Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0026250 | OGI:04092130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:32710789-32715033 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgatcacttcatgccgccagcgctaagggcgtcgaaatgtaggacaagtaacaagttctgtcacaatgtgttgtgcgttcctgggagcaaacctgatctacaatttagccaactagtatatacaaaagctccctttggaacgagcaactgataatttgtacactgaatttcactatgacattttctctatacaaaacgagctcgtagttgtcagaatggatggcagagactcctaaagtcccaattattagttagggattctagcagtcctgtgttctagctgccaattccatgacaaatgaaacactggtaactggtaagcaggaagccatcactgattatcatatctgtgctgctgcatgcttgtgatagtagtgcatcagagaaaatcccacactggtattgatgactgcccctgatcaccattctgatgctccatctggggatttgcccctacaaactgtagtgcatgcatatcactaggatagccctgcaagagtgtgtagatagcagttcatcaaacatggctacatagaatctgcagcatggttgcactcttagctttgaccttaggctattacttcattagtggacaagaatgtcaaatgctgaaaaaaaaggcataaaacttctcgacaacgtcgatagtatataactcacttgggttaattgattgtttccgggaaatgcctgctgttgcatggttggaagtgaggaagcctacagtaagccacaagaagctgatgaatacgatacttcaatagaatgagatatattttttaaagtaatagatgatcacatacctgaccaaactgattcaaattgttatgaagattctctgaggtaccaagcccatagctctgaccaagtatataatgcccctgaacaaggaaatcaacacctgtaataaataactgttccacagtgatgaaaggaacatcgaaaaaaaatactgtcttgaagaaaaatcaacctgcattaattgatctgggaggaactgatttggagaattccttgcttctgactgcctgttgtctggtgtcatattcagttctccatctcttgttccagtggctgcttcatcagggtgccttgtgtctagcaacaaaagaaattttacaaatttaattgtgcaattataaacagttagaacttgaaatccacaaaaaaattggagtcccaccttttcttgttttctgcattttattagttaccacagcacttttatggcgataaacttcagtcttcttctttccagtagatttctcaacttcattgctactattaaggagatattcattctgaaccatactagttaactggttcttaatggaagggcctacggatgacttattcgccagtgtagattgcaaaatccgttctacttcttcaacaagtcgatctgattggcttgccatcagtgcaaatgtctctgcattctctgcagccttagcagctatcttgtagaacgagcggcatagagctgcatagcgttctggaacagaagattttgtgccactatcaaaattaaatctattagtttcatcggtggaccccacctttgcaTCttttctccatctcttaagaaaatactgcggcctgatctctttaacattcctcagctcatatacctttaatatatggcaacataatattccagcattttcaaattttttacaagtacatgcaactgtgccatctgatgagtcaaaccgcacaagctggtctttagttttattcttaacagtgatcatgtactcagaaagagagccaaactccccacaactataagccatacagtccatacacagttcatattcctttctaaataactcaaagatgattggtgtatacacttttgcagcttgccatagcagtggcagagatattcttggtgccccttcgctggcttggtaatcagcttgtatctcttcttgcctcctcttctccattgagctttcaaagaacataaaaaatttagagagatctttctcacaatccaagaactctctcagcccaacgcaagaagtttctacttgtaacatccctttaatgtccccaaagaatatttgccggttatatggcaaggcccaattttcccgatcttcatacaacttagttaaccattcctctcctttgaggctgtacttcttgattatcacattccatatctcatcaaactcctggtcatcctcgatatcaaacatgcagtggtgaaaatcatgtgtgaattcctcaagagtattaaaaacatgttctaaggacttaaaagcattctggtatatttgccacacacaagaacggtgaattgtaccaggccaggtgagactcagggcttccttcaaagcagcagatcgatctgtcaatatcgtctttggctgtttcccacacatggcactcttaaaggtctcgagaagccacttgaaagattcaacagtttcatcatacagaaaagcagagccaaatatgattgtttgcctatgatggttcatacccaaaaacaaagctaagggttttctgcagtcatttgatctgtatgttgtgtcaaagcagatcacatcacagaaataatgatagtctactattgatcttgcatcagcccagaagacatttgttgctttatcattttcatccacctgaatggcatagtaaaaagagggattatcactcttcattcttcgaaaataatccattagagctccaaggtcctctgaattcatgtgtgttgaagacttggcccgaatgtaattcttgcatcctggaggaatgttactagcatttcggtttcctggttgaaccttggtcaacactctctctgacttcagcatatctatatcaaatggtgcagcaagctggtgattgtgatcttccacaaattctgctacccggtacttgccattggataccaattttatagctattcgtgcaggacaacctgtcctagtctctgggcgaggtcttttggcctcattctttgagcgaaatccctccctagagcatacaaagacccttgacctagcaacatttttcaccgttttatcccacaatccttttcgaacactgaatcctacatttccagcataactagcataatactcatatgctttctcttcattctcgaaaaccattccaactatgggcactcctccagcgttagcaataacttctggcggcacctctggatcttcttctggtttatctacagtctgggaggaaacgataacgtaagtgcagacaaatacacaatgtcatacatctaccacagcatcaaagtgcttcttggtcatttgtaccaagaatgtttttccctaccggtattctgtaaaaatcctaaaatcagactccatttgacatgattgtgcaccaatgctactaactccaagacacgctgaactcaatgcgcatctacattagcctacttgacacttgcaatatccaaccatgaaagccgggttttcagaagccgttggtgttggtgtagaagccgggttatataaattcccattatctaaaaaacaaccatgaaatgcgccacatggaacacacgaaatctctcaaacaattctctgagaaatcaatcagaaaccatggatccccggtctatataccttggcgccctccttgccgaggaactgccctctcgcaccccgccgccgccgctccgcgagagcctgcctcgatggggcctgcagccaacaatggcgccatcAaaaaataatactaataatgatcaaatttctatccatctttaacctaaactcaaacgcgaattcttccttcttggcgatgatatggatcgaggagctcaccttggcggtggcgcgcttgacgccctggcggccgctccgcttctgcatgtagcggaggacgatgtcgcggcgctcctcgtgcgtgtagcgggagacccggacgccgagctcgcggaggagccgcgtggtcgtgggctgcgtcgccgacgatggggtcgccgccgccttcccgccgccgtccttcccgtctccggcatcgggggcgccttggccggcggcggcggcggcgggcttggggtggctcttgggagcggcgcggcgcttcttggggttggaggagaggtcgaggtaggtgcgcacgatgtgggatatgcgggacgccggctgccgtggctgcgcggatgctgaggacgacggcgtgggctcgccggcggcggcggtggggtcgccggaggtggaggcggtggccatggtggtggtggtggtgggatcggcc
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| CDS seq | atggccaccgcctccacctccggcgaccccaccgccgccgccggcgagcccacgccgtcgtcctcagcatccgcgcagccacggcagccggcgtcccgcatatcccacatcgtgcgcacctacctcgacctctcctccaaccccaagaagcgccgcgccgctcccaagagccaccccaagcccgccgccgccgccgccggccaaggcgcccccgatgccggagacgggaaggacggcggcgggaaggcggcggcgaccccatcgtcggcgacgcagcccacgaccacgcggctcctccgcgagctcggcgtccgggtctcccgctacacgcacgaggagcgccgcgacatcgtcctccgctacatgcagaagcggagcggccgccagggcgtcaagcgcgccaccgccaaggtgagctcctcgatccatatcatcgccaagaaggaagaattcgcgtttgagtttaggccccatcgaggcaggctctcgcggagcggcggcggcggggtgcgagagggcagttcctcggcaaggagggcgccaagctcaatggagaagaggaggcaagaagagatacaagctgattaccaagccagcgaaggggcaccaagaatatctctgccactgctatggcaagctgcaaaagtgtatacaccaatcatctttgagttatttagaaaggaatatgaactgtgtatggactgtatggcttatagttgtggggagtttggctctctttctgagtacatgatcactgttaagaataaaactaaagaccagcttgtgcggtttgactcatcagatggcacagttgcatgtacttgtaaaaaatttgaaaatgctggaatattatgttgccatatattaaaggtatatgagctgaggaatgttaaagagatcaggccgcagtattttcttaagagatggagaaaaGAtgcaaaggtggggtccaccgatgaaactaatagatttaattttgatagtggcacaaaatcttctgttccagaacgctatgcagctctatgccgctcgttctacaagatagctgctaaggctgcagagaatgcagagacatttgcactgatggcaagccaatcagatcgacttgttgaagaagtagaacggattttgcaatctacactggcgaataagtcatccgtaggcccttccattaagaaccagttaactagtatggttcagaatgaatatctccttaatagtagcaatgaagttgagaaatctactggaaagaagaagactgaagtttatcgccataaaagtgctgtggtaactaataaaatgcagaaaacaagaaaagacacaaggcaccctgatgaagcagccactggaacaagagatggagaactgaatatgacaccagacaacaggcagtcagaagcaaggaattctccaaatcagttcctcccagatcaattaatgcaggggcattatatacttggtcagagctatgggcttggtacctcagagaatcttcataacaatttgaatcagtttggtcaggcttcctcacttccaaccatgcaacagcaggcatttcccggaaacaatcaattaacccaaggctatcctagtgatatgcatgcactacagtttgtaggggcaaatccccagatggagcatcagaatggtgatcaggggcagtcatcaataccagtgtgggattttctctga
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| Protein seq | MATASTSGDPTAAAGEPTPSSSASAQPRQPASRISHIVRTYLDLSSNPKKRRAAPKSHPKPAAAAAGQGAPDAGDGKDGGGKAAATPSSATQPTTTRLLRELGVRVSRYTHEERRDIVLRYMQKRSGRQGVKRATAKVSSSIHIIAKKEEFAFEFRPHRGRLSRSGGGGVREGSSSARRAPSSMEKRRQEEIQADYQASEGAPRISLPLLWQAAKVYTPIIFELFRKEYELCMDCMAYSCGEFGSLSEYMITVKNKTKDQLVRFDSSDGTVACTCKKFENAGILCCHILKVYELRNVKEIRPQYFLKRWRKDAKVGSTDETNRFNFDSGTKSSVPERYAALCRSFYKIAAKAAENAETFALMASQSDRLVEEVERILQSTLANKSSVGPSIKNQLTSMVQNEYLLNSSNEVEKSTGKKKTEVYRHKSAVVTNKMQKTRKDTRHPDEAATGTRDGELNMTPDNRQSEARNSPNQFLPDQLMQGHYILGQSYGLGTSENLHNNLNQFGQASSLPTMQQQAFPGNNQLTQGYPSDMHALQFVGANPQMEHQNGDQGQSSIPVWDFL |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0026250 | OsLima_04g0026250.01 | Chr04 | 32710789 | 32715033 | - | NAM | ||
| CDS seq | atggccaccgcctccacctccggcgaccccaccgccgccgccggcgagcccacgccgtcgtcctcagcatccgcgcagccacggcagccggcgtcccgcatatcccacatcgtgcgcacctacctcgacctctcctccaaccccaagaagcgccgcgccgctcccaagagccaccccaagcccgccgccgccgccgccggccaaggcgcccccgatgccggagacgggaaggacggcggcgggaaggcggcggcgaccccatcgtcggcgacgcagcccacgaccacgcggctcctccgcgagctcggcgtccgggtctcccgctacacgcacgaggagcgccgcgacatcgtcctccgctacatgcagaagcggagcggccgccagggcgtcaagcgcgccaccgccaaggtgagctcctcgatccatatcatcgccaagaaggaagaattcgcgtttgagtttaggccccatcgaggcaggctctcgcggagcggcggcggcggggtgcgagagggcagttcctcggcaaggagggcgccaagctcaatggagaagaggaggcaagaagagatacaagctgattaccaagccagcgaaggggcaccaagaatatctctgccactgctatggcaagctgcaaaagtgtatacaccaatcatctttgagttatttagaaaggaatatgaactgtgtatggactgtatggcttatagttgtggggagtttggctctctttctgagtacatgatcactgttaagaataaaactaaagaccagcttgtgcggtttgactcatcagatggcacagttgcatgtacttgtaaaaaatttgaaaatgctggaatattatgttgccatatattaaaggtatatgagctgaggaatgttaaagagatcaggccgcagtattttcttaagagatggagaaaaGAtgcaaaggtggggtccaccgatgaaactaatagatttaattttgatagtggcacaaaatcttctgttccagaacgctatgcagctctatgccgctcgttctacaagatagctgctaaggctgcagagaatgcagagacatttgcactgatggcaagccaatcagatcgacttgttgaagaagtagaacggattttgcaatctacactggcgaataagtcatccgtaggcccttccattaagaaccagttaactagtatggttcagaatgaatatctccttaatagtagcaatgaagttgagaaatctactggaaagaagaagactgaagtttatcgccataaaagtgctgtggtaactaataaaatgcagaaaacaagaaaagacacaaggcaccctgatgaagcagccactggaacaagagatggagaactgaatatgacaccagacaacaggcagtcagaagcaaggaattctccaaatcagttcctcccagatcaattaatgcaggggcattatatacttggtcagagctatgggcttggtacctcagagaatcttcataacaatttgaatcagtttggtcaggcttcctcacttccaaccatgcaacagcaggcatttcccggaaacaatcaattaacccaaggctatcctagtgatatgcatgcactacagtttgtaggggcaaatccccagatggagcatcagaatggtgatcaggggcagtcatcaataccagtgtgggattttctctga
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| Protein seq | MATASTSGDPTAAAGEPTPSSSASAQPRQPASRISHIVRTYLDLSSNPKKRRAAPKSHPKPAAAAAGQGAPDAGDGKDGGGKAAATPSSATQPTTTRLLRELGVRVSRYTHEERRDIVLRYMQKRSGRQGVKRATAKVSSSIHIIAKKEEFAFEFRPHRGRLSRSGGGGVREGSSSARRAPSSMEKRRQEEIQADYQASEGAPRISLPLLWQAAKVYTPIIFELFRKEYELCMDCMAYSCGEFGSLSEYMITVKNKTKDQLVRFDSSDGTVACTCKKFENAGILCCHILKVYELRNVKEIRPQYFLKRWRKDAKVGSTDETNRFNFDSGTKSSVPERYAALCRSFYKIAAKAAENAETFALMASQSDRLVEEVERILQSTLANKSSVGPSIKNQLTSMVQNEYLLNSSNEVEKSTGKKKTEVYRHKSAVVTNKMQKTRKDTRHPDEAATGTRDGELNMTPDNRQSEARNSPNQFLPDQLMQGHYILGQSYGLGTSENLHNNLNQFGQASSLPTMQQQAFPGNNQLTQGYPSDMHALQFVGANPQMEHQNGDQGQSSIPVWDFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.138337 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0615900 | RBH | 0.289986 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52560 | RBH | 0.778995 | 0.987940 | 0.586479 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0615900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026520 | RBH | 0.467570 | 2.135750 | 3.765613 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027300 | RBH | 0.083063 | 1.678036 | 2.113346 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027040 | RBH | 1.118416 | 4.598434 | 3.990101 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026720 | RBH | 0.200395 | 0.077332 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027010 | RBH | 2.375957 | 20.247881 | 8.490769 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0492200 | RBH | 2.792022 | 5.9038505 | 6.937232 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025820 | RBH | 0.097388 | 0.142392 | 0.501794 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0496800 | RBH | 2.2105325 | 4.6714685 | 9.468935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026080 | RBH | 0.298444 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026110 | RBH | 1.045866 | 3.012523 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026590 | RBH | 0.238733 | 0.841815 | 0.443595 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026750 | RBH | 0.197815 | 1.971181 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025970 | RBH | 0.277126 | 1.619350 | 1.722919 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025860 | RBH | 0.0 | 5.815841 | 3.997206 |
