Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0022330 | OGI:04083340 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:29421276-29426443 | ||||||||
| Gene Symbol | PA, OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2, OsbHLH016, Kala4, OSB2, OsB2, OsS1 | ||||||||||
| DNA seq | atatcatacgtacggtacctcgtcaacaccgtatgacatccatctcagagacctcctgcccggtgatcttatacatgcatatcatatacgtacggtgtagacgaggtaccgacgaggtaccaccactgacaccgatctcatagacctccttcccggtgatcttacggcgCcttcccctgtccaatttcggttgggcgccaacgcgatggctccctgctgctggactccagctctttcactcttttctctaacactttgaggtaggttatcgtttctgcaagtatggatgccttgtcaacctgcagggacaatccacagctcgatgaataatactactccTatataactttcagtatggaacgctaagttaactaaccttgcggacggaggggagtagtgacttcagaatgaggaacatctcgttgagcttctctcggcgccttctctctgacatgacatggctcttgatgttacttcctggagtcgtcgttattgccacgctaccacgatcatcaatattactcatccatgcggtgccgccgcctacagctttcttcagcaacttctgtgactctatgcctgcagtcatcggcacggccaccaccttctccgccgggttcgctcttttccatgacacgaaacacgaggcgtgagagtatgcaacgccgttgacatcgttagccgccgccgccgccgcagccaccgtctcccgtgccgacgtcgggactagctgataagaaccgaggtccaggtccagctcctcgcagaggctgtagaactcgtcggtctccatggtgatcgtttcggggttggcgccgttggtctcgcactcagcgacgacgacgtcgcctagctcgtcttctccctggagtatgaCcatctggtgctcttcaatgaggccatcgaacacggtgtcggcatcttccgtttcgtctagagaaGgggtagaactcggtacctctaagcatatcggaaactgaagctccttcaaatatgcaacaattcggtttaccaagtttgggtcctccgaaacctgggaatataattcaatagtaatccatatatattgtgaagaactcagactataatgagtgtaagagactataatgagactagcaaaaactacatcttcaaccgctgcatgcaccctctagttttaaaaaatataagttaacatttcgatttcgtggagtgtctttgctcgtagctcagtagttcgtaaaatgtcgttttgttcattaaagttaagggtacgtCccctcattttgtacatgcaacgtagtgaagctaggatttagatacgaggaagatgaacttcacaaagcgattacaattattaaaaatatagcataaaaatatacgtaatgtttcccaaaggtacgtaatatatcgtatcaacttaaaaatagcacatgataataaaaaaggtaggtatgttgatataccgaatatatctattcatttcaatttagcctatgagtattaagcagacaatcataagcggtgatagtatcatccgagctaaaattccaaataaattgacaagcaatccaaaaaaaaactataatttagcaaaatgagaaacaaactatatacgcatcttcatgcaagtattaactaatattttagAaaaaaattgaaatttaattggagaggtgaaattatacctttgaagtgttagacacctaatgatataaaaaaatatactccattttaaaatctatgatgccattgacttttcacataatgtttgactattttttattaagaaaatatataaatttcatttattttattataacttgttttatcatcaaataaaatataattttaacttatacttttacatatttatactaaattattaaataagattaatgatcaaacgttatgcgaaaagttaacggtgtcatatattttaaaaagaaaatagtgcatggttatttttacttatatgttgataaaaggtagtatttaaaagcaaaagtaaactattGgggtgtaggaaaggaggggctggttgttactgggctgttggggaaggccaggccccatcccaccacagtggctgcgcctctattcatatataccagtaaaagattctagaaaaaatatatgatgataacattaatggtatagctagctgcacataaactttaattgtcacttgatttcttacctgcgtattatggatgcggcacatgctatatatactagtagtttgatatacacgctataaataatgagggaatcttggatgctacggaacattgcactatactagcttgtccctagcagctccctgccagcatagcaacgaaatgccccggacatggtataacatagtgagaatccattatatggcaccgagtttgtcacatgtctacgatctgccactgactttataacgttctataatataccatcaacttttacttaacttctatgatttaccattgtcatccggttagctttcattagtaatgtacaattttgtccaaatgactaaaatacccctaaaacaaaaacttctaaaatttgagcaaaaattctgaaatattatattttaaatttttggtcaaattttggatgtttccaatcttatatttataatatgatattttacaatttttatcatattttggttattttgAaaaaaaatacaatacaaacgaaggttaaactgacagttatggtaaattgtaaaagttaagcaaaatcgatagcatattatagaacgtgacaaaatcaatgacaaatcgtagacctgtgataaactcagtgacatataataggttcactctataacatataccaagcatgtgatactctgttataacatactagtatactcttatgttggtcgatcatcactaggcgattgagctagctacatatatataggtccatagtttttcgtgctgagtgatccaatgaacttaccggatcagtggttcccagctcaagcacgccactcatgaaggggatgcagacaattgtctgtAaaatgtatagatatttcagatggagtcagagatatcgacgtacacgtacagtatacatcaatttgaaaactgaaatactccgtactatgtacagtatacatcaatttgaaaactgaaatactccgtactatgtacaactgtacctacatacctgaatagacacgctcTttgcatacgatattattagtggacggagttggaccacacagagagagagagagcatgcgagttagatcatgacatgacagggagataaataacaactaaatatgatgattagatcaaggagaatgcatgaacattatcctttttttctcgggaactgaacattatattctttggaggcataagggacgatgccatgagcagctagcacagcatgggaaATatatatgtaccttcgctaagagcgcacgtagaaaggttttgctatctgcagactgagcattgcacaaccaaacagatcgattgcttgcatagcttctgccgggtaacctggcagaatgtaccccagcagatcaataacaacaacacggtaaagcaaattcttgtcaacatgggactcatgagagacattgccagtggtgaagtgacgtatctttatataggtgatctaatttatataattttttaaaataccttaaatacaataaagttaaaagtatagattgatgaaatgagtttttttttcaaaagtttatttttcacatatgtgtatatatacattgggctagaatttttttgggtggtcccgaaatcaccagaaccacccttagatccgcctatgaacattgctaggctgcagtggcgaagccaccgcccggctgcctgggcagcttcccggactcgctagtgaaaactacattaaatttcaatattaatgagtaaataaaatttttaatagcaaatactagttatatcaaaatttgtttgggcttaaaaatctttctgactgcgtcactgagcttatacccagctataagctttgtgttctctcctacggagtattattggagttcTtttttttttataaacgtattattggagttgctagcagatcaaccgacaagtgatcagtcatatgtgtagggcagatcaacggatcatctcatcatgcatgtgtgcgttggctggcagcaattagcagatgagatacgcacccttggccgggtcgaaaggcgtaggtcatgcagacaacgtagtaccattctgtgtccgcgatatcttccggcgacagtgcggcgacgggcttccttgcccggtggtcgcactcgccggacaggagagagtagtagagctccctcagttgctcgcttctcctccgcaggacgagctggtcagcggtgaggtcctctaagttggatatcttcctcgtctttacctcgccgttgtagaatccatcgttccaagtcagaactctacaggtagtgttttatacatattgtatgaattaatacgatggacatagaatgacagtgtcctacgtaatacaggaattaattaaatactctctccgttttaagttataagatgttttgactttagttaaagtcaaactgctctaagtttgattaagtttgtagaccaatatagtaatatttataatactaaattattttcatcaaattaataataatttaaTtttataataaatttattttgggttgaaaatgatattattaTttttttctataaacttggtcaagcttaaaacagcttgatttttaccaaagtcaaaacgtcttataacctgaaaatagttggagtaacatataggttcatttttgatctttaattcaaaatgaagtgaaatataattatagatgcagacctgactgatcactgatgcatgtttagttatactagtatggagtatatatggcatgcacaagtggaaactaatgatgacctatgcaactgcattcataataatgaactagagtaattcatagtctaaaaaaatgaactaattatattgTTAttaccccgggagactggttgaagtggaccaaaagatggtgtaactccaactgatgctcctcacagcagcagcaagccggctcctgaagtggttcgtccctggttgtagggcttcttcctgaactggaggagcagatgccatcaccacgatagaaatctagaacttaactgtttaatttcctg
More
|
||||||||||
| CDS seq | atggcatctgctcctccagttcaggaagaagccctacaaccagggacgaaccacttcaggagccggcttgctgctgctgtgaggagcatcagttggagttacaccatcttttggtccacttcaaccagtctcccgggagttctgacttggaacgatggattctacaacggcgaggtaaagacgaggaagatatccaacttagaggacctcaccgctgaccagctcgtcctgcggaggagaagcgagcaactgagggagctctactactctctcctgtccggcgagtgcgaccaccgggcaaggaagcccgtcgccgcactgtcgccggaagatatcgcggacacagaatggtactacgttgtctgcatgacctacgcctttcgacccggccaagggttacccggcagaagctatgcaagcaatcgatctgtttggttgtgcaatgctcagtctgcagatagcaaaacctttctacgtgcgctcttagcgaagacaattgtctgcatccccttcatgagtggcgtgcttgagctgggaaccactgatccggtttcggaggacccaaacttggtaaaccgaattgttgcatatttgaaggagcttcagtttccgatatgcttagaggtaccgagttctacccCttctctagacgaaacggaagatgccgacaccgtgttcgatggcctcattgaagagcaccagatgGtcatactccagggagaagacgagctaggcgacgtcgtcgtcgctgagtgcgagaccaacggcgccaaccccgaaacgatcaccatggagaccgacgagttctacagcctctgcgaggagctggacctggacctcggttcttatcagctagtcccgacgtcggcacgggagacggtggctgcggcggcggcggcggctaacgatgtcaacggcgttgcatactctcacgcctcgtgtttcgtgtcatggaaaagagcgaacccggcggagaaggtggtggccgtgccgatgactgcaggcatagagtcacagaagttgctgaagaaagctgtaggcggcggcaccgcatggatgagtaatattgatgatcgtggtagcgtggcaataacgacgactccaggaagtaacatcaagagccatgtcatgtcagagagaaggcgccgagagaagctcaacgagatgttcctcattctgaagtcactactcccctccgtccgcaaggttgacaaggcatccatacttgcagaaacgataacctacctcaaagtgttagagaaaagagtgaaagagctggagtccagcagcagggagccatcgcgttggcgcccaaccgaaattggacaggggaagGcgccgtaa
More
|
||||||||||
| Protein seq | MASAPPVQEEALQPGTNHFRSRLAAAVRSISWSYTIFWSTSTSLPGVLTWNDGFYNGEVKTRKISNLEDLTADQLVLRRRSEQLRELYYSLLSGECDHRARKPVAALSPEDIADTEWYYVVCMTYAFRPGQGLPGRSYASNRSVWLCNAQSADSKTFLRALLAKTIVCIPFMSGVLELGTTDPVSEDPNLVNRIVAYLKELQFPICLEVPSSTPSLDETEDADTVFDGLIEEHQMVILQGEDELGDVVVAECETNGANPETITMETDEFYSLCEELDLDLGSYQLVPTSARETVAAAAAAANDVNGVAYSHASCFVSWKRANPAEKVVAVPMTAGIESQKLLKKAVGGGTAWMSNIDDRGSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLEKRVKELESSSREPSRWRPTEIGQGKAP |
||||||||||
| Function | Anthocyanin regulatory Lc protein [UniProtKB/Swiss-Prot:P13526] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022330 | OsLima_04g0022330.01 | Chr04 | 29421276 | 29426443 | - | NAM | ||
| CDS seq | atggcatctgctcctccagttcaggaagaagccctacaaccagggacgaaccacttcaggagccggcttgctgctgctgtgaggagcatcagttggagttacaccatcttttggtccacttcaaccagtctcccgggagttctgacttggaacgatggattctacaacggcgaggtaaagacgaggaagatatccaacttagaggacctcaccgctgaccagctcgtcctgcggaggagaagcgagcaactgagggagctctactactctctcctgtccggcgagtgcgaccaccgggcaaggaagcccgtcgccgcactgtcgccggaagatatcgcggacacagaatggtactacgttgtctgcatgacctacgcctttcgacccggccaagggttacccggcagaagctatgcaagcaatcgatctgtttggttgtgcaatgctcagtctgcagatagcaaaacctttctacgtgcgctcttagcgaagacaattgtctgcatccccttcatgagtggcgtgcttgagctgggaaccactgatccggtttcggaggacccaaacttggtaaaccgaattgttgcatatttgaaggagcttcagtttccgatatgcttagaggtaccgagttctacccCttctctagacgaaacggaagatgccgacaccgtgttcgatggcctcattgaagagcaccagatgGtcatactccagggagaagacgagctaggcgacgtcgtcgtcgctgagtgcgagaccaacggcgccaaccccgaaacgatcaccatggagaccgacgagttctacagcctctgcgaggagctggacctggacctcggttcttatcagctagtcccgacgtcggcacgggagacggtggctgcggcggcggcggcggctaacgatgtcaacggcgttgcatactctcacgcctcgtgtttcgtgtcatggaaaagagcgaacccggcggagaaggtggtggccgtgccgatgactgcaggcatagagtcacagaagttgctgaagaaagctgtaggcggcggcaccgcatggatgagtaatattgatgatcgtggtagcgtggcaataacgacgactccaggaagtaacatcaagagccatgtcatgtcagagagaaggcgccgagagaagctcaacgagatgttcctcattctgaagtcactactcccctccgtccgcaaggttgacaaggcatccatacttgcagaaacgataacctacctcaaagtgttagagaaaagagtgaaagagctggagtccagcagcagggagccatcgcgttggcgcccaaccgaaattggacaggggaagGcgccgtaa
More
|
|||||||
| Protein seq | MASAPPVQEEALQPGTNHFRSRLAAAVRSISWSYTIFWSTSTSLPGVLTWNDGFYNGEVKTRKISNLEDLTADQLVLRRRSEQLRELYYSLLSGECDHRARKPVAALSPEDIADTEWYYVVCMTYAFRPGQGLPGRSYASNRSVWLCNAQSADSKTFLRALLAKTIVCIPFMSGVLELGTTDPVSEDPNLVNRIVAYLKELQFPICLEVPSSTPSLDETEDADTVFDGLIEEHQMVILQGEDELGDVVVAECETNGANPETITMETDEFYSLCEELDLDLGSYQLVPTSARETVAAAAAAANDVNGVAYSHASCFVSWKRANPAEKVVAVPMTAGIESQKLLKKAVGGGTAWMSNIDDRGSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLEKRVKELESSSREPSRWRPTEIGQGKAP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0557500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47059 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0557500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023090 | SBH | 0.0 | 0.0 | 0.761336 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022860 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023000 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0439000 | RBH | 0.0419605 | 0 | 0.150094 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021840 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0441300 | RBH | 0.01113 | 0 | 0.0908905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029580 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022670 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022070 | RBH | 0.0 | 0.0 | 1.691957 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022000 | RBH | 0.0 | 0.0 | 0.0 |
