaagaaatattgcaaaaacaaataacaataatagtaataatcagagaataacatgacgtagacatcagtcaacggcagtcaaaaggagtagacgcgtgtgtagtgtgatgtgatacgtaccacatgcctcgccgtgagcaggagcaccaggaagcacacggccatcaggatcgtctgccacgaccactgcacaaagcacggtgatcgatcgatcgattggtcagtcatacagtcacttagctcgccgtcgcggcggcggcggcggcgccggcgacgttatggatgcgcaattgcgacatcattagttacctccttggtgtggtggatgacggaggccatgacggggacgaggcccatctcggtggtgaagtggacgatgccgagcagcgccttgagctgctgcagcgacacgatgatcgccgcgccggccatgaacccgacaagcgtcgccttcgacaggaaatcgatgatgaaccccagcctgcatccatccatcaagatgagatcacatcatgcaaccatgcttcaattcggcatcaatgagcaggaacatgcagctagccatggatggatggatggatggatcaccggaggatgccgagggaggcctggacgaggccggcgaagaaggtggaggtgaaggcgagctggaggaagagcagcggctcggcggcggggctcaccgcctgccgcagcatggaccccattatcagCGAcgcgatcgacaccggccccaccgccaggtccctcgagctccccagcaccgcgtacaccatcggcggcacaaagctcgaatctacacaataaccatcaataattagttaattaccactagctaatcacctaaccattgtccatttactaataatcaaagatAtttgcatgcacacgcatgcatggaaggaaagaaagaaagcgtgtgaacaagctagcacgtacagaggccgatgatcggaggcaagctcgccagcttcgcgtagctaatgccctgcaAGatcgagttaatcagcaaccatgaatgctggttaaaaatcacgctgtacatgcaaagccagtaattaaggagtacagttggtgtgtatctgtacatgaccaggatgttaccaaaatgatcctacaaacttccAaaaaaaaaaaggaaaagaaaaatcaaagacaaacattcacacgcaaggatcgatatgatGcagctagctgtttcgtcgaacacatggagtgcatgcacaggaaacggaaaggaatcaaggcgaagattatatcattgcctgagggatggcgaggctggcgatggtgaggccggcgacgaggtcggatttgaagagggagaaggagtagctgggcacccagtcgaggatcgggaacaggtactgcaccgccatgacccacttggtcgtcagcggcttccccttgaacccgcggaacgggtcgtcggggaagaaggtctccttcaccctcgccttcagCTTGCTCGCCGTGCTCTGCGCCGGCGGCGCCGCCACCTTGTGTAGCACCGCCATCGCCGCGATCTCCGCCTCCGCCTCCCCCCCTCCAACTACTACGCCACCCTCGTTGCCGTTGTCATTGTAGCCATAAGCTCCACGCATCCCCACCATGTGAGAGAGATTTTTTGTTGTTGTTGTTGTTGCTATAGCAAAGCTAGGTTTTACTATCCAACAACTTAGTTGTTGTTGCAAGGAGAGCTAGGAGGGTTTGGGGTGTGTATATAAGAGGGCTAGTGTGAGCTTAGGGGGAAGGAGGAAAAGT
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| CDS seq | ATGGTGGGGATGCGTGGAGCTTATGGCTACAATGACAACGGCAACGAGGGTGGCGTAGTAGTTGGAGGGGGGGAGGCGGAGGCGGAGATCGCGGCGATGGCGGTGCTACACAAGGTGGCGGCGCCGCCGGCGCAGAGCACGGCGAGCAAGctgaaggcgagggtgaaggagaccttcttccccgacgacccgttccgcgggttcaaggggaagccgctgacgaccaagtgggtcatggcggtgcagtacctgttcccgatcctcgactgggtgcccagctactccttctccctcttcaaatccgacctcgtcgccggcctcaccatcgccagcctcgccatccctcagggcattagctacgcgaagctggcgagcttgcctccgatcatcggcctctattcgagctttgtgccgccgatggtgtacgcggtgctggggagctcgagggacctggcggtggggccggtgtcgatcgcgTCGctgataatggggtccatgctgcggcaggcggtgagccccgccgccgagccgctgctcttcctccagctcgccttcacctccaccttcttcgccggcctcgtccaggcctccctcggcatcctccggctggggttcatcatcgatttcctgtcgaaggcgacgcttgtcgggttcatggccggcgcggcgatcatcgtgtcgctgcagcagctcaaggcgctgctcggcatcgtccacttcaccaccgagatgggcctcgtccccgtcatggcctccgtcatccaccacaccaaggagtggtcgtggcagacgatcctgatggccgtgtgcttcctggtgctcctgctcacggcgaggcatgtgagtatgaaatggccaaagcttttctgggtttcagcttgtgctcccttggcatgtgttatcgtctctaccctgcttgttttcctgttcaaagctcagaaacatggcattagcataattgggcagctcaaatgtggcctgaatcgcccttcatgggataaactactctttgatcctcaatatttgggcctcactgtaaagactggccttgtcaccggaatcatctccctaacggaaggagtggcagttggtaggacatttgcttcactcaaggactaccaggtagatggtaacaaagagatgatggccataggattgatgaacattgtgggctcatgtacatcatgctatgtaactacaggagcattctctcgttctgctgtgaaccacaatgctggttgcaagactgccatgtcaaatgtgatcatggcactgactgtcatggtcacactgttgttcctcatgccactgtttgtgtacacaccgaatgttgttcttggagcaatcataattgctgctgtgattgggctcattgatctccctgctgtatacaacatctggaagatggacaagatggatttccttgtgtgtctatgtgcatttgctggtgtaatcttcatctcagtccaacaaggccttgcaatagcggttggtatatcaatattcagggtactgttgcaaatcacaaggccaaagatgatgattcaagggaacatcaaaggcactgatatttaccgaaatcttcatcagtacaaggacgctcaaagagttcctgggttcttaatcctgacagttgaggctcctataaactttgcaaacaccaactacctaaatgaaaggattaaaagatggatagaagaaGAaagttctgcaggaaccaaacaaagtgaactccatttcgtaattttggatctgtcagctgtccctgcaattgatacaagtggcatatcgttcctcatcgacttgaagaaatcaacagagaagcatggactagagcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatgatgctcatggtcatttcaaatcagatagtctgtacttaaccactggggaagcagtggcttcactctctacattttccaagatgacagcgccttag
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| Protein seq | MVGMRGAYGYNDNGNEGGVVVGGGEAEAEIAAMAVLHKVAAPPAQSTASKLKARVKETFFPDDPFRGFKGKPLTTKWVMAVQYLFPILDWVPSYSFSLFKSDLVAGLTIASLAIPQGISYAKLASLPPIIGLYSSFVPPMVYAVLGSSRDLAVGPVSIASLIMGSMLRQAVSPAAEPLLFLQLAFTSTFFAGLVQASLGILRLGFIIDFLSKATLVGFMAGAAIIVSLQQLKALLGIVHFTTEMGLVPVMASVIHHTKEWSWQTILMAVCFLVLLLTARHVSMKWPKLFWVSACAPLACVIVSTLLVFLFKAQKHGISIIGQLKCGLNRPSWDKLLFDPQYLGLTVKTGLVTGIISLTEGVAVGRTFASLKDYQVDGNKEMMAIGLMNIVGSCTSCYVTTGAFSRSAVNHNAGCKTAMSNVIMALTVMVTLLFLMPLFVYTPNVVLGAIIIAAVIGLIDLPAVYNIWKMDKMDFLVCLCAFAGVIFISVQQGLAIAVGISIFRVLLQITRPKMMIQGNIKGTDIYRNLHQYKDAQRVPGFLILTVEAPINFANTNYLNERIKRWIEEESSAGTKQSELHFVILDLSAVPAIDTSGISFLIDLKKSTEKHGLELILVNPTGEVMEKIQRANDAHGHFKSDSLYLTTGEAVASLSTFSKMTAP |
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| Function | Probable sulfate transporter 3.3 [UniProtKB/Swiss-Prot:Q9SXS2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0028640 | OsLima_04g0028640.01 | Chr04 | 34538542 | 34544156 | - | NAM | ||
| CDS seq | ATGGTGGGGATGCGTGGAGCTTATGGCTACAATGACAACGGCAACGAGGGTGGCGTAGTAGTTGGAGGGGGGGAGGCGGAGGCGGAGATCGCGGCGATGGCGGTGCTACACAAGGTGGCGGCGCCGCCGGCGCAGAGCACGGCGAGCAAGctgaaggcgagggtgaaggagaccttcttccccgacgacccgttccgcgggttcaaggggaagccgctgacgaccaagtgggtcatggcggtgcagtacctgttcccgatcctcgactgggtgcccagctactccttctccctcttcaaatccgacctcgtcgccggcctcaccatcgccagcctcgccatccctcagggcattagctacgcgaagctggcgagcttgcctccgatcatcggcctctattcgagctttgtgccgccgatggtgtacgcggtgctggggagctcgagggacctggcggtggggccggtgtcgatcgcgTCGctgataatggggtccatgctgcggcaggcggtgagccccgccgccgagccgctgctcttcctccagctcgccttcacctccaccttcttcgccggcctcgtccaggcctccctcggcatcctccggctggggttcatcatcgatttcctgtcgaaggcgacgcttgtcgggttcatggccggcgcggcgatcatcgtgtcgctgcagcagctcaaggcgctgctcggcatcgtccacttcaccaccgagatgggcctcgtccccgtcatggcctccgtcatccaccacaccaaggagtggtcgtggcagacgatcctgatggccgtgtgcttcctggtgctcctgctcacggcgaggcatgtgagtatgaaatggccaaagcttttctgggtttcagcttgtgctcccttggcatgtgttatcgtctctaccctgcttgttttcctgttcaaagctcagaaacatggcattagcataattgggcagctcaaatgtggcctgaatcgcccttcatgggataaactactctttgatcctcaatatttgggcctcactgtaaagactggccttgtcaccggaatcatctccctaacggaaggagtggcagttggtaggacatttgcttcactcaaggactaccaggtagatggtaacaaagagatgatggccataggattgatgaacattgtgggctcatgtacatcatgctatgtaactacaggagcattctctcgttctgctgtgaaccacaatgctggttgcaagactgccatgtcaaatgtgatcatggcactgactgtcatggtcacactgttgttcctcatgccactgtttgtgtacacaccgaatgttgttcttggagcaatcataattgctgctgtgattgggctcattgatctccctgctgtatacaacatctggaagatggacaagatggatttccttgtgtgtctatgtgcatttgctggtgtaatcttcatctcagtccaacaaggccttgcaatagcggttggtatatcaatattcagggtactgttgcaaatcacaaggccaaagatgatgattcaagggaacatcaaaggcactgatatttaccgaaatcttcatcagtacaaggacgctcaaagagttcctgggttcttaatcctgacagttgaggctcctataaactttgcaaacaccaactacctaaatgaaaggattaaaagatggatagaagaaGAaagttctgcaggaaccaaacaaagtgaactccatttcgtaattttggatctgtcagctgtccctgcaattgatacaagtggcatatcgttcctcatcgacttgaagaaatcaacagagaagcatggactagagcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatgatgctcatggtcatttcaaatcagatagtctgtacttaaccactggggaagcagtggcttcactctctacattttccaagatgacagcgccttag
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| Protein seq | MVGMRGAYGYNDNGNEGGVVVGGGEAEAEIAAMAVLHKVAAPPAQSTASKLKARVKETFFPDDPFRGFKGKPLTTKWVMAVQYLFPILDWVPSYSFSLFKSDLVAGLTIASLAIPQGISYAKLASLPPIIGLYSSFVPPMVYAVLGSSRDLAVGPVSIASLIMGSMLRQAVSPAAEPLLFLQLAFTSTFFAGLVQASLGILRLGFIIDFLSKATLVGFMAGAAIIVSLQQLKALLGIVHFTTEMGLVPVMASVIHHTKEWSWQTILMAVCFLVLLLTARHVSMKWPKLFWVSACAPLACVIVSTLLVFLFKAQKHGISIIGQLKCGLNRPSWDKLLFDPQYLGLTVKTGLVTGIISLTEGVAVGRTFASLKDYQVDGNKEMMAIGLMNIVGSCTSCYVTTGAFSRSAVNHNAGCKTAMSNVIMALTVMVTLLFLMPLFVYTPNVVLGAIIIAAVIGLIDLPAVYNIWKMDKMDFLVCLCAFAGVIFISVQQGLAIAVGISIFRVLLQITRPKMMIQGNIKGTDIYRNLHQYKDAQRVPGFLILTVEAPINFANTNYLNERIKRWIEEESSAGTKQSELHFVILDLSAVPAIDTSGISFLIDLKKSTEKHGLELILVNPTGEVMEKIQRANDAHGHFKSDSLYLTTGEAVASLSTFSKMTAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.637398 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0652400 | RBH | 6.439419 | 6.527524 | 6.675580 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g55800 | RBH | 3.675048 | 3.945049 | 1.679001 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0652400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029130 | RBH | 0.670316 | 1.089302 | 2.764292 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0029900 | RBH | 0.366984 | 0.0 | 5.179286 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029470 | RBH | 2.933188 | 0.0 | 19.278172 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029300 | RBH | 0.503115 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029560 | RBH | 9.362864 | 4.285418 | 17.791674 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028200 | RBH | 0.943841 | 0.066500 | 3.854751 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0528900 | RBH | 22.4450685 | 3.0317205 | 6.5062555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028480 | RBH | 1.463195 | 1.878756 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028590 | RBH | 11.455553 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029170 | RBH | 2.385277 | 0.0 | 3.387564 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029160 | RBH | 0.662601 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028610 | RBH | 0.729079 | 0.0 | 5.396911 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028400 | RBH | 1.601069 | 0.0 | 22.742811 |
