Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0022340 | OGI:04083360 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:29439499-29444415 | ||||||||
| Gene Symbol | PL, PS, Pl, Pl1, Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1 | ||||||||||
| DNA seq | ctagcttgctatagctttccggagagcttctgtaatcatcccaggttcgacggcagcagatgaggcaaactgcatccatgcaacaataatatggccaatatcagaactccaaacagacgtatagatacagagattgatagatagatagacgatgctgcatttctgctgcgagctctacttagccgctgagatgacgaccttggcctgtatcttcagtccaaggagaccatccgatgttgatgcctgcaccgagaggacatccagggagactcccttgatcgcgtcgaacactctcgtcatcagcaattccttccactggcattgcagctcgaggagaacctccttgttgtccatgatggtgacgttcacgttgctcacacaatggcgccgctccccgtcggtgtcgtcgtcgctggccacctccggcgccggcgcctttctcttcgctcctgcagaaaccttcttcccagtgatctcacggcactttcgcctgcttcttgtttccaatggacatggcgatggttggctgctggattccagctcttccactcttttctccagctctttgaggtaggctatcgtttctgcgagaatggatgctttgtccacctgcagcacgcgacatctcgtgaattcaaatcatcttgaaattccattttggaagcactaaatagctagtactactccaattaccttgacaaatttggttctaaaaaaattactactccctccgttttataatataagtcattctagcatttcccatattcatattgatggtaatgaatctaaattcattaacattaatttgaatatagattcattaccgtcaatatgaatatggaaaatgctagaatgacttacattgtgaaacggatgaagtagtaattagtattaccttgtgaatggacgggacaactgatttgagaatcaggaacatctcgttgagcttctcccggcgccttctctctgacatgacatggTtcttgatgctgctttcttgagtcgtcatcgccgccgcgctgctgtcaccattgttcatccaggcaccggctccggcgacagctttcttcagcaacttctgtggcggctctccgctgatgagcggcacggcctgcacctcgtccgagtccgccgtcctcttccacgccacaaaactcgacggcgacggcctgcaagatccatcaatggagctaccgtctaaagcggcgacgacgacgtcgtcgacgtcagtagcttccgccgccggcgcctgatccggcgccggagaagacgtcagaactagctgaaaggacgaccagggatccgcgaccgcccagctgctactgtcgtcgtcgagagggcgcacgacgtccagctcttcgcagaggctgtagagctcgccgatgtcgtccatggtgatctgctcgaggtcgttgtcggcgttgggctcgcactcggcgacctcgccgccggctaCcgcgtgtggctcccccGggaccgtcgtcgtcgtcgcttcgacggcggcgttgccatggtcgaggtcttcgaagacgacgatgtcggcgtctcccgcctccgacgagaacgccgcgcGgggcggcgtatcccagaacgacgccgcgatacggtcgacgagagccgggtcctccgaaatctagcaaattcacatttgctaatgattgttaattcgaatatttcgaaacaatatccgtcgaaaatttgatcatggccggctaggcagggaagcacgatcgatcgagttgctgtgagagaatagcaaggagaatgcatgcgtgctgtactgctgttcatcagcagccgatcatgctgtacatgcatcaatgcatttttaggtcttgtatgtttaggcggagtaattgtaacttaccggatcagtggtcccgagctcaaggacaccatgcatgataaatggcacgcagacgattgtctgtaaaacaagttacagctgcaataagaaactgtgaaagtacacttcaatacatcagctacagcgctatagtcagctactcactccgtcccataatataagattttgagtttttgtttgcactatttgaccactcgtcttatttaaaaaaaatagatttttttacttactttattattcaaagtactttaagcacattttttctttttttatatttgcataaattttttgaataagatgagtggttaaagagtgtaagcaaaaacttaaaatcccttatattatgtgacggagggagtagtaaacttatattggctacatatattttaaaatgacgttattttgctatggagagagtagctatacgcatgcattatttcatagtatgacgcatgaaattgtaccttaatagatgcactctgtgaagtaggtagatcagcatgcagcaccatcgtcgtcatacataattaaaaacaaaaaaaaatgagtaatcgagagacgatgtggcaatAtcgcgtgaacgggagattatatacatatgaaaaggGAgaagaatataatacaaattcttaatttatagatattgccattcagagcgcaagaattaataggtactaaatggtactactcatgtagtagtaactcagtacctttgctataagcgcgcgatggaatagttttctatctgcagactgagcgtttgtcagccaaacaaattcattgcttgcgaagcttttgcctggcaacctgacacggttcatcaatatagcacaatcatatcaagatactgtaagagactggcagcaggctgcagcctgcaggttgaccagctagcaGcctcaggcagagttTAGtttccaaacttttttTAaaaaacttttaaTttttttatcacatcaaaattttcctacacaaataaacttctaactttttcatcacatcgttctaatttcaaccaaactttcaattttagcgtgaactaaacacaccctcaattcatcttccatttgagttttcatctagtaaaaaagaaaatatcggggaatttatctctcccccaatctcatttttaatttcaaacctcttaatgaacattgtggtcgtgggtcacgtctttttttaaaaaaaaaaaactggagacatgagtcttgaattcttgatcgcgttatatggtctcaataatatagtacTtgcttccttttctaatataactacatacaaaaattttgtgatattagaaaataaactactaagtacaatctactaatctaaagccgacggttatgccggcttttgattaggccatgtggcccccatggcttatcaaataaatcttggatttcatcttaaggaaaaaattacagaagatcaagaaaaatagAaaactacagaagtgTttagggataattctataagcaaatagtaccttaatagTTCttttttaaaaaaaaaaagtagtaccttaacatcacaacatccagaacattccgaTtagatgggatcaaaagaatgtacccccacatatgctggtccccttaaaacttgcgtatagaggatatacgtttgcatattGgtaagaattataccttttttctatattgttcttttttcaaattggaatatcacaaatattacatttcatatatcttttagaattgatcaataaaaataaaactaatcttgtagataaccccatAcatttaatctagctcttaagtatatgaatttcacatactgttggtctatccatgtgatcaattgacttatcttacaccacttattctaacttaactttgtggaatctgtctaactaaatgatttccaatgggtactattaccatgtgttctggtggtaaatttcattccaatattttcTtttttcattagcctctttgtttctgtttctatagtgtaaagtcttcaaatctcttaagaaaaaaaatgatcaatttatgtatctcgaacaggaccaacaataccaccacaggctataTtaattggtgtgccaaccagcacgtctgttttctagttattcctccatgaaagaaaaaccaggacaggacatcccccaactagcttaagttttttttttttacgaagggtgtagccaatgcgtgagaagtataatttctcttcagtgcctttagggattataattttctactatcatgttttatgcaatAaaaATAAAATAGGTGCAGTCTCTTCATAGTAGATTATAATTGGTAGCATATGCAAATGAAATAGTGCGCTCTGTGGAGTGAAGTTACCATACGCACCCTTGGCCGGGGCCGAAGGCGTAGGTCATGCAGACGACGTAGTACCATTCCGTGTCCCCGAGATCTTCCGGCAACAGCGCAGCGACGGGCCTCCTCGCTCGGTGGCCGCACTCGCCGGAGAGGAGAGAGTCGTAGAGCTCCCTCAGCTGCTCGCTTCTCTGCAGGACCAGCTCGTCGGCCGTGAGGTTCATGGAGTTCGTGATCTTCCTCGTCTTTATCTCGCCGTTGTAGAAGCCGTCCTTCCAAGTCAGAACTCTACAAAACAAAGTGACGAAATTATATGTACGAACTGGATTTTTTACAGCCCAATTAAGTTgtgtgtgtgtgtgcgcgcgcgcgcgcactactgtacatgcatgcgcgcacaaccgtttgtttgtcatttctcatgtatcaatcaaataattacaaaacttttttcgaaaaaaggttacagcatttacagaataatcgtctataccatcttttgtaaaatttcaagatatttatacatggtaacatggattatgtagagatgtaaagatttcttgaatttttaggtagtggaaattaaggcgtgtcatgcatgatatatatatatatggtctattaccctgggcggctggttgaaatggaccaaaatatggcatacgtccaattgatgctcctcgctgcagcagcaagctggctcctgaagttcttcccggatggcagaggggtctcttccat
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| CDS seq | atggaagagacccctctgccatccgggaagaacttcaggagccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttcaaccagccgcccaggAGTTCTGACTTGGAAGGACGGCTTCTACAACGGCGAGATAAAGACGAGGAAGATCACGAACTCCATGAACCTCACGGCCGACGAGCTGGTCCTGCAGAGAAGCGAGCAGCTGAGGGAGCTCTACGACTCTCTCCTCTCCGGCGAGTGCGGCCACCGAGCGAGGAGGCCCGTCGCTGCGCTGTTGCCGGAAGATCTCGGGGACACGGAATGGTACTACGTCGTCTGCATGACCTACGCCTTCGGCCCCGGCCAAGGGTGCGTATGgttgccaggcaaaagcttcgcaagcaatgaatttgtttggctgacaaacgctcagtctgcagatagaaaactattccatcgcgcgcttatagcaaagatttcggaggacccggctctcgtcgaccgtatcgcggcgtcgttctgggatacgccgcccCgcgcggcgttctcgtcggaggcgggagacgccgacatcgtcgtcttcgaagacctcgaccatggcaacgccgccgtcgaagcgacgacgacgacggtccCgggggagccacacgcgGtagccggcggcgaggtcgccgagtgcgagcccaacgccgacaacgacctcgagcagatcaccatggacgacatcggcgagctctacagcctctgcgaagagctggacgtcgtgcgccctctcgacgacgacagtagcagctgggcggtcgcggatccctggtcgtcctttcagctagttctgacgtcttctccggcgccggatcaggcgccggcggcggaagctactgacgtcgacgacgtcgtcgtcgccgctttagacggtagctccattgatggatcttgcaggccgtcgccgtcgagttttgtggcgtggaagaggacggcggactcggacgaggtgcaggccgtgccgctcatcagcggagagccgccacagaagttgctgaagaaagctgtcgccggagccggtgcctggatgaacaatggtgacagcagcgcggcggcgatgacgactcaagaaagcagcatcaagaAccatgtggacaaagcatccattctcgcagaaacgatagcctacctcaaagagctggagaaaagagtggaagagctggaatccagcagccaaccatcgccatgtccattggaaacaagaagcaggcgaaagtgccgtgagatcactgggaagaaggtttctgcaggagcgaagagaaaggcgccggcgccggaggtggccagcgacgacgacaccgacggggagcggcgccattgtgtgagcaacgtgaacgtcaccatcatggacaacaaggaggttctcctcgagctgcaatgccagtggaaggaattgctgatgacgagagtgttcgacgcgatcaagggagtctccctggatgtcctctcggtgcaggcatcaacatcggatggtctccttggactgaagatacaggccaaggtcgtcatctcagcggctaattctgatattggccatattattgttgcatggatgcagtttgcctcatctgctgccgtcgaacctgggatgattacagaagctctccggaaagctatagcaagctag
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| Protein seq | MEETPLPSGKNFRSQLAAAARSINWTYAIFWSISTSRPGVLTWKDGFYNGEIKTRKITNSMNLTADELVLQRSEQLRELYDSLLSGECGHRARRPVAALLPEDLGDTEWYYVVCMTYAFGPGQGCVWLPGKSFASNEFVWLTNAQSADRKLFHRALIAKISEDPALVDRIAASFWDTPPRAAFSSEAGDADIVVFEDLDHGNAAVEATTTTVPGEPHAVAGGEVAECEPNADNDLEQITMDDIGELYSLCEELDVVRPLDDDSSSWAVADPWSSFQLVLTSSPAPDQAPAAEATDVDDVVVAALDGSSIDGSCRPSPSSFVAWKRTADSDEVQAVPLISGEPPQKLLKKAVAGAGAWMNNGDSSAAAMTTQESSIKNHVDKASILAETIAYLKELEKRVEELESSSQPSPCPLETRSRRKCREITGKKVSAGAKRKAPAPEVASDDDTDGERRHCVSNVNVTIMDNKEVLLELQCQWKELLMTRVFDAIKGVSLDVLSVQASTSDGLLGLKIQAKVVISAANSDIGHIIVAWMQFASSAAVEPGMITEALRKAIAS |
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| Function | Anthocyanin regulatory Lc protein [UniProtKB/Swiss-Prot:P13526] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022340 | OsLima_04g0022340.01 | Chr04 | 29439499 | 29444415 | - | NAM | ||
| CDS seq | atggaagagacccctctgccatccgggaagaacttcaggagccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttcaaccagccgcccaggAGTTCTGACTTGGAAGGACGGCTTCTACAACGGCGAGATAAAGACGAGGAAGATCACGAACTCCATGAACCTCACGGCCGACGAGCTGGTCCTGCAGAGAAGCGAGCAGCTGAGGGAGCTCTACGACTCTCTCCTCTCCGGCGAGTGCGGCCACCGAGCGAGGAGGCCCGTCGCTGCGCTGTTGCCGGAAGATCTCGGGGACACGGAATGGTACTACGTCGTCTGCATGACCTACGCCTTCGGCCCCGGCCAAGGGTGCGTATGgttgccaggcaaaagcttcgcaagcaatgaatttgtttggctgacaaacgctcagtctgcagatagaaaactattccatcgcgcgcttatagcaaagatttcggaggacccggctctcgtcgaccgtatcgcggcgtcgttctgggatacgccgcccCgcgcggcgttctcgtcggaggcgggagacgccgacatcgtcgtcttcgaagacctcgaccatggcaacgccgccgtcgaagcgacgacgacgacggtccCgggggagccacacgcgGtagccggcggcgaggtcgccgagtgcgagcccaacgccgacaacgacctcgagcagatcaccatggacgacatcggcgagctctacagcctctgcgaagagctggacgtcgtgcgccctctcgacgacgacagtagcagctgggcggtcgcggatccctggtcgtcctttcagctagttctgacgtcttctccggcgccggatcaggcgccggcggcggaagctactgacgtcgacgacgtcgtcgtcgccgctttagacggtagctccattgatggatcttgcaggccgtcgccgtcgagttttgtggcgtggaagaggacggcggactcggacgaggtgcaggccgtgccgctcatcagcggagagccgccacagaagttgctgaagaaagctgtcgccggagccggtgcctggatgaacaatggtgacagcagcgcggcggcgatgacgactcaagaaagcagcatcaagaAccatgtggacaaagcatccattctcgcagaaacgatagcctacctcaaagagctggagaaaagagtggaagagctggaatccagcagccaaccatcgccatgtccattggaaacaagaagcaggcgaaagtgccgtgagatcactgggaagaaggtttctgcaggagcgaagagaaaggcgccggcgccggaggtggccagcgacgacgacaccgacggggagcggcgccattgtgtgagcaacgtgaacgtcaccatcatggacaacaaggaggttctcctcgagctgcaatgccagtggaaggaattgctgatgacgagagtgttcgacgcgatcaagggagtctccctggatgtcctctcggtgcaggcatcaacatcggatggtctccttggactgaagatacaggccaaggtcgtcatctcagcggctaattctgatattggccatattattgttgcatggatgcagtttgcctcatctgctgccgtcgaacctgggatgattacagaagctctccggaaagctatagcaagctag
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| Protein seq | MEETPLPSGKNFRSQLAAAARSINWTYAIFWSISTSRPGVLTWKDGFYNGEIKTRKITNSMNLTADELVLQRSEQLRELYDSLLSGECGHRARRPVAALLPEDLGDTEWYYVVCMTYAFGPGQGCVWLPGKSFASNEFVWLTNAQSADRKLFHRALIAKISEDPALVDRIAASFWDTPPRAAFSSEAGDADIVVFEDLDHGNAAVEATTTTVPGEPHAVAGGEVAECEPNADNDLEQITMDDIGELYSLCEELDVVRPLDDDSSSWAVADPWSSFQLVLTSSPAPDQAPAAEATDVDDVVVAALDGSSIDGSCRPSPSSFVAWKRTADSDEVQAVPLISGEPPQKLLKKAVAGAGAWMNNGDSSAAAMTTQESSIKNHVDKASILAETIAYLKELEKRVEELESSSQPSPCPLETRSRRKCREITGKKVSAGAKRKAPAPEVASDDDTDGERRHCVSNVNVTIMDNKEVLLELQCQWKELLMTRVFDAIKGVSLDVLSVQASTSDGLLGLKIQAKVVISAANSDIGHIIVAWMQFASSAAVEPGMITEALRKAIAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0557800 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47080 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0557800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022670 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023400 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023120 | RBH | 0.0 | 0.0 | 0.198919 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022880 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023010 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0439200 | RBH | 0.075855 | 0 | 0.0222095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021850 | RBH | 0.0 | 0.0 | 0.122286 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0441400 | RBH | 0.3757935 | 0 | 0.259456 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022680 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022090 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022010 | RBH | 0.0 | 0.0 | 0.0 |
