Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0022740 | OGI:04084220 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:29747072-29750050 | ||||||||
| Gene Symbol | RLCK157, OsRLCK157 | ||||||||||
| DNA seq | ggAaacatcacattccacttctttgTttcagaaggtttagacaaagcaccttactgaccccccctagcagttaggccaccaacttttgggccaaccgcaatctgcaaacgtacggagataatttgggccgaaagtccaaacccagcgtatgttggggcctcgacggggctatctcactcgaggagaagggtatccgctccgcgcgccgtccgatccagacctcggccgcgacgagtggtggtgatggtggtgcccgtgcccacccctccgcgtcgggacccgaggcgacgcgtcctcccgcgacgacgcggccttgggacgcgacctgatccgctcgatctccacgagggcctggacgacctcggccatggagggccggctcctggggtccccggagaggcagcgcagcgtgagctgggccgcctgctgcgccgccctggacgggtactgcccctccaggcgcgggtccaccagccgcgccagcttccgccggtccgccaggtacggcttggcccactccacgaggctgtgctgcggcgccggcctccccgtgtccagcgcccgcatccccgtcagcatctccagcagcaccacgccgaacccgtacacgtcgctcttcacgtacaggtgccctgcataataaattgattgatacacgattcctctccggttacatttgtcacgtgaaattagcacaacattagctgtcgtgttcgtgcgtgatttacctgtggcgacgtactccggcgcggcgtagccgtaggtgcccatgacgcgggtggtgacgtggctctcgccggcggtggggccgttcttggcgagcccgaagtcggagagcttggcgttgtagtgctgcccatgtacaggAgggaggagaacgagttgagcttggcgttaatgattactcctacgtgcaggtgcagcttcgcgtgtaccacgtgcgtggcagccatggcggttttaatttttgcgcgtacatacgtagtaggagtactacgtaccgtgtcgaggaggatgttggaggccttgaagtcgcggtagatgatctgcctctccgacgagtgcaggaacgcgaggccgcgggcggcgccgatggcgatgcggagacggaggttccacgagatcggctggtaggcgctgccttctgcttgcaagcaatatgctcggtgttagttcacTttgctgtcacaataatcttacggaaaactacggttttatacacttctagtttataatcttacggttttataccgataaaTttcggcccaataaagccctgcaacatgctagcctgtttggcccgtagaaattgacacggccatgttgagcagggagagtgagaacgctattgacaaattgacccagaaatctgaatattctggtcagacccacatagccactgtgctacgcaactcagaacctattttcgttggctgtatagggggcaaacctattttcgcgacgatatgagaccacatcaatcataaaccaatccagcatcgctgtcgaccaagagaaccaaaatctgacctaaggtcaacgggttcaattaagctcgtagctggcaaagaaacataccggaaagacaagaacaaagaaccatctaccgtgacaggacagaagaagaaggagaagcaaattaaactcactcctgaagaggtgattctccaagctgcccttggccatgaactcgtacacgagcagcagctccctgtcctccacgcagtacccgatcagcctcaccaagttgggatgcgacagcctCcccaggaagtttatctcagactgcaaagagaaacgtcaccaggttaattagctcagcaagcacgagccccaaacgcagacatgcagcagccaacgtgccgatcacgacgcgccgtcccgcagctttgaggcggcgcgtagaaacaaaaaaaagtaaaatcgccacaCGcgcgcgcgcgcacacacacacagaacagcgtagttcacagcatggcgcgtgcaactactccagTttatagtatgcgcagcgagaaaggaagtggtcaagtagcttcatagtatatgaacatttcagaactgcggatgactgcctggccggccacgtgaacacgcggcatggtttctctaggaaaaaaAGaagaagaagaagaagcacacggtatggtttggaggtggaataatccagtgcaaagcttaaaccgcggctacaatcattgatgcctttctaccgatttctttaaggatcatttccggatcagcttgaatcatgcgtgtgattatgatactgtttatccgttttcgtgctgtctaaaacaagttgacgttaacaccgcgatcggtcagcgctgcagatggcgagctgtgaacgaacgaatttacctgccattcttgcaggccctgcacgctctcggggttgagcttcttgacggcgatgaccatgccggtgccgctgcgcgcggggctcatcgtcctctcgtcgacccaccccttgtacacccgcccgaacccgccctcgccgaggacgctgtccggcttgaagttcctcgtcgccgccctgagctccgcgaacgtgaagattcggaggttggggacctccaggatcctcccctccggctccgggtagagcgccccggcgacgccgacgtccgcgccgccggctgctcccaggggcaggttgctgctgctgctgctgctgcttctggtggtgatgctgctcatggacgagctcgacctcatcccggagtgatgcccggcggcgctgctcatggaggcaagcgctttgggcggtgccatgatgggactacgcctatttgctggagctgctgcttctgctgcgaggttcgaaatttgatcagaatctgtttaagaaccaagggaaaaagaaatgccacaagcatttgaatacgtaccttgccggcgtccatggtggccttgagctggtgccctcacggtcgcagcagcttcggcctcctcggagccgaagcagttccccat
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| CDS seq | atggggaactgcttcggctccgaggaggccgaagctgctgcgaccgtgagggcaccagctcaaggccaccatggacgccggcaagattctgatcaaatttcgaacctcgcagcagaagcagcagctccagcaaataggcgtagtcccatcatggcaccgcccaaagcgcttgcctccatgagcagcgccgccgggcatcactccgggatgaggtcgagctcgtccatgagcagcatcaccaccagaagcagcagcagcagcagcagcaacctgcccctgggagcagccggcggcgcggacgtcggcgtcgccggggcgctctacccggagccggaggggaggatcctggaggtccccaacctccgaatcttcacgttcgcggagctcagggcggcgacgaggaacttcaagccggacagcgtcctcggcgagggcgggttcgggcgggtgtacaaggggtgggtcgacgagaggacgatgagccccgcgcgcagcggcaccggcatggtcatcgccgtcaagaagctcaaccccgagagcgtgcagggcctgcaagaatggcagtctgagataaacttcctgggGaggctgtcgcatcccaacttggtgaggctgatcgggtactgcgtggaggacagggagctgctgctcgtgtacgagttcatggccaagggcagcttggagaatcacctcttcaggaaaggcagcgcctaccagccgatctcgtggaacctccgtctccgcatcgccatcggcgccgcccgcggcctcgcgttcctgcactcgtcggagaggcagatcatctaccgcgacttcaaggcctccaacatcctcctcgacacgcactacaacgccaagctctccgacttcgggctcgccaagaacggccccaccgccggcgagagccacgtcaccacccgcgtcatgggcacctacggctacgccgcgccggagtacgtcgccacagggcacctgtacgtgaagagcgacgtgtacgggttcggcgtggtgctgctggagatgctgacggggatgcgggcgctggacacggggaggccggcgccgcagcacagcctcgtggagtgggccaagccgtacctggcggaccggcggaagctggcgcggctggtggacccgcgcctggaggggcagtacccgtccagggcggcgcagcaggcggcccagctcacgctgcgctgcctctccggggaccccaggagccggccctccatggccgaggtcgtccaggccctcgtggagatcgagcggatcaggtcgcgtcccaaggccgcgtcgtcgcgggaggacgcgtcgcctcgggtcccgacgcggaggggtgggcacgggcaccaccatcaccaccactcgtcgcggccgaggtctggatcggacggcgcgcggagcggatacccttctcctcgagtgagatag
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| Protein seq | MGNCFGSEEAEAAATVRAPAQGHHGRRQDSDQISNLAAEAAAPANRRSPIMAPPKALASMSSAAGHHSGMRSSSSMSSITTRSSSSSSSNLPLGAAGGADVGVAGALYPEPEGRILEVPNLRIFTFAELRAATRNFKPDSVLGEGGFGRVYKGWVDERTMSPARSGTGMVIAVKKLNPESVQGLQEWQSEINFLGRLSHPNLVRLIGYCVEDRELLLVYEFMAKGSLENHLFRKGSAYQPISWNLRLRIAIGAARGLAFLHSSERQIIYRDFKASNILLDTHYNAKLSDFGLAKNGPTAGESHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGMRALDTGRPAPQHSLVEWAKPYLADRRKLARLVDPRLEGQYPSRAAQQAAQLTLRCLSGDPRSRPSMAEVVQALVEIERIRSRPKAASSREDASPRVPTRRGGHGHHHHHHSSRPRSGSDGARSGYPSPRVR |
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| Function | Probable serine/threonine-protein kinase PIX13 [UniProtKB/Swiss-Prot:Q9SII6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022740 | OsLima_04g0022740.01 | Chr04 | 29747072 | 29750050 | - | NAM | ||
| CDS seq | atggggaactgcttcggctccgaggaggccgaagctgctgcgaccgtgagggcaccagctcaaggccaccatggacgccggcaagattctgatcaaatttcgaacctcgcagcagaagcagcagctccagcaaataggcgtagtcccatcatggcaccgcccaaagcgcttgcctccatgagcagcgccgccgggcatcactccgggatgaggtcgagctcgtccatgagcagcatcaccaccagaagcagcagcagcagcagcagcaacctgcccctgggagcagccggcggcgcggacgtcggcgtcgccggggcgctctacccggagccggaggggaggatcctggaggtccccaacctccgaatcttcacgttcgcggagctcagggcggcgacgaggaacttcaagccggacagcgtcctcggcgagggcgggttcgggcgggtgtacaaggggtgggtcgacgagaggacgatgagccccgcgcgcagcggcaccggcatggtcatcgccgtcaagaagctcaaccccgagagcgtgcagggcctgcaagaatggcagtctgagataaacttcctgggGaggctgtcgcatcccaacttggtgaggctgatcgggtactgcgtggaggacagggagctgctgctcgtgtacgagttcatggccaagggcagcttggagaatcacctcttcaggaaaggcagcgcctaccagccgatctcgtggaacctccgtctccgcatcgccatcggcgccgcccgcggcctcgcgttcctgcactcgtcggagaggcagatcatctaccgcgacttcaaggcctccaacatcctcctcgacacgcactacaacgccaagctctccgacttcgggctcgccaagaacggccccaccgccggcgagagccacgtcaccacccgcgtcatgggcacctacggctacgccgcgccggagtacgtcgccacagggcacctgtacgtgaagagcgacgtgtacgggttcggcgtggtgctgctggagatgctgacggggatgcgggcgctggacacggggaggccggcgccgcagcacagcctcgtggagtgggccaagccgtacctggcggaccggcggaagctggcgcggctggtggacccgcgcctggaggggcagtacccgtccagggcggcgcagcaggcggcccagctcacgctgcgctgcctctccggggaccccaggagccggccctccatggccgaggtcgtccaggccctcgtggagatcgagcggatcaggtcgcgtcccaaggccgcgtcgtcgcgggaggacgcgtcgcctcgggtcccgacgcggaggggtgggcacgggcaccaccatcaccaccactcgtcgcggccgaggtctggatcggacggcgcgcggagcggatacccttctcctcgagtgagatag
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| Protein seq | MGNCFGSEEAEAAATVRAPAQGHHGRRQDSDQISNLAAEAAAPANRRSPIMAPPKALASMSSAAGHHSGMRSSSSMSSITTRSSSSSSSNLPLGAAGGADVGVAGALYPEPEGRILEVPNLRIFTFAELRAATRNFKPDSVLGEGGFGRVYKGWVDERTMSPARSGTGMVIAVKKLNPESVQGLQEWQSEINFLGRLSHPNLVRLIGYCVEDRELLLVYEFMAKGSLENHLFRKGSAYQPISWNLRLRIAIGAARGLAFLHSSERQIIYRDFKASNILLDTHYNAKLSDFGLAKNGPTAGESHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGMRALDTGRPAPQHSLVEWAKPYLADRRKLARLVDPRLEGQYPSRAAQQAAQLTLRCLSGDPRSRPSMAEVVQALVEIERIRSRPKAASSREDASPRVPTRRGGHGHHHHHHSSRPRSGSDGARSGYPSPRVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0563900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0563900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023080 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023810 | RBH | 0.0 | 0.673813 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023530 | RBH | 0.0 | 1.396906 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023290 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023400 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0444300 | RBH | 0.05203 | 20.7729025 | 0.5697315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022240 | RBH | 0.0 | 0.300933 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0448000 | RBH | 0.1581225 | 5.42583 | 0.191106 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022680 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023060 | RBH | 0.0 | 0.282317 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023270 | RBH | 0.0 | 5.737032 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022490 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022400 | RBH | 0.0 | 0.0 | 0.0 |
