Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0025740 | OGI:04091200 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:32270325-32271812 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagcggcgtaccgggttctagaccgggctgacattgttgttcaagacatggaggcgggggaggtgttggcgtcacagccgcattcgccgacgttggttttgcaagcgccgggtgtgtggttctctccgcaagcggtgcaagcagtggagcaaccagaggccgacgtgggaatccctaccccgctggcggcgcctgtggttgcaacggcaaaggcgcttatcgttctggacgacgactgcagctgggcgctcgtggctggtggtgtgtcgcctctttcaccgccgctccaactctccctggacgagttaaccggcggtgaactgtcggcgctcggcacggagaaggatggcgaccgtgctgagctcagtgatgaggtccgggaggccactgtggaccacgttcacgttcacggggacgacttggcttcagggcaggaagtcgcattaactccgaatgggggatatgcattaacgcgtgctgcgttggcctcgccgcgtattagagcgagccagtcgtcttttggcgcgttggccaagaagctctcttttgaggatacgatggctgaggtgtcgctcgtggagcatgggtgcgagcggccagcattgaaggcgactggcgacgcgctgagctcaacgcaggagagcaggagtgatcgtgggtttgaatcggcggcaaaggcgggagagttccgtgtctatgtgcggaagcaggcccagaagaaaccgagccatgagcaacctgggccggaggggatcggcctcatgggcttggcaggccaggatctggggcaggctgacctgggacgggctgtggctggcgtgggacaggaaatgtcGgtgggccaagttgtatgtggcgaggacgagccacctcaggcccaccaagaagaagtggcccacagcgacgacgagcggccggtccaggaaactgagatcgagagcagcagggaggcgctcagcggagagatgatgctcccacctcccgcctcgccgtcgacggcactcgcccgcgcgcggccaacctcggaggggtcgccggcgaacacgccgctaccccccgaggcggaccagattcttcagggcttcctcgcgtcggtcgctactgagcctcccccctccctgctcgggaggaggccgccggcgtcagtccccaaatccaagcctcgtcggcgcaatgtgatccctgaggggttcacgccgtggcgcagcccacgtctgcaacaacaagggaacggagctcatcgccattcaacttcaaaagcgcagaaggtaacgatgaagaagatgggcatcattgaagaggaagaagaagcggatcaagacacattccagcagtacactaccgtgtttgatcagccgttatcgacccagcacatgaaggcgctagcggagctgctggatgtggatgttgcgctggaggaagcagatgttctaccgccggacctggcttcgctggtggcggcgggggtggaatcccctgcttga
More
|
||||||||||
| CDS seq | atggcagcggcgtaccgggttctagaccgggctgacattgttgttcaagacatggaggcgggggaggtgttggcgtcacagccgcattcgccgacgttggttttgcaagcgccgggtgtgtggttctctccgcaagcggtgcaagcagtggagcaaccagaggccgacgtgggaatccctaccccgctggcggcgcctgtggttgcaacggcaaaggcgcttatcgttctggacgacgactgcagctgggcgctcgtggctggtggtgtgtcgcctctttcaccgccgctccaactctccctggacgagttaaccggcggtgaactgtcggcgctcggcacggagaaggatggcgaccgtgctgagctcagtgatgaggtccgggaggccactgtggaccacgttcacgttcacggggacgacttggcttcagggcaggaagtcgcattaactccgaatgggggatatgcattaacgcgtgctgcgttggcctcgccgcgtattagagcgagccagtcgtcttttggcgcgttggccaagaagctctcttttgaggatacgatggctgaggtgtcgctcgtggagcatgggtgcgagcggccagcattgaaggcgactggcgacgcgctgagctcaacgcaggagagcaggagtgatcgtgggtttgaatcggcggcaaaggcgggagagttccgtgtctatgtgcggaagcaggcccagaagaaaccgagccatgagcaacctgggccggaggggatcggcctcatgggcttggcaggccaggatctggggcaggctgacctgggacgggctgtggctggcgtgggacaggaaatgtcGgtgggccaagttgtatgtggcgaggacgagccacctcaggcccaccaagaagaagtggcccacagcgacgacgagcggccggtccaggaaactgagatcgagagcagcagggaggcgctcagcggagagatgatgctcccacctcccgcctcgccgtcgacggcactcgcccgcgcgcggccaacctcggaggggtcgccggcgaacacgccgctaccccccgaggcggaccagattcttcagggcttcctcgcgtcggtcgctactgagcctcccccctccctgctcgggaggaggccgccggcgtcagtccccaaatccaagcctcgtcggcgcaatgtgatccctgaggggttcacgccgtggcgcagcccacgtctgcaacaacaagggaacggagctcatcgccattcaacttcaaaagcgcagaaggtaacgatgaagaagatgggcatcattgaagaggaagaagaagcggatcaagacacattccagcagtacactaccgtgtttgatcagccgttatcgacccagcacatgaaggcgctagcggagctgctggatgtggatgttgcgctggaggaagcagatgttctaccgccggacctggcttcgctggtggcggcgggggtggaatcccctgcttga
More
|
||||||||||
| Protein seq | MAAAYRVLDRADIVVQDMEAGEVLASQPHSPTLVLQAPGVWFSPQAVQAVEQPEADVGIPTPLAAPVVATAKALIVLDDDCSWALVAGGVSPLSPPLQLSLDELTGGELSALGTEKDGDRAELSDEVREATVDHVHVHGDDLASGQEVALTPNGGYALTRAALASPRIRASQSSFGALAKKLSFEDTMAEVSLVEHGCERPALKATGDALSSTQESRSDRGFESAAKAGEFRVYVRKQAQKKPSHEQPGPEGIGLMGLAGQDLGQADLGRAVAGVGQEMSVGQVVCGEDEPPQAHQEEVAHSDDERPVQETEIESSREALSGEMMLPPPASPSTALARARPTSEGSPANTPLPPEADQILQGFLASVATEPPPSLLGRRPPASVPKSKPRRRNVIPEGFTPWRSPRLQQQGNGAHRHSTSKAQKVTMKKMGIIEEEEEADQDTFQQYTTVFDQPLSTQHMKALAELLDVDVALEEADVLPPDLASLVAAGVESPA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0025740 | OsLima_04g0025740.01 | Chr04 | 32270325 | 32271812 | + | NAM | ||
| CDS seq | atggcagcggcgtaccgggttctagaccgggctgacattgttgttcaagacatggaggcgggggaggtgttggcgtcacagccgcattcgccgacgttggttttgcaagcgccgggtgtgtggttctctccgcaagcggtgcaagcagtggagcaaccagaggccgacgtgggaatccctaccccgctggcggcgcctgtggttgcaacggcaaaggcgcttatcgttctggacgacgactgcagctgggcgctcgtggctggtggtgtgtcgcctctttcaccgccgctccaactctccctggacgagttaaccggcggtgaactgtcggcgctcggcacggagaaggatggcgaccgtgctgagctcagtgatgaggtccgggaggccactgtggaccacgttcacgttcacggggacgacttggcttcagggcaggaagtcgcattaactccgaatgggggatatgcattaacgcgtgctgcgttggcctcgccgcgtattagagcgagccagtcgtcttttggcgcgttggccaagaagctctcttttgaggatacgatggctgaggtgtcgctcgtggagcatgggtgcgagcggccagcattgaaggcgactggcgacgcgctgagctcaacgcaggagagcaggagtgatcgtgggtttgaatcggcggcaaaggcgggagagttccgtgtctatgtgcggaagcaggcccagaagaaaccgagccatgagcaacctgggccggaggggatcggcctcatgggcttggcaggccaggatctggggcaggctgacctgggacgggctgtggctggcgtgggacaggaaatgtcGgtgggccaagttgtatgtggcgaggacgagccacctcaggcccaccaagaagaagtggcccacagcgacgacgagcggccggtccaggaaactgagatcgagagcagcagggaggcgctcagcggagagatgatgctcccacctcccgcctcgccgtcgacggcactcgcccgcgcgcggccaacctcggaggggtcgccggcgaacacgccgctaccccccgaggcggaccagattcttcagggcttcctcgcgtcggtcgctactgagcctcccccctccctgctcgggaggaggccgccggcgtcagtccccaaatccaagcctcgtcggcgcaatgtgatccctgaggggttcacgccgtggcgcagcccacgtctgcaacaacaagggaacggagctcatcgccattcaacttcaaaagcgcagaaggtaacgatgaagaagatgggcatcattgaagaggaagaagaagcggatcaagacacattccagcagtacactaccgtgtttgatcagccgttatcgacccagcacatgaaggcgctagcggagctgctggatgtggatgttgcgctggaggaagcagatgttctaccgccggacctggcttcgctggtggcggcgggggtggaatcccctgcttga
More
|
|||||||
| Protein seq | MAAAYRVLDRADIVVQDMEAGEVLASQPHSPTLVLQAPGVWFSPQAVQAVEQPEADVGIPTPLAAPVVATAKALIVLDDDCSWALVAGGVSPLSPPLQLSLDELTGGELSALGTEKDGDRAELSDEVREATVDHVHVHGDDLASGQEVALTPNGGYALTRAALASPRIRASQSSFGALAKKLSFEDTMAEVSLVEHGCERPALKATGDALSSTQESRSDRGFESAAKAGEFRVYVRKQAQKKPSHEQPGPEGIGLMGLAGQDLGQADLGRAVAGVGQEMSVGQVVCGEDEPPQAHQEEVAHSDDERPVQETEIESSREALSGEMMLPPPASPSTALARARPTSEGSPANTPLPPEADQILQGFLASVATEPPPSLLGRRPPASVPKSKPRRRNVIPEGFTPWRSPRLQQQGNGAHRHSTSKAQKVTMKKMGIIEEEEEADQDTFQQYTTVFDQPLSTQHMKALAELLDVDVALEEADVLPPDLASLVAAGVESPA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51930 | RBH | 0.0 | 0.000000 | 0.057369 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025980 | RBH | 0.0 | 0.840705 | 1.019297 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026480 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0486100 | RBH | 0.030127 | 0.0584925 | 0.0625895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025250 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0489900 | RBH | 0.0662545 | 0.2169985 | 0.3037165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025550 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026030 | SBH | 0.0 | 0.0 | 0.076507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026180 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025340 | RBH | 0.0 | 0.000000 | 0.504607 |
