Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0027540 | OGI:04094960 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:33726673-33729171 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatatgaacttcacctctttgaggcaactgtttttccaaaaaaatgaatttcttatttgcatgtaaacttcgtcgatgttagagaagctagcaaacacgctttctcttgtccatgcagcatacaatccactctcccttttcttaaaaaaaaaaaacttagtgcagtatgctcacttagacaattgagggtggtttttgtccctcgaagaatgggcatacacaatacactcattttgtacataccaattAAaaaaatcataTtttttagaaaaataataagatagattaaacttgtaatatttcactttacggacatgaaaattaaaattgtatccatagaagtgtacataaaacaaatcacgactgtaaatatagtatacacttttgatcgttattgtttctatttatataagtcgaagtcattttttttTaaaaaattaatgtttgtgtctttgggtgacggtgagctagagcggagttatgggagctggtagggaaaaccgtttgctggaggacatggctgtgttctgagtccagtgatggaagctaatccctcccgcacgaaaaacggagcggtcctttagcgcgtgattaattaagtattagctaatttttttAaaaaaaatgaattaatttgatttttaagcaactttcgtatagaaactttttgaaaaaaacgcatcgtttagtagtttaaaaagcGTgcgcgcggaaaacgaggaagatgggttgggaacatggggatgcaaacacagctGatgtggtagagtccttggatagaccatgtgaggccggtttggctgttcaatggagcatcctgtttaggtaggaattggatttagggcctgatcggacctgctatctgctgctgccgctatggctgtggctgtttttcagctgctgccgctgcagccatttttagctcttgcagccacagttgctgcagcagcaagcagtatcgatcacaccctttaattccaaatgctgtgccgtacgacggtacgaggtacgagcaggtcagcgggtcaccagtgttgtgtgaagccaagctgtattcactagctcgggatagttggcacaaacggcatgaaaatgtggcgccgtaaataagtgaaatacagctgcgtactttttgaacacgctgcaaacatgagacggagaaatttcaatgcaaaacggaaaataaaactgcaaacatgcgacggagaaaactcaatgcaaaacgaaaaaaaaaattggagcctgtcagacaacctgagagccatcctggccaggcgaggcccggcaagaaacgatcctctacagccgtgggatcaaatcagccagtgatccggccgttaatcacgctctggcccacaggtcatgcgtcatcaaccaagcttaagtgcttgcctccttattagtcaaggatgcaacggtacgagcctatagaacagatcctgttcaagtaaggtcgtgccacggatcatctgcacaactcttttaaaccagctttgatctatgtggatagccgaggtggtactaatactagtctttgttgtcgtccaattgcgtaatgggccggcccatactgcaatacatgtcctgaaaggcttcatggcccactacgaaatgcttttctcctacagtttatcttactccttcacatcacacgtggtttccaacgtacccagtgttcccggcttccagcatttgctggtagcaccagtagaagacgcctgtcttgtgctatggtccctgactgcacatctgattcctccaagatccatgcatgcctgataactttaagttgcttcagaagaactttaagtgatctgttcgtatgtttaaagatcccttgataaaataagttgcagttctgaaaatcctagaacttggagacctggatgaattactgtcatctgaaccaaataagagatggccttagccactagctagagagactgaaattcaggggcaacaaatccacgagccaacgtgatcgcaattcacatggcaaaaaaaccacggggcaatttagtaacaagaaattttcatcatcatcttgatatatatacacatcaaggaagcaaccggccAaatctcaagccatggtttgctacttcagctctagctacgtactagtatctcgagtttatacactaattagtactccagcagctgatgtacatgaccgtcctcaacccctcctcggCcttctccgctctcctcctctccgccaccgccgccgcggaggcaggcagcttcttgccctgcgagacgccggcggcgttggccttggctgccttgtggatggaccgcagcgcgtagttccagcggcagagtccgccctggtccttgagcgcctccacggcgcccacgctcatcgccaccatccacgacgccttcgctgcacccgccattgatgagattgatccgatgatctcctctttaaatttctcgcgctgttgttgttgtgatttgtgaactgaattgaacgatgctttgttgttgttgtt
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| CDS seq | atggcgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaggcagccaaggccaacgccgccggcgtctcgcagggcaagaagctgcctgcctccgcggcggcggtggcggagaggaggagagcggagaagGccgaggaggggttgaggacggtcatatcacttaaagttcttctgaagcaacttaaagttatcaggcatgcatggatcttggaggaatcagatgtgcagtcagggaccatagcacaagacaggcgtcttctactggtgctaccagcaaatgctggaagccgggaacactggcgtgttcaaaaagtacgcagctgtatttcacttatttacggcgccacattttcatgccgtttgtgccaactatcccgagctagtgaatacagcttggcttcacacaacactggtgacccgctgacctgctcttgcctcaaagaggtgaagttcatatga
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| Protein seq | MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVISLKVLLKQLKVIRHAWILEESDVQSGTIAQDRRLLLVLPANAGSREHWRVQKVRSCISLIYGATFSCRLCQLSRASEYSLASHNTGDPLTCSCLKEVKFI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027540 | OsLima_04g0027540.01 | Chr04 | 33726673 | 33729075 | - | NAM | ||
| CDS seq | atggcgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaggcagccaaggccaacgccgccggcgtctcgcagggcaagaagctgcctgcctccgcggcggcggtggcggagaggaggagagcggagaagGccgaggaggggttgaggacggtcatatcacttaaagttcttctgaagcaacttaaagttatcaggcatgcatggatcttggaggaatcagatgtgcagtcagggaccatagcacaagacaggcgtcttctactggtgctaccagcaaatgctggaagccgggaacactggcgtgttcaaaaagtacgcagctgtatttcacttatttacggcgccacattttcatgccgtttgtgccaactatcccgagctagtgaatacagcttggcttcacacaacactggtgacccgctgacctgctcttgcctcaaagaggtgaagttcatatga
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| Protein seq | MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVISLKVLLKQLKVIRHAWILEESDVQSGTIAQDRRLLLVLPANAGSREHWRVQKVRSCISLIYGATFSCRLCQLSRASEYSLASHNTGDPLTCSCLKEVKFI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027540 | OsLima_04g0027540.02 | Chr04 | 33728692 | 33729171 | - | IsoSeq | ||
| CDS seq | acaacaacaacaaagcatcgttcaattcagttcacaaatcacaacaacaacagcgcgagaaatttaaagaggagatcatcggatcaatctcatcaatggcgggtgcagcgaaggcgtcgtggatggtgg |
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| Protein seq | TTTTKHRSIQFTNHNNNSARNLKRRSSDQSHQWRVQRRRRGWW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.485894 | 3.920375 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0635100 | SBH | 0.0 | 0.0 | 6.954032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54310 | RBH | 0.0 | 0.000000 | 0.746718 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0635100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027980 | SBH | 0.0 | 15.968359 | 11.539487 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028770 | RBH | 1.721946 | 28.392715 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028370 | RBH | 1.746059 | 51.030312 | 2.009679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028180 | RBH | 0.296648 | 0.858186 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028440 | RBH | 4.361814 | 137.904892 | 22.231361 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0510000 | RBH | 1.9111315 | 2.422929 | 6.2701255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0027110 | RBH | 2.466103 | 1.582870 | 0.202706 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0514000 | RBH | 1.8789075 | 2.188313 | 0.0284605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005040 | SBH | 0.0 | 0.422640 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027360 | RBH | 1.194500 | 85.619629 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027450 | RBH | 4.907775 | 153.805222 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0028050 | RBH | 0.0 | 0.0 | 0.523706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0028020 | RBH | 0.821569 | 8.775520 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027400 | RBH | 0.000000 | 0.0 | 0.965288 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
