Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0025580 | OGI:04090870 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:32138322-32141062 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaagcagcattatcagccgaagaacaagacaaaacaaaaagttcaagatttctgccgtcttctgcccaaggatgattacagttttagttggaggcccacgacgtgcacagcacgctcaatgatcgagagcatcctgtgctcatggggtacaggcattcagcccaacccacaacatatatttttcttttttcttttattcagtagcagcagcttgatgcatacactacattctacaggtacaagtacaagctctcagaaaaaaagaccatagcgcaaggcactgtgttgcaggaatacacggatccatgttcatggcattttgatagtagtaacagcactgggcacatcatcttctgaagcgactgatgagatgacacgctggtgctcacgttcatagctgtctgtatgtacaacatcagcagaactcgacagctccaagcttcctatttctcagggggtctgcacaatataaacactccaggctcagaattgtctttcaatgaagtttttttttgacggaaaaaaaaaacttcattgaaagaattgtctttcaatgaagttgaagataagcaaagcttattccagatgcagtttagaatgttagatttcatgtcctgatctcttataactccaggtgcacactgtatagtgggataaggtgttttgggacatgaatttggagtctggatcagcaaggggccttgccagttgccacacaaaaaacagtaatatcacatcaagttacctcctcttttttatttggttgtaaatgcacgctattgggctacgtatccaccaagctgaacagttctgtactgttatgtctactttaaaacacttaacatagtttagcatttttacaacaaacaacactgttgcaatgccaggtgctggtgcatatggcaattttacttaagtcatatcacaaatgcacaacaattggagtataggacaaggagaaagtagtgatagtaagcattttcttggagaatgtgaaacaacttacccctgctaaagtgatgcaaacaaattagctttcctcttcatcagtttgagtagcaacttttcttgaactctccactggatgagaaaatttccctttaaacagaagtaattaatctgattaggaagtattcaacataatgctacgtgtagagaaaaatcatttaggttccaatactaaaggttcacaatgtacacacatggagaagatataaactgaaaacctgaaatctacccaacccagccataggtaaactcagcccatatacacaaaactccccaagcatgaggcccacccaacaactgctggttcaagacaatctgaaacacataatgttagcaactcagtatttctatctattctagaccatgcacaattagggcatgaacactcaatatttgcaagaaaacgaatcatatagggcatgaacaattgaacccaaactatatatgtagcaacccagtcataaattctaaaatcagttcaacctaaacttaccaacacaatgttctttaggctcattttaactcgtcagtcatcgcgtacagccgtacaaactattagaaagtgcctgttataagttcagttctgccaaaacaacaagctgagtgctcctgttactgaggtaattacagaatctacatttggaaggaataaattctgatgcctcatgatatggttatgtataactgacattgagattagttagtaactctcacaaacaaatattaatgcagagaaatccaggtttagcatctgcatgaatcaagtggatggaagatttactggaacctctgtctaaattgttttgaattaactagtactaaaatagttgtggatcaaatttgcgaagccaaactaggtgtagagttttcttcctgtcaagctcatgaaggaaaaggagtactagtaagatgaaccaaaaactattagaaccatggttcatacatgacactccaaagccaaaataaactactaaaatacagtaatactctaatttcaacctgcaaatgaggggaaggtaatccatgtacagttgtttcatacttcaactattcactatactctcaacctaaacaatcatgaatccccaatgcttcaccaatcaaacaaacacccgcggtttgctcctaaccaaggctacttacagaaaaacaacgcaacaacttccatttcgcaatccaaacaaaatgctaaatacctttacaacttccattccgcaatccagaaatgctaattgcctaattcgatcgaactcaactcaccttcgacgaagtaagccaccgacggccacccgcgcatggtggtgaggcacatcatctcctcctccgtcatcgcctccgcgttccaggcggcgccaatcgcgctgcggacggcggtgcccacgaggtcggcggcgaccccgcgccgcatctccgggacccagtaggatcctcccggcacgaaggggagccactccggcgccgcccgccgcacgagtaccccgtggatggcgtcctccagtcgccgcatccccatctcccgcggcccgaagccgcccccctcgacgccggacgaggacgacgaggagggggcgtcctccgacgacaggtcgatctcgatgaactccaccttcgatgagacaccacggacatggaggcggccgtaggagggcaccgcggcggagtccgcgcgggccaaggctagggttcgcgagaggaggcgagccatggctgagagagagagagagagagagcgg
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| CDS seq | atggctcgcctcctctcgcgaaccctagccttggcccgcgcggactccgccgcggtgccctcctacggccgcctccatgtccgtggtgtctcatcgaaggtggagttcatcgagatcgacctgtcgtcggaggacgccccctcctcgtcgtcctcgtccggcgtcgaggggggcggcttcgggccgcgggagatggggatgcggcgactggaggacgccatccacggggtactcgtgcggcgggcggcgccggagtggctccccttcgtgccgggaggatcctactgggtcccggagatgcggcgcggggtcgccgccgacctcgtgggcaccgccgtccgcagcgcgattggcgccgcctggaacgcggaggcgatgacggaggaggagatgatgtgcctcaccaccatgcgcgggtggccgtcggtggcttacttcgtcgaagggaaattttctcatccagtggagagttcaagaaaagttgctactcaaactgatgaagaggaaagctaa
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| Protein seq | MARLLSRTLALARADSAAVPSYGRLHVRGVSSKVEFIEIDLSSEDAPSSSSSSGVEGGGFGPREMGMRRLEDAIHGVLVRRAAPEWLPFVPGGSYWVPEMRRGVAADLVGTAVRSAIGAAWNAEAMTEEEMMCLTTMRGWPSVAYFVEGKFSHPVESSRKVATQTDEEES |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0025580 | OsLima_04g0025580.02 | Chr04 | 32138322 | 32141062 | - | NAM | ||
| CDS seq | atggctcgcctcctctcgcgaaccctagccttggcccgcgcggactccgccgcggtgccctcctacggccgcctccatgtccgtggtgtctcatcgaaggtggagttcatcgagatcgacctgtcgtcggaggacgccccctcctcgtcgtcctcgtccggcgtcgaggggggcggcttcgggccgcgggagatggggatgcggcgactggaggacgccatccacggggtactcgtgcggcgggcggcgccggagtggctccccttcgtgccgggaggatcctactgggtcccggagatgcggcgcggggtcgccgccgacctcgtgggcaccgccgtccgcagcgcgattggcgccgcctggaacgcggaggcgatgacggaggaggagatgatgtgcctcaccaccatgcgcgggtggccgtcggtggcttacttcgtcgaagggaaattttctcatccagtggagagttcaagaaaagttgctactcaaactgatgaagaggaaagctaa
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| Protein seq | MARLLSRTLALARADSAAVPSYGRLHVRGVSSKVEFIEIDLSSEDAPSSSSSSGVEGGGFGPREMGMRRLEDAIHGVLVRRAAPEWLPFVPGGSYWVPEMRRGVAADLVGTAVRSAIGAAWNAEAMTEEEMMCLTTMRGWPSVAYFVEGKFSHPVESSRKVATQTDEEES |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0025580 | OsLima_04g0025580.01 | Chr04 | 32138322 | 32141062 | - | NAM | ||
| CDS seq | atggctcgcctcctctcgcgaaccctagccttggcccgcgcggactccgccgcggtgccctcctacggccgcctccatgtccgtggtgtctcatcgaaggtggagttcatcgagatcgacctgtcgtcggaggacgccccctcctcgtcgtcctcgtccggcgtcgaggggggcggcttcgggccgcgggagatggggatgcggcgactggaggacgccatccacggggtactcgtgcggcgggcggcgccggagtggctccccttcgtgccgggaggatcctactgggtcccggagatgcggcgcggggtcgccgccgacctcgtgggcaccgccgtccgcagcgcgattggcgccgcctggaacgcggaggcgatgacggaggaggagatgatgtgcctcaccaccatgcgcgggtggccgtcggtggcttacttcgtcgaagaactgaacttataa
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| Protein seq | MARLLSRTLALARADSAAVPSYGRLHVRGVSSKVEFIEIDLSSEDAPSSSSSSGVEGGGFGPREMGMRRLEDAIHGVLVRRAAPEWLPFVPGGSYWVPEMRRGVAADLVGTAVRSAIGAAWNAEAMTEEEMMCLTTMRGWPSVAYFVEELNL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr04 | 32139419 | 32140590 | - | OsLima_04g0025580.01 | OsLima_04g0025580.01,OsLima_04g0025580.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.107610 | 0.109074 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0606700 | RBH | 0.242751 | 0.457307 | 1.297286 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51770 | RBH | 0.132174 | 0.247645 | 0.331112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0606700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025820 | RBH | 0.316458 | 4.599707 | 2.773652 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026610 | RBH | 0.245053 | 0.0 | 2.268543 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026350 | RBH | 0.743500 | 0.0 | 2.890666 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026060 | RBH | 0.765992 | 0.166886 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026320 | RBH | 8.094276 | 3.099725 | 2.860269 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0484000 | RBH | 4.109823 | 4.9159585 | 21.82691 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025090 | RBH | 0.304759 | 0.000000 | 0.546004 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0487600 | RBH | 8.0811875 | 9.3084285 | 14.2216355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007250 | RBH | 0.643275 | 0.094412 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025390 | RBH | 0.491205 | 7.076412 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025460 | RBH | 2.946933 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025880 | RBH | 0.000000 | 0.502192 | 1.382103 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026030 | RBH | 0.284048 | 1.336707 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025290 | RBH | 0.541806 | 0.0 | 1.936171 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025180 | RBH | 0.838270 | 0.000000 | 1.360457 |
