Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0024950 | OGI:04089610 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:31733576-31736128 | ||||||||
| Gene Symbol | WAK50, OsWAK50 | ||||||||||
| DNA seq | ctaccatgggaggtccattgatagaagtggactgctctccatgcatttatccgaggcactgtccctgtggtacaacttcagcggctcaatgttactcattttttcctggccgctctcctcttgaagcaactgcatctcttggcaatcttcagcagattgctgctccataagctctctcaaagccttttcacttttcagggacaggtgttgtttcattaaccttctgagcgcttcaagttcaattGCtacttctaccatccttggcctctcttcccctttaagcttcaaacacttcagaatcaaatgcgacaccacattaacatgcctcattccagcttccttcaccacgacgcagtccacaatctcctgtagtcggttctgctgggcaagcgccgtgaaatgtgaagctagatttatcccttcctcttgcctatgataagatatcggtttttgtctagttaatagttcaacaagaaccacaccgaagctatatacatcgctcttgtcagttagctggcttgtgtaaaagtactcagggtccaagtatcctaatgttccttggactaaggttgttacatgcgtctgattggaagggactagccttgaagcgccaaagtctgataccttcgcggtatagttctcatcaatcagtatattggcagacttgacatcacgatggatgatcggcacctttcttgccaagtgaagatttgtaagagctgatgcagtttcagttgctatcctaagacgatgctcccatgaaattggtaccaaatttgtattatgaagatggtggaacagagctccattcgatataaattcataaaccagtaagggcacttcagtttcaagacaacaacccaatatcttgaccacaTttttgtgatcaatctgtgaaagaactatcaactcgttgataaattgctccatttggctctgatccacaagctttgacttcttgatagccacaatggtttgatcagataatatccctttatacactgtaCcatatccacctcgaccaacaatacggtcatcgctgaagttgtttgttgcatcttcgagctcactggtggtgaatatccttgcaggtgcttggtgggtgaaaatCTGctgctgcaataacaaaccaccattttgcaagaagtatcgttgtttctgctttgcaagtctcctcttcttcactatccagtaagtccaaaagccaagaacaatgagaacagccatcaaaccaaggcttccacctgacatgggTATttgaatcttgaagttactactacttcatgtagtaatcaattgtttgttctggttgataaaatttcgaaaaagagagaattagtattaaagattgcaagagacttgcctacagtagacaacattgttgtatctcttttacacccagtgccttgcttcttgccatctcctgtcatgcccattgggcatgtacaattgtaaccaccagctatgttgatgcacttgtgggtgcatggatagaaattcccgtcgttgcattcgtcgatatcttgtagtcaaaagtaggaaacgaagcaaaaaaggatattagaataaggcatgctagccagtaatactattggcaaccaaacacatgaattgaggatttctcaccaacacatccaatgtacgggttgccagtgtaacctccagagcagttgcagcgatatccagctccatcttccacctcatagcaataactgttctccttgcacatgtaggtttcacgactgcggtttgcctccttgcagtagccaccctgtatataccagtcgagcaccatcggcagattccccaagtccttgtataggtcatgcctagagaacacatacgagtcctgctccgcgatgaacgccttgctgcaccgtgtgctgccgctgccgacgacactcgtgggtggcatcagctggtcccgtatgctggtgaactccaagtccagcttgttgagccccttgggcactgacgactggcagcagcccacaccggagcattcgccgctgatgatgcttccatttgatgcgcagaacgacacgcaccccccgctgtatctgctcatcaccgtgctgttggtgttaccgacaacatcgctgctgtttcttatcattgccatggcatcacagccaacggcggtgaacttgttttgcgtgtgggagaacatgtagtttgtggcagtgaggtcgatgattccctggctattgttatggcactgggaggagtatacggtctggccagtcacacgtacgtatccctcgagcagggagatgctgaggacgctgtagttaccaccgagcaaaatcattgggcctgtttgacgacatgatatcgcaaagcctggagttgacgttaagcttgagttggtggcaatgtggaaaggaaatgggatatcaacggagctattggggcacttgaatgggctgatctgggaagaactgctcgaggaaagcgataacaagcagaggagaagcaactgtgcaaggaccatggaggaaaccatgtgtgcttgtttatcagaacgaggaactaaacctgctgcaaagttac
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| CDS seq | atggtttcctccatggtccttgcacagttgcttctcctctgcttgttatcgctttcctcgagcagttcttcccagatcagcccattcaagtgccccaatagctccgttgatatcccatttcctttccacattgccaccaactcaagcttaacgtcaactccaggctttgcgatatcatgtcgtcaaacaggcccaatgattttgctcggtggtaactacagcgtcctcagcatctccctgctcgagggatacgtacgtgtgactggccagaccgtatactcctcccagtgccataacaatagccagggaatcatcgacctcactgccacaaactacatgttctcccacacgcaaaacaagttcaccgccgttggctgtgatgccatggcaatgataagaaacagcagcgatgttgtcggtaacaccaacagcacggtgatgagcagatacagcggggggtgcgtgtcgttctgcgcatcaaatggaagcatcatcagcggcgaatgctccggtgtgggctgctgccagtcgtcagtgcccaaggggctcaacaagctggacttggagttcaccagcatacgggaccagctgatgccacccacgagtgtcgtcggcagcggcagcacacggtgcagcaaggcgttcatcgcggagcaggactcgtatgtgttctctaggcatgacctatacaaggacttggggaatctgccgatggtgctcgactggtatatacagggtggctactgcaaggaggcaaaccgcagtcgtgaaacctacatgtgcaaggagaacagttattgctatgaggtggaagatggagctggatatcgctgcaactgctctggaggttacactggcaacccgtacattggatgtgttggtggaagccttggtttgatggctgttctcattgttcttggcttttggacttactggatagtgaagaagaggagacttgcaaagcagaaacaacgatacttcttgcaaaatggtggtttgttattgcagcagCAGattttcacccaccaagcacctgcaaggatattcaccaccagtgagctcgaagatgcaacaaacaacttcagcgatgaccgtattgttggtcgaggtggatatgGtacagtgtataaagggatattatctgatcaaaccattgtggctatcaagaagtcaaagcttgtggatcagagccaaatggagcaatttatcaacgagttgatagttctttcacagattgatcacaaaaAtgtggtcaagatattgggttgttgtcttgaaactgaagtgcccttactggtttatgaatttatatcgaatggagctctgttccaccatcttcataatacaaatttggtaccaatttcatgggagcatcgtcttaggatagcaactgaaactgcatcagctcttacaaatcttcacttggcaagaaaggtgccgatcatccatcgtgatgtcaagtctgccaatatactgattgatgagaactataccgcgaaggtatcagactttggcgcttcaaggctagtcccttccaatcagacgcatgtaacaaccttagtccaaggaacattaggatacttggaccctgagtacttttacacaagccagctaactgacaagagcgatgtatatagcttcggtgtggttcttgttgaactattaactagacaaaaaccgatatcttatcataggcaagaggaagggataaatctagcttcacatttcacggcgcttgcccagcagaaccgactacaggagattgtggactgcgtcgtggtgaaggaagctggaatgaggcatgttaatgtggtgtcgcatttgattctgaagtgtttgaagcttaaaggggaagagaggccaaggatggtagaagtaGCaattgaacttgaagcgctcagaaggttaatgaaacaacacctgtccctgaaaagtgaaaaggctttgagagagcttatggagcagcaatctgctgaagattgccaagagatgcagttgcttcaagaggagagcggccaggaaaaaatgagtaacattgagccgctgaagttgtaccacagggacagtgcctcggataaatgcatggagagcagtccacttctatcaatggacctcccatggtag
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| Protein seq | MVSSMVLAQLLLLCLLSLSSSSSSQISPFKCPNSSVDIPFPFHIATNSSLTSTPGFAISCRQTGPMILLGGNYSVLSISLLEGYVRVTGQTVYSSQCHNNSQGIIDLTATNYMFSHTQNKFTAVGCDAMAMIRNSSDVVGNTNSTVMSRYSGGCVSFCASNGSIISGECSGVGCCQSSVPKGLNKLDLEFTSIRDQLMPPTSVVGSGSTRCSKAFIAEQDSYVFSRHDLYKDLGNLPMVLDWYIQGGYCKEANRSRETYMCKENSYCYEVEDGAGYRCNCSGGYTGNPYIGCVGGSLGLMAVLIVLGFWTYWIVKKRRLAKQKQRYFLQNGGLLLQQQIFTHQAPARIFTTSELEDATNNFSDDRIVGRGGYGTVYKGILSDQTIVAIKKSKLVDQSQMEQFINELIVLSQIDHKNVVKILGCCLETEVPLLVYEFISNGALFHHLHNTNLVPISWEHRLRIATETASALTNLHLARKVPIIHRDVKSANILIDENYTAKVSDFGASRLVPSNQTHVTTLVQGTLGYLDPEYFYTSQLTDKSDVYSFGVVLVELLTRQKPISYHRQEEGINLASHFTALAQQNRLQEIVDCVVVKEAGMRHVNVVSHLILKCLKLKGEERPRMVEVAIELEALRRLMKQHLSLKSEKALRELMEQQSAEDCQEMQLLQEESGQEKMSNIEPLKLYHRDSASDKCMESSPLLSMDLPW |
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| Function | Wall-associated receptor kinase 1 [UniProtKB/Swiss-Prot:Q39191] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0024950 | OsLima_04g0024950.01 | Chr04 | 31733576 | 31736128 | - | NAM | ||
| CDS seq | atggtttcctccatggtccttgcacagttgcttctcctctgcttgttatcgctttcctcgagcagttcttcccagatcagcccattcaagtgccccaatagctccgttgatatcccatttcctttccacattgccaccaactcaagcttaacgtcaactccaggctttgcgatatcatgtcgtcaaacaggcccaatgattttgctcggtggtaactacagcgtcctcagcatctccctgctcgagggatacgtacgtgtgactggccagaccgtatactcctcccagtgccataacaatagccagggaatcatcgacctcactgccacaaactacatgttctcccacacgcaaaacaagttcaccgccgttggctgtgatgccatggcaatgataagaaacagcagcgatgttgtcggtaacaccaacagcacggtgatgagcagatacagcggggggtgcgtgtcgttctgcgcatcaaatggaagcatcatcagcggcgaatgctccggtgtgggctgctgccagtcgtcagtgcccaaggggctcaacaagctggacttggagttcaccagcatacgggaccagctgatgccacccacgagtgtcgtcggcagcggcagcacacggtgcagcaaggcgttcatcgcggagcaggactcgtatgtgttctctaggcatgacctatacaaggacttggggaatctgccgatggtgctcgactggtatatacagggtggctactgcaaggaggcaaaccgcagtcgtgaaacctacatgtgcaaggagaacagttattgctatgaggtggaagatggagctggatatcgctgcaactgctctggaggttacactggcaacccgtacattggatgtgttggtggaagccttggtttgatggctgttctcattgttcttggcttttggacttactggatagtgaagaagaggagacttgcaaagcagaaacaacgatacttcttgcaaaatggtggtttgttattgcagcagCAGattttcacccaccaagcacctgcaaggatattcaccaccagtgagctcgaagatgcaacaaacaacttcagcgatgaccgtattgttggtcgaggtggatatgGtacagtgtataaagggatattatctgatcaaaccattgtggctatcaagaagtcaaagcttgtggatcagagccaaatggagcaatttatcaacgagttgatagttctttcacagattgatcacaaaaAtgtggtcaagatattgggttgttgtcttgaaactgaagtgcccttactggtttatgaatttatatcgaatggagctctgttccaccatcttcataatacaaatttggtaccaatttcatgggagcatcgtcttaggatagcaactgaaactgcatcagctcttacaaatcttcacttggcaagaaaggtgccgatcatccatcgtgatgtcaagtctgccaatatactgattgatgagaactataccgcgaaggtatcagactttggcgcttcaaggctagtcccttccaatcagacgcatgtaacaaccttagtccaaggaacattaggatacttggaccctgagtacttttacacaagccagctaactgacaagagcgatgtatatagcttcggtgtggttcttgttgaactattaactagacaaaaaccgatatcttatcataggcaagaggaagggataaatctagcttcacatttcacggcgcttgcccagcagaaccgactacaggagattgtggactgcgtcgtggtgaaggaagctggaatgaggcatgttaatgtggtgtcgcatttgattctgaagtgtttgaagcttaaaggggaagagaggccaaggatggtagaagtaGCaattgaacttgaagcgctcagaaggttaatgaaacaacacctgtccctgaaaagtgaaaaggctttgagagagcttatggagcagcaatctgctgaagattgccaagagatgcagttgcttcaagaggagagcggccaggaaaaaatgagtaacattgagccgctgaagttgtaccacagggacagtgcctcggataaatgcatggagagcagtccacttctatcaatggacctcccatggtag
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| Protein seq | MVSSMVLAQLLLLCLLSLSSSSSSQISPFKCPNSSVDIPFPFHIATNSSLTSTPGFAISCRQTGPMILLGGNYSVLSISLLEGYVRVTGQTVYSSQCHNNSQGIIDLTATNYMFSHTQNKFTAVGCDAMAMIRNSSDVVGNTNSTVMSRYSGGCVSFCASNGSIISGECSGVGCCQSSVPKGLNKLDLEFTSIRDQLMPPTSVVGSGSTRCSKAFIAEQDSYVFSRHDLYKDLGNLPMVLDWYIQGGYCKEANRSRETYMCKENSYCYEVEDGAGYRCNCSGGYTGNPYIGCVGGSLGLMAVLIVLGFWTYWIVKKRRLAKQKQRYFLQNGGLLLQQQIFTHQAPARIFTTSELEDATNNFSDDRIVGRGGYGTVYKGILSDQTIVAIKKSKLVDQSQMEQFINELIVLSQIDHKNVVKILGCCLETEVPLLVYEFISNGALFHHLHNTNLVPISWEHRLRIATETASALTNLHLARKVPIIHRDVKSANILIDENYTAKVSDFGASRLVPSNQTHVTTLVQGTLGYLDPEYFYTSQLTDKSDVYSFGVVLVELLTRQKPISYHRQEEGINLASHFTALAQQNRLQEIVDCVVVKEAGMRHVNVVSHLILKCLKLKGEERPRMVEVAIELEALRRLMKQHLSLKSEKALRELMEQQSAEDCQEMQLLQEESGQEKMSNIEPLKLYHRDSASDKCMESSPLLSMDLPW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.253217 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0598900 | RBH | 0.606401 | 0.208212 | 0.496229 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51040 | RBH | 0.409910 | 0.279964 | 0.127686 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0598900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025250 | RBH | 0.105336 | 4.646637 | 1.740748 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026030 | RBH | 0.096886 | 0.893406 | 0.900697 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025760 | RBH | 0.680968 | 0.830622 | 2.086954 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025480 | RBH | 0.113776 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025730 | RBH | 1.387494 | 0.000000 | 1.410769 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0477500 | RBH | 0.7254435 | 0.7251935 | 0.0774495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024480 | RBH | 0.177679 | 0.0 | 0.113538 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0481300 | RBH | 1.294575 | 0.4124455 | 0.016388 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026360 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024780 | RBH | 0.348071 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024870 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025300 | RBH | 0.127074 | 0.0 | 0.106038 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025470 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024700 | RBH | 0.072217 | 0.0 | 0.163446 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024590 | RBH | 0.000000 | 0.000000 | 0.361544 |
