Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0025480 | OGI:04090640 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:32082868-32085303 | ||||||||
| Gene Symbol | RPL7, rpl7 | ||||||||||
| DNA seq | agccaccaccaaaccccccctacttaagcccgcctcccactcgcttagccgccgccgccgcctctccccgcctccccactccccgtcTcctcctccctcacgcagctcgtcgaggtaagagctcgtcgccggtagccattgccgccctgctcctctctgttcgctcgtcgccccgtcccgatctgaccctggtgggtttcgctgttcgctgcgcagatggcgtccgaggcggccaaggtggtggtgccggagtccgtgctccgcaagaGgaagcgggaggaggtgtgggcggccgcgagcaaggagaaggccgtcgccgagaagaagaagtccatcgagagccgcaagctcatcttctcccgcgccaagcagtacgccgaggagtacgaggcccaggttagatcgttggcccccacatgatccattcccgtctcgatgttatattttgcgtggcaaagacagcgattccgtgggatctgggtttggtactcccaaatcaggttgtattcgatgaatgcgaatttcgcttgatcttatactgggtgaacacgacgaagattcattcattattcgtagcattgcaaatatttatgctttgagacaaatctatgttagattgccgctcatcgttaacccacaaatgcgtttgcttggtcaccctaatgctagttttcacgtgtagtgttgaaaagctgcatgttctgcttctcgtgtgttccgttgcaagttccactgcaaaagtactgctagtgaatcatgctggtttgggaaattgtcagttcttttttgcgatatacctaatgcgttaggtcatttcagaatatttttattgctgtatcttgatatggtaagcacataactctttttgagtttgtaacttcgtatgataatagtagttgcttatatatgttaaaactgttcgcagtcaataaaaattgaataagaattgagcagcctgttgtacttcattctaatgtcggtgtgatgagcaggagaaggagctggtgcaacttaagcgtgaggctcggatgaagggtggtttctatgtcagccctgaggaaaagttgctgtttgtggtccgtatccgtgggtaaggaaccacttaagttgtattgttataatgtcactgactatagatgatgatctggttgtatgttgatgctaatgttacaaatctgttgactgtagtatcaatgccatgcacccaaagaccaggaagattttgcagctcttgcgtttgaggcaggtgggtgtggttttcacaatcatttgaatgcacgtgttgaaattatgatatagtactgtcaattgaggaaaaatgttaattttgcagatctttaatgGAgtgttcttgaaggtcaacaaagccaccattaacatgctgcgcagggttgagccatatgttgcatatgggtaagctaccataattacattcgagcctaatatattatatatatgcaccatcttgctattttattttgaattaccatctgttgttttactagaaatgtgatcttggcatttactagaataactggaacatttcacaattaaaggcttctaaaattgcttacactgaatttgtgttattaagtagcaactgtttgcatcattgtgttctgcatcaaaatcataacaaattgtagtcaatcaattttatattttaatttgaattgtctagggtctgaaatagttcaagcccctaatgactagagttgattattgatcttcttactagattagtgattcttatgttttaggtacccaaatttgaagagtgtccgtgaattgatctacaagaggggctatggaaagctcaacaagcaaagaatccctcttacaaacaacaaagtcatcgaggaggtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcagggtttgggtaagcatgacatcatctgcattgaggatcttgttcatgagatcatgactgttggcccacatttcaaggaggccaacaacttcctctggccattcaagctgaaggcaccactgggtgggctgaagaagaagaggaaccactacgttgagggtggtgatgctggtaaccgtgagaactacatcaacgaactcatcagaaggatgaactagttccatgagctcattgttagcgcactgtgtttggatgatattttaaagtaagcttattttgcactaggaagtgtatcaagaaaatcttgcaattttgatattcagaatctgacccttttatccggtggtttgatgttattcctaaatttgaagtgcttttaatcatgatatgcgaacatgtgttagtacttattatggctctactgcctttgtgttgacatcacggttgctgttcagctcttataccatttatacaatgcttagcctgaacatgtcccaac
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| CDS seq | atggcgtccgaggcggccaaggtggtggtgccggagtccgtgctccgcaagaGgaagcgggaggaggtgtgggcggccgcgagcaaggagaaggccgtcgccgagaagaagaagtccatcgagagccgcaagctcatcttctcccgcgccaagcagtacgccgaggagtacgaggcccaggagaaggagctggtgcaacttaagcgtgaggctcggatgaagggtggtttctatgtcagccctgaggaaaagttgctgtttgtggtccgtatccgtggtatcaatgccatgcacccaaagaccaggaagattttgcagctcttgcgtttgaggcagatctttaatgGAgtgttcttgaaggtcaacaaagccaccattaacatgctgcgcagggttgagccatatgttgcatatgggtacccaaatttgaagagtgtccgtgaattgatctacaagaggggctatggaaagctcaacaagcaaagaatccctcttacaaacaacaaagtcatcgaggagggtttgggtaagcatgacatcatctgcattgaggatcttgttcatgagatcatgactgttggcccacatttcaaggaggccaacaacttcctctggccattcaagctgaaggcaccactgggtgggctgaagaagaagaggaaccactacgttgagggtggtgatgctggtaaccgtgagaactacatcaacgaactcatcagaaggatgaactag
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| Protein seq | MASEAAKVVVPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN |
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| Function | 60S ribosomal protein L7-3 [UniProtKB/Swiss-Prot:P60039] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0025480 | OsLima_04g0025480.01 | Chr04 | 32082868 | 32085303 | + | NAM | ||
| CDS seq | atggcgtccgaggcggccaaggtggtggtgccggagtccgtgctccgcaagaGgaagcgggaggaggtgtgggcggccgcgagcaaggagaaggccgtcgccgagaagaagaagtccatcgagagccgcaagctcatcttctcccgcgccaagcagtacgccgaggagtacgaggcccaggagaaggagctggtgcaacttaagcgtgaggctcggatgaagggtggtttctatgtcagccctgaggaaaagttgctgtttgtggtccgtatccgtggtatcaatgccatgcacccaaagaccaggaagattttgcagctcttgcgtttgaggcagatctttaatgGAgtgttcttgaaggtcaacaaagccaccattaacatgctgcgcagggttgagccatatgttgcatatgggtacccaaatttgaagagtgtccgtgaattgatctacaagaggggctatggaaagctcaacaagcaaagaatccctcttacaaacaacaaagtcatcgaggagggtttgggtaagcatgacatcatctgcattgaggatcttgttcatgagatcatgactgttggcccacatttcaaggaggccaacaacttcctctggccattcaagctgaaggcaccactgggtgggctgaagaagaagaggaaccactacgttgagggtggtgatgctggtaaccgtgagaactacatcaacgaactcatcagaaggatgaactag
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| Protein seq | MASEAAKVVVPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0025480 | OsLima_04g0025480.02 | Chr04 | 32082868 | 32085303 | + | NAM | ||
| CDS seq | atgaagggtggtttctatgtcagccctgaggaaaagttgctgtttgtggtccgtatccgtggtatcaatgccatgcacccaaagaccaggaagattttgcagctcttgcgtttgaggcagatctttaatgGAgtgttcttgaaggtcaacaaagccaccattaacatgctgcgcagggttgagccatatgttgcatatgggtacccaaatttgaagagtgtccgtgaattgatctacaagaggggctatggaaagctcaacaagcaaagaatccctcttacaaacaacaaagtcatcgaggagggtttgggtaagcatgacatcatctgcattgaggatcttgttcatgagatcatgactgttggcccacatttcaaggaggccaacaacttcctctggccattcaagctgaaggcaccactgggtgggctgaagaagaagaggaaccactacgttgagggtggtgatgctggtaaccgtgagaactacatcaacgaactcatcagaaggatgaactag
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| Protein seq | MKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0025480 | OsLima_04g0025480.03 | Chr04 | 32082934 | 32085303 | + | NAM | ||
| CDS seq | atggagaaggagctggtgcaacttaagcgtgaggctcggatgaagggtggtttctatgtcagccctgaggaaaagttgctgtttgtggtccgtatccgtggtatcaatgccatgcacccaaagaccaggaagattttgcagctcttgcgtttgaggcagatctttaatgGAgtgttcttgaaggtcaacaaagccaccattaacatgctgcgcagggttgagccatatgttgcatatgggtacccaaatttgaagagtgtccgtgaattgatctacaagaggggctatggaaagctcaacaagcaaagaatccctcttacaaacaacaaagtcatcgaggagggtttgggtaagcatgacatcatctgcattgaggatcttgttcatgagatcatgactgttggcccacatttcaaggaggccaacaacttcctctggccattcaagctgaaggcaccactgggtgggctgaagaagaagaggaaccactacgttgagggtggtgatgctggtaaccgtgagaactacatcaacgaactcatcagaaggatgaactag
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| Protein seq | MEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 32083084 | 32083957 | + | OsLima_04g0025480.02 | OsLima_04g0025480.02,OsLima_04g0025480.03 | All |
| RI | Chr04 | 32083084 | 32083957 | + | OsLima_04g0025480.02 | OsLima_04g0025480.02,OsLima_04g0025480.01 | All |
| A5 | Chr04 | 32083263 | 32083860 | + | OsLima_04g0025480.03 | OsLima_04g0025480.01,OsLima_04g0025480.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.505701 | 2.161284 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0605900 | RBH | 12.849179 | 10.836002 | 48.977760 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51630 | RBH | 7.449057 | 6.735010 | 11.704961 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0605900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025740 | RBH | 3.883803 | 42.029057 | 31.787447 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026530 | RBH | 1.460153 | 46.285816 | 17.048265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026270 | RBH | 11.398686 | 97.859932 | 52.842609 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025980 | RBH | 0.992663 | 8.740273 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026220 | RBH | 50.271610 | 235.434494 | 77.088699 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0482800 | RBH | 63.4281405 | 67.0331805 | 55.9259545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024990 | RBH | 3.835445 | 15.613694 | 5.862455 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0486600 | RBH | 65.659977 | 37.350695 | 123.431995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007450 | RBH | 1.697417 | 3.232885 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025290 | RBH | 2.951929 | 193.740814 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025360 | RBH | 37.436390 | 135.973099 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025780 | RBH | 6.891232 | 16.206413 | 9.400323 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025930 | RBH | 1.602707 | 77.401382 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025210 | RBH | 2.663355 | 108.247513 | 17.775688 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025100 | RBH | 10.035162 | 133.249435 | 56.576771 |
