Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0023880 | OGI:04087390 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:30942271-30946381 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgcacggtacctcgacccggctctctgcaaacaaagaaaggaaaaaaatgtaattagttctaaccgattatacccatgctgaagttaaaggactaacaataaccatgggatgatgtgattttgccaattcttttcaatacctgaaacctgggattggtgatctggagcgagtccatttttactaaattctcagcatcatcgagctcaataacagcattgacaattgcattggataaatgtttatactcgcttgcctcgaaaaagcaacctcgatgctttgcatcattcaccactttctgccaaacagatctactgttggacaaagtcgtcccatttcctactatccacaaacagtgcctgccacaaacataagccaaataactaactaaaaggagcaattagcaaattgttaattgtaagggcaatcattacacttacttagcccttgtcagagccatatttgtccgctgcaggtttgtgagaaacccaactgaaccagctctattacttctgacagtagatatgatgatgacatcctcctccgcaccttggaaaccatccaccgattttaccttcacagagaaatcatcatacatatcgtaagtcttaccaattttctcttggatagctctaacttgagcattgtacggtgacactacaccaacagtgagcttgcttcccaaaaaaaccgattctgtaacaacaaaagatgcggggttagcaatactggtggttaagacagcatgaatatcatacatattatgttcacatatatcatttatagcaccaaagctccagaaatgcagatgatcctaccttcaaatagtctccgcacgatccacagcacagcagcaacttctatggtatttttaaggctccggccatgtttttcagttgtttcatggccaccatctacatttataaacgagtaaggtccaaacattttgcctggcaaaatgttcctcttgtagttcttgctgacaacatttggaccatctgagatcttgccatcataaaaactggcaactggaaacttgcttatctctggtcgcatcctgtactgaatgttcaggaggtgcttgttgtagcccaaggaacttaacctctcaaaaacacttcttccgaaatcagcattatcagaaatctgcaagagtaaaaacacttggttattttgaagtttaaacatgggaaaacaaagtggaataaagcattagcactagacacatactttgcttttaaccagagcaggtagctggcattcgtctccgataaaaacagcttgctttatgccaggcaactgcatgggaattaaggtctcacactcttttaactgtgcagcttcatctacaaccaacagttccagaggtttcaagcactcagacctgtcatccatggacacattgtgcaacacataagaactagaaacagtgcagagaatgcattttgttctttgcaacaggtagactcgaatttctctcttgcggtcatcatcagaaaggctcaagcgatcccaatcaggaagcttcaagttgatcttcagatatcttaatattcgaacacagagtaatcttgcctttctgatctttgatttgttgcacacatccgtgtgcactgaggctagcagatctggccacttgagtggatcactgtccccatgcccttttccattcaagagatcatcgaaccataaattgtcatcattattatcattaacatttatcaatgcatggagaatatatggagaatattcaatggttcaaccacctcattcatgtactggaagctctgacgcatcatggagtttcgtggaaaatcagtgcataatatctccatgaaatagtagaaatcttccaaaagttcattgcatttgtccttgacaaattccttgagtggtagaactactgaatttggtcctttcattttcatctgaacagtgtaccacttgtattttttttgtcacaggtatctcaagaaaatctattagtgaacacaagcaatgattccatcctttcatactctcaaaacattgtgacagccgctcggtgcgagagctgagaaaaaccacagagagatcatgatcttcacctatcttcatcctcttcttgtttccaaacaaaacgatgtcgcttagatattggccactgctagcaggagactcatgaacgagcttgacaattcgagatgcaacctctaggacagcagtattagtaggggcacaagtaagtgtccggtgtcctgaatgcaacattacccagagtaaagcactgatggttttggttttacccgtcctaggaggtccccatattagtttaataggagaagagattttttctgagaccagaacacaatctgcaacagcattcagttgtgaattgttgagcatgtacttctcaagattaagatcaacggctgatctagcagcgaaccgttgagataattgggagcttgatgacatagcctcatccacttccttcacaaataaacgttgtgcaaacaattcaatcatcagaaatactactaacaagatagtgttgtttatatgcacttgggaaaatgccattagttcattaccaagtgttgacaaataagggcactgtatcatttgaatctttaaaatatatcagattcatattccaatctaaacaacatactgaagatttaacacatgtgtggtagccaagaagcatgacccgcacttcaaattccaaaaacatcactactcaagctaatttagcgcaaataggaatgccaagattgtaacttttaagtgtgtttcttactttagttgcaaaagcaacagtcagagcaataggtagttgaaactatcatgcatcaagagccaatagggtgctgaatttaatgactcaaacaataagacaattagacatgacaaatagatatgctattatgctctacaaggaattggccctagctctttggttggAGGGTGTGGTTTACACCCCCCCCCCCCACTACTATTTAACTAGAATTTGGGTGCCTATTCCTTCTTAATTAAATCGAGACCAGGCTAAACCACAGTGTCCCACATTTTTTTATTATGCGTCTACAAACTGAAAATACCTTTGACTTGTACCGCCAGACTGTATCAAacaatatggctgtttcccttgtgaagacaatcccaaatccgatcgtatgtcttcatatttatgaggattaccgcgaacaatggctcctttggttcatttgttgaagaatcagtttccactggaagcactgatgacaatctagcaatgaagcaattgtctgggagatcatcatcgtcttcaccacctttgacaattgaacctaggatgtacgaagtcatatttcgtgtcaaatcagacacttgcttgggctttcgggaggtaaggactattatatcaccctcacatggcgcatatgtttccttggatttctcatcctttgctggatttgcaacctcaaaacagaagaacgtggtctcatcgtcatgcagcagttccttcattcgggctactgatatgaagttttggtgagaataaccatccaacgatgaaaagacatcaacatgtgtttcttcaagtaatgggtaggtaaatgagttaaagtaatttgacgatgaagtgaacgtctctgggatccttttcacctggaaagaaacaaataatcaactatctgtgactcaatactactcccgccggtcaaatatatttgaTGTtgggggtacttgaactaatactcccaatgtcaaatttatttgacaggaaggggtagaccaaaaaacgaaatgtttttagggaagataggagcttgcattaaatttcagaaacaagagtatacaatccagttacagaattctaaaactaagtaccaacttcaggagttgaaaggtaagcatgcgacgctcgtcgcccagttccccgccgccggcgccgctggccctacgcCCGccgccctcgctgcttcgtcgaccccaagtcgccgcgccgtccgcggggccatccgggccgctgccctctgcatccccgccgtcgtccaggctgctccaaagcgccttgtggtgtgaatccccccgccaccgccacccagatccgcagcttgggtctatccgggaggcgtctcccat
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| CDS seq | atgggagacgcctcccggatagacccaagctgcggatctgggtggcggtggcggggggattcacaccacaaggcgctttggagcagcctggacgacggcggggatgcagagggcagcggcccggatggccccgcggacggcgcggcgacttggggtcgacgaagcagcgagggcggCGGgcgtagggccagcggcgccggcggcggggaactgggcgacgagcgtcgcatgcttacctttcaactcctgaagttggtgaaaaggatcccagagacgttcacttcatcgtcaaattactttaactcatttacctacccattacttgaagaaacacatgttgatgtcttttcatcgttggatggttattctcaccaaaacttcatatcagtagcccgaatgaaggaactgctgcatgacgatgagaccacgttcttctgttttgaggttgcaaatccagcaaaggatgagaaatccaaggaaacatatgcgccatgtgagggtgatataatagtccttacctcccgaaagcccaagcaagtgtctgatttgacacgaaatatgacttcgtacatcctaggttcaattgtcaaaggtggtgaagacgatgatgatctcccagacaattgcttcattgctagattgtcatcagtgcttccagtggaaactgattcttcaacaaatgaaccaaaggagccattgttcgcggtaatcctcataaatatgaagacatacgatcggatttgggattgtcttcacaagggaaacagccatatttttcaactacctattgctctgactgttgcttttgcaactaaagaagtggatgaggctatgtcatcaagctcccaattatctcaacggttcgctgctagatcagccgttgatcttaatcttgagaagtacatgctcaacaattcacaactgaatgctgttgcagattgtgttctggtctcagaaaaaatctcttctcctattaaactaatatggggacctcctaggacgggacaccggacacttacttgtgcccctactaatactgctgtcctagaggttgcatctcgaattgtcaagctcgttcatgagtctcctgctagcagtggccaatatctaagcgacatcgttttgtttggaaacaagaagaggatgaagatagggcatggggacagtgatccactcaagtggccagatctgctagcctcagtgcacacggatgtgtgcaacaaatcaaagatcagaaaggcaagattactctgtgttcgaatattaagatatctgaagatcaacttgaagcttcctgattgggatcgcttgagcctttctgatgatgaccgcaagagagaaattcgagtctacctgttgcaaagaacaaaatgcattctctgcactgtttctagttcttatgtgttgcacaatgtgtccatggatgacaggtctgagtgcttgaaacctctggaactgttggttgtagatgaagctgcacagttaaaagagtgtgagaccttaattcccatgcagttgcctggcataaagcaagctgtttttatcggagacgaatgccagctacctgctctggttaaaagcaaaatttctgataatgctgatttcggaagaagtgtttttgagaggttaagttccttgggctacaacaagcacctcctgaacattcagtacaggatgcgaccagagataagcaagtttccagttgccagtttttatgatggcaagatctcagatggtccaaatgttgtcagcaagaactacaagaggaacattttgccaggcaaaatgtttggaccttactcgtttataaatgtagatggtggccatgaaacaactgaaaaacatggccggagccttaaaaataccatagaagttgctgctgtgctgtggatcgtgcggagactatttgaagaatcggtttttttgggaagcaagctcactgttggtgtagtgtcaccgtacaatgctcaagttagagctatccaagagaaaattggtaagacttacgatatgtatgatgatttctctgtaaaatcggtggatggtttccaaggtgcggaggaggatgtcatcatcatatctactgtcagaagtaatagagctggttcagttgggtttctcacaaacctgcagcggacaaatatggctctgacaagggctaagcactgtttgtggatagtaggaaatgggacgactttgtccaacagtagatctgtttggcagaaagtggtgaatgatgcaaagcatcgaggttgctttttcgaggcaagcgagtataaacatttatccaatgcaattgtcaatgctgttattgagctcgatgatgctgagaatttagtaaaaatggactcgctccagatcaccaatcccaggtttcagagagccgggtcgaggtaccgtgcatga
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| Protein seq | MGDASRIDPSCGSGWRWRGDSHHKALWSSLDDGGDAEGSGPDGPADGAATWGRRSSEGGGRRASGAGGGELGDERRMLTFQLLKLVKRIPETFTSSSNYFNSFTYPLLEETHVDVFSSLDGYSHQNFISVARMKELLHDDETTFFCFEVANPAKDEKSKETYAPCEGDIIVLTSRKPKQVSDLTRNMTSYILGSIVKGGEDDDDLPDNCFIARLSSVLPVETDSSTNEPKEPLFAVILINMKTYDRIWDCLHKGNSHIFQLPIALTVAFATKEVDEAMSSSSQLSQRFAARSAVDLNLEKYMLNNSQLNAVADCVLVSEKISSPIKLIWGPPRTGHRTLTCAPTNTAVLEVASRIVKLVHESPASSGQYLSDIVLFGNKKRMKIGHGDSDPLKWPDLLASVHTDVCNKSKIRKARLLCVRILRYLKINLKLPDWDRLSLSDDDRKREIRVYLLQRTKCILCTVSSSYVLHNVSMDDRSECLKPLELLVVDEAAQLKECETLIPMQLPGIKQAVFIGDECQLPALVKSKISDNADFGRSVFERLSSLGYNKHLLNIQYRMRPEISKFPVASFYDGKISDGPNVVSKNYKRNILPGKMFGPYSFINVDGGHETTEKHGRSLKNTIEVAAVLWIVRRLFEESVFLGSKLTVGVVSPYNAQVRAIQEKIGKTYDMYDDFSVKSVDGFQGAEEDVIIISTVRSNRAGSVGFLTNLQRTNMALTRAKHCLWIVGNGTTLSNSRSVWQKVVNDAKHRGCFFEASEYKHLSNAIVNAVIELDDAENLVKMDSLQITNPRFQRAGSRYRA |
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| Function | Probable helicase MAGATAMA 3 [UniProtKB/Swiss-Prot:B6SFA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0023880 | OsLima_04g0023880.01 | Chr04 | 30942271 | 30946381 | - | NAM | ||
| CDS seq | atgggagacgcctcccggatagacccaagctgcggatctgggtggcggtggcggggggattcacaccacaaggcgctttggagcagcctggacgacggcggggatgcagagggcagcggcccggatggccccgcggacggcgcggcgacttggggtcgacgaagcagcgagggcggCGGgcgtagggccagcggcgccggcggcggggaactgggcgacgagcgtcgcatgcttacctttcaactcctgaagttggtgaaaaggatcccagagacgttcacttcatcgtcaaattactttaactcatttacctacccattacttgaagaaacacatgttgatgtcttttcatcgttggatggttattctcaccaaaacttcatatcagtagcccgaatgaaggaactgctgcatgacgatgagaccacgttcttctgttttgaggttgcaaatccagcaaaggatgagaaatccaaggaaacatatgcgccatgtgagggtgatataatagtccttacctcccgaaagcccaagcaagtgtctgatttgacacgaaatatgacttcgtacatcctaggttcaattgtcaaaggtggtgaagacgatgatgatctcccagacaattgcttcattgctagattgtcatcagtgcttccagtggaaactgattcttcaacaaatgaaccaaaggagccattgttcgcggtaatcctcataaatatgaagacatacgatcggatttgggattgtcttcacaagggaaacagccatatttttcaactacctattgctctgactgttgcttttgcaactaaagaagtggatgaggctatgtcatcaagctcccaattatctcaacggttcgctgctagatcagccgttgatcttaatcttgagaagtacatgctcaacaattcacaactgaatgctgttgcagattgtgttctggtctcagaaaaaatctcttctcctattaaactaatatggggacctcctaggacgggacaccggacacttacttgtgcccctactaatactgctgtcctagaggttgcatctcgaattgtcaagctcgttcatgagtctcctgctagcagtggccaatatctaagcgacatcgttttgtttggaaacaagaagaggatgaagatagggcatggggacagtgatccactcaagtggccagatctgctagcctcagtgcacacggatgtgtgcaacaaatcaaagatcagaaaggcaagattactctgtgttcgaatattaagatatctgaagatcaacttgaagcttcctgattgggatcgcttgagcctttctgatgatgaccgcaagagagaaattcgagtctacctgttgcaaagaacaaaatgcattctctgcactgtttctagttcttatgtgttgcacaatgtgtccatggatgacaggtctgagtgcttgaaacctctggaactgttggttgtagatgaagctgcacagttaaaagagtgtgagaccttaattcccatgcagttgcctggcataaagcaagctgtttttatcggagacgaatgccagctacctgctctggttaaaagcaaaatttctgataatgctgatttcggaagaagtgtttttgagaggttaagttccttgggctacaacaagcacctcctgaacattcagtacaggatgcgaccagagataagcaagtttccagttgccagtttttatgatggcaagatctcagatggtccaaatgttgtcagcaagaactacaagaggaacattttgccaggcaaaatgtttggaccttactcgtttataaatgtagatggtggccatgaaacaactgaaaaacatggccggagccttaaaaataccatagaagttgctgctgtgctgtggatcgtgcggagactatttgaagaatcggtttttttgggaagcaagctcactgttggtgtagtgtcaccgtacaatgctcaagttagagctatccaagagaaaattggtaagacttacgatatgtatgatgatttctctgtaaaatcggtggatggtttccaaggtgcggaggaggatgtcatcatcatatctactgtcagaagtaatagagctggttcagttgggtttctcacaaacctgcagcggacaaatatggctctgacaagggctaagcactgtttgtggatagtaggaaatgggacgactttgtccaacagtagatctgtttggcagaaagtggtgaatgatgcaaagcatcgaggttgctttttcgaggcaagcgagtataaacatttatccaatgcaattgtcaatgctgttattgagctcgatgatgctgagaatttagtaaaaatggactcgctccagatcaccaatcccaggtttcagagagccgggtcgaggtaccgtgcatga
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| Protein seq | MGDASRIDPSCGSGWRWRGDSHHKALWSSLDDGGDAEGSGPDGPADGAATWGRRSSEGGGRRASGAGGGELGDERRMLTFQLLKLVKRIPETFTSSSNYFNSFTYPLLEETHVDVFSSLDGYSHQNFISVARMKELLHDDETTFFCFEVANPAKDEKSKETYAPCEGDIIVLTSRKPKQVSDLTRNMTSYILGSIVKGGEDDDDLPDNCFIARLSSVLPVETDSSTNEPKEPLFAVILINMKTYDRIWDCLHKGNSHIFQLPIALTVAFATKEVDEAMSSSSQLSQRFAARSAVDLNLEKYMLNNSQLNAVADCVLVSEKISSPIKLIWGPPRTGHRTLTCAPTNTAVLEVASRIVKLVHESPASSGQYLSDIVLFGNKKRMKIGHGDSDPLKWPDLLASVHTDVCNKSKIRKARLLCVRILRYLKINLKLPDWDRLSLSDDDRKREIRVYLLQRTKCILCTVSSSYVLHNVSMDDRSECLKPLELLVVDEAAQLKECETLIPMQLPGIKQAVFIGDECQLPALVKSKISDNADFGRSVFERLSSLGYNKHLLNIQYRMRPEISKFPVASFYDGKISDGPNVVSKNYKRNILPGKMFGPYSFINVDGGHETTEKHGRSLKNTIEVAAVLWIVRRLFEESVFLGSKLTVGVVSPYNAQVRAIQEKIGKTYDMYDDFSVKSVDGFQGAEEDVIIISTVRSNRAGSVGFLTNLQRTNMALTRAKHCLWIVGNGTTLSNSRSVWQKVVNDAKHRGCFFEASEYKHLSNAIVNAVIELDDAENLVKMDSLQITNPRFQRAGSRYRA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0582000 | RBH | 0.0 | 0.0 | 0.248631 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49270 | RBH | 0.0 | 0.0 | 0.062902 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0582000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024230 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024970 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024670 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024610 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0464400 | RBH | 0.8395625 | 2.303511 | 5.788065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023420 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0467300 | SBH | 0.6047415 | 3.10987 | 3.3942335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023720 | SBH | 0.036331 | 0.882023 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023860 | SBH | 0.0 | 1.166108 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024250 | SBH | 0.000000 | 0.153508 | 0.068781 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024450 | RBH | 0.011691 | 0.137308 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023610 | SBH | 0.093178 | 0.000000 | 0.111403 |
