Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0023210 | OGI:04085300 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:30267371-30270061 | ||||||||
| Gene Symbol | OsATL53 | ||||||||||
| DNA seq | gaatgatttaagggataagggagggacctaagtgaaaaaaggcggcagtagcggtgaaaaaatggcgaccaaagtgcacgcccgccgcctctagcgccgaccgcctcccgttccccttccccactccgtcccggcagctacctccgctttccaccacgccggccgatccgcctccccaaccctatcgccggcaggcgcgccacgccaggttccgggctcggagacaccgcacgctccgcccgatgggcacccccgggccggagctcgccgctctcgcgattcgccgcagcggcggccgcctgttcgagcggtagggagggactcgtctccccgcctctccttgtcgtggactcgtggtagcgggggtgggaggagccagagaggctGggggcagggaGggaggatgctggggtcgggcctgaatctcgtcagcgcggcgctcggcttcggcatgaccgccgcctttgtcgcgttcgtctgcgcgcggttcgtctgctgccgcgcccgccgcgcggacgctagcgcgtcacggccacacccctcgccggtggacttcgacgcggacttCccctcggatttcgatcgcccggtatgtggcaccttgtTCtccctcaataatagtcttccgctgcgattttagtccacAaactggagtagtaatttgctcgtgttaacggtatcactgctacctgcagtggcatggcacgtgcacaaaacgactggagtatatctgttttcattttctgtgttcatggacagtacttttctactttcaagcagaaatacttgtcatgtgtcatgctcaatttatgatggccttactgtgtagtaaatcaaatggggaataagtacaggcactagtagtacactagcctgctttaccttgggcgtgcaatgttgttaaagtggctttggattgcttactggggttccttaagagattcattaagaatttgagatgttaccgtctaatcTttttaatcattttaatattgtttatggttttatgttccctgtacaaataacaattttatttaagcgactaaaggaggaaggcacatcaacacatgtatgctagacttgtttctgaatttctcttctttgttggtttaaattgggttatTCtctcttttaaaatgaaaaatgtgttagtcttttggatcatttcctatatatacaaaataagctgaaaaatatcaattcaataataatagtataatgtattttcactgaagttcgtatagcgccaactgcacaaagcatctttctttcagagttagtggtcttgtagtagttcctcttagctagtactactacatataaaacagtgcattgaatctatagtactatgttgagcgtttgagctcatatggaaattattagtgaatagatcaactgaatcaatagtcaacacgccctataaattcattttggacttgaaagtaaatgcaagaTTtttttttattgttcagatagagcattcccgcagtgggttggaaccattggctgttgctgcaattcctacaatgaagtataactgtgaagctttccattcggaagatgacacccagtaagtacaatcgtcaccatctgaagtaaatattattgaacttctttatagtgtggttcaatgcatataatctgcttctaacatgctattgttagaaaaactatggttattgaaaaatattagcacaatgagttaaaaggtttgttagactttgtggaattcatatccttgtggaaatgttggaatttagatgtgcttaatcgaagcatatttaatcaatatgtacaatgggtagagatattatagattatcaatcatacttcttgttgatgagataacataggacaacacacctgtagcttttatcagtttttttgcagtaccttgggccttcgccaccagtccagatttaataggaaccaatttggcagagttgagtcttatctcattacgttgtcaacctgggttcagtttagtcttacttcaagtaaactttctatcattatcatctctgcttgcagccatacctcttaaatttatgatgcatccataattttttttttttgtaatatataggatgttttgttgtaacaggtgctccatatgtttaagtgaatacaaggagaaggacattctaagaattgtacctatttgtcatcataactttcacctttactgcttagatgcatggttgctgaagcagactacttgcccaatatgccggatctcattgaaagaactgcctgatggaaaatcgaccgtatcctctgctcctaccatgtctcaaccccccaccctccctgagagttctgttaatccaacatctcatttcctcccagttcatcaagaacacagaagccaccaggatggcccagatatgccagaatctgtagaggtggttattgaaatccgacagtgactacggcggaatagtgcaagacaagaatttgcagtttaaattctttgtacgcccttcattgcattgtttgtcgcagtttcaaaatgtttgaagtcaaaattatatgtggtccctttgcaagttgtagactagagaagtcagtcatacaatccacattatcatatgttctttttaatatatgttgtatattgcaagctaagtaaaaataccgataagatctactgatataggagtagagcttatttactgttgagtccctaat
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| CDS seq | atgctggggtcgggcctgaatctcgtcagcgcggcgctcggcttcggcatgaccgccgcctttgtcgcgttcgtctgcgcgcggttcgtctgctgccgcgcccgccgcgcggacgctagcgcgtcacggccacacccctcgccggtggacttcgacgcggacttCccctcggatttcgatcgcccgatagagcattcccgcagtgggttggaaccattggctgttgctgcaattcctacaatgaagtataactgtgaagctttccattcggaagatgacacccagtgctccatatgtttaagtgaatacaaggagaaggacattctaagaattgtacctatttgtcatcataactttcacctttactgcttagatgcatggttgctgaagcagactacttgcccaatatgccggatctcattgaaagaactgcctgatggaaaatcgaccgtatcctctgctcctaccatgtctcaaccccccaccctccctgagagttctgttaatccaacatctcatttcctcccagttcatcaagaacacagaagccaccaggatggcccagatatgccagaatctgtagaggtggttattgaaatccgacagtga
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| Protein seq | MLGSGLNLVSAALGFGMTAAFVAFVCARFVCCRARRADASASRPHPSPVDFDADFPSDFDRPIEHSRSGLEPLAVAAIPTMKYNCEAFHSEDDTQCSICLSEYKEKDILRIVPICHHNFHLYCLDAWLLKQTTCPICRISLKELPDGKSTVSSAPTMSQPPTLPESSVNPTSHFLPVHQEHRSHQDGPDMPESVEVVIEIRQ |
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| Function | E3 ubiquitin-protein ligase ATL41 [UniProtKB/Swiss-Prot:Q9SLC3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0023210 | OsLima_04g0023210.01 | Chr04 | 30267371 | 30270061 | + | NAM | ||
| CDS seq | atgctggggtcgggcctgaatctcgtcagcgcggcgctcggcttcggcatgaccgccgcctttgtcgcgttcgtctgcgcgcggttcgtctgctgccgcgcccgccgcgcggacgctagcgcgtcacggccacacccctcgccggtggacttcgacgcggacttCccctcggatttcgatcgcccgatagagcattcccgcagtgggttggaaccattggctgttgctgcaattcctacaatgaagtataactgtgaagctttccattcggaagatgacacccagtgctccatatgtttaagtgaatacaaggagaaggacattctaagaattgtacctatttgtcatcataactttcacctttactgcttagatgcatggttgctgaagcagactacttgcccaatatgccggatctcattgaaagaactgcctgatggaaaatcgaccgtatcctctgctcctaccatgtctcaaccccccaccctccctgagagttctgttaatccaacatctcatttcctcccagttcatcaagaacacagaagccaccaggatggcccagatatgccagaatctgtagaggtggttattgaaatccgacagtga
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| Protein seq | MLGSGLNLVSAALGFGMTAAFVAFVCARFVCCRARRADASASRPHPSPVDFDADFPSDFDRPIEHSRSGLEPLAVAAIPTMKYNCEAFHSEDDTQCSICLSEYKEKDILRIVPICHHNFHLYCLDAWLLKQTTCPICRISLKELPDGKSTVSSAPTMSQPPTLPESSVNPTSHFLPVHQEHRSHQDGPDMPESVEVVIEIRQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.135867 | 0.095376 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0571800 | RBH | 1.987989 | 1.773666 | 2.697754 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g48310 | RBH | 1.294018 | 1.151749 | 0.703839 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0571800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023590 | RBH | 0.518948 | 10.298796 | 3.890155 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024320 | RBH | 0.375298 | 1.362792 | 0.551432 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024050 | RBH | 0.000000 | 13.014675 | 5.709817 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023810 | RBH | 0.331906 | 0.268504 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023940 | RBH | 4.440129 | 0.000000 | 6.578108 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0450800 | RBH | 5.471267 | 13.908563 | 7.9984465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022710 | RBH | 0.153149 | 0.127791 | 0.639383 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0454800 | RBH | 7.2874255 | 12.6634775 | 12.5471405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023040 | RBH | 0.360132 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023160 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023560 | RBH | 0.577822 | 1.680716 | 0.715686 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023760 | RBH | 0.143053 | 4.435842 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023010 | RBH | 0.246128 | 2.754599 | 2.956464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022900 | RBH | 0.742700 | 7.711997 | 0.835843 |
