Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0021800 | OGI:04082230 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:28983385-28984536 | ||||||||
| Gene Symbol | ERF33, OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2, OsAP2, CR250 | ||||||||||
| DNA seq | gccgcagaccgcacttccatcgatctctctcctcgccacgggccacggccttctcctaacgggagccatggaagcagacgcgagccatacacccaccacctcctcctccgtctccgtctccttctcctcctcgtcgctgtccacttcctcctccacctcctccctcgtcgacaatggcgcgcaagaccggcccaagagctccaagcccaaacacgccgccaagaagcgcaagagagcggccgcggaggaacctgccaatgccgcccacggcgcaggggaggataccagcagctgcagcaccgacgacaacgcggcggcgagcggcaaggcgcaggcgggcggcggcggcggcggcgtcgacagcagcagcacctgcaccgccgcctcggcgccgaggagcggcttcaagcacccgtcgtaccgcggcgtgcgccgccggagctGggggaagtgggtgtcggagatccgggagccccgcaagaagtcgcgcatctggctGggtaccttccccaccgcggagatggcggcgcgcgcccacgacgtggccgcgctcgccatcaagggccggaacgcgcacctcaacttcccggacagcgcccacgagctgccccgcccggcgtccacctccccggcagacatccaggccgccgccgccaaggctgccgccgaggtgcggtgcgaggaggagtcgtcgccgtcgtcgtcgcccaccgccgagcaacccgaggaggaagccgcctgccctgacacggtgcacgccgacggcggccaggacaatgctctcttcgacctacccgaccttcttctcgacctacgggacgggctctggtggtcgccggtgtggccggcggcactggcggccgaggagtacgacggcggcgacgccgtcgtgctcaatgagccactcttgtgggccgagtagccattttacctttctgggctcatgaataggctacaacgacaactctcaagaaagaaagAaaaaaagggaaaaaaatgttattaccgctatatttagtagttactgctattgacaaagtttagtctatgttgtgcttgattaggccatgaagcctgtgtgctttgtgtaccaacaatcaaaaagatctctctactaatagaagttaattaattcgaagcagattttttttc
More
|
||||||||||
| CDS seq | atggaagcagacgcgagccatacacccaccacctcctcctccgtctccgtctccttctcctcctcgtcgctgtccacttcctcctccacctcctccctcgtcgacaatggcgcgcaagaccggcccaagagctccaagcccaaacacgccgccaagaagcgcaagagagcggccgcggaggaacctgccaatgccgcccacggcgcaggggaggataccagcagctgcagcaccgacgacaacgcggcggcgagcggcaaggcgcaggcgggcggcggcggcggcggcgtcgacagcagcagcacctgcaccgccgcctcggcgccgaggagcggcttcaagcacccgtcgtaccgcggcgtgcgccgccggagctGggggaagtgggtgtcggagatccgggagccccgcaagaagtcgcgcatctggctGggtaccttccccaccgcggagatggcggcgcgcgcccacgacgtggccgcgctcgccatcaagggccggaacgcgcacctcaacttcccggacagcgcccacgagctgccccgcccggcgtccacctccccggcagacatccaggccgccgccgccaaggctgccgccgaggtgcggtgcgaggaggagtcgtcgccgtcgtcgtcgcccaccgccgagcaacccgaggaggaagccgcctgccctgacacggtgcacgccgacggcggccaggacaatgctctcttcgacctacccgaccttcttctcgacctacgggacgggctctggtggtcgccggtgtggccggcggcactggcggccgaggagtacgacggcggcgacgccgtcgtgctcaatgagccactcttgtgggccgagtag
More
|
||||||||||
| Protein seq | MEADASHTPTTSSSVSVSFSSSSLSTSSSTSSLVDNGAQDRPKSSKPKHAAKKRKRAAAEEPANAAHGAGEDTSSCSTDDNAAASGKAQAGGGGGGVDSSSTCTAASAPRSGFKHPSYRGVRRRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALAIKGRNAHLNFPDSAHELPRPASTSPADIQAAAAKAAAEVRCEEESSPSSSPTAEQPEEEAACPDTVHADGGQDNALFDLPDLLLDLRDGLWWSPVWPAALAAEEYDGGDAVVLNEPLLWAE |
||||||||||
| Function | Ethylene-responsive transcription factor ERF038 [UniProtKB/Swiss-Prot:Q9ZQP3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0021800 | OsLima_04g0021800.01 | Chr04 | 28983385 | 28984536 | + | NAM | ||
| CDS seq | atggaagcagacgcgagccatacacccaccacctcctcctccgtctccgtctccttctcctcctcgtcgctgtccacttcctcctccacctcctccctcgtcgacaatggcgcgcaagaccggcccaagagctccaagcccaaacacgccgccaagaagcgcaagagagcggccgcggaggaacctgccaatgccgcccacggcgcaggggaggataccagcagctgcagcaccgacgacaacgcggcggcgagcggcaaggcgcaggcgggcggcggcggcggcggcgtcgacagcagcagcacctgcaccgccgcctcggcgccgaggagcggcttcaagcacccgtcgtaccgcggcgtgcgccgccggagctGggggaagtgggtgtcggagatccgggagccccgcaagaagtcgcgcatctggctGggtaccttccccaccgcggagatggcggcgcgcgcccacgacgtggccgcgctcgccatcaagggccggaacgcgcacctcaacttcccggacagcgcccacgagctgccccgcccggcgtccacctccccggcagacatccaggccgccgccgccaaggctgccgccgaggtgcggtgcgaggaggagtcgtcgccgtcgtcgtcgcccaccgccgagcaacccgaggaggaagccgcctgccctgacacggtgcacgccgacggcggccaggacaatgctctcttcgacctacccgaccttcttctcgacctacgggacgggctctggtggtcgccggtgtggccggcggcactggcggccgaggagtacgacggcggcgacgccgtcgtgctcaatgagccactcttgtgggccgagtag
More
|
|||||||
| Protein seq | MEADASHTPTTSSSVSVSFSSSSLSTSSSTSSLVDNGAQDRPKSSKPKHAAKKRKRAAAEEPANAAHGAGEDTSSCSTDDNAAASGKAQAGGGGGGVDSSSTCTAASAPRSGFKHPSYRGVRRRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALAIKGRNAHLNFPDSAHELPRPASTSPADIQAAAAKAAAEVRCEEESSPSSSPTAEQPEEEAACPDTVHADGGQDNALFDLPDLLLDLRDGLWWSPVWPAALAAEEYDGGDAVVLNEPLLWAE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.285345 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0549700 | RBH | 0.320950 | 0.440802 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46400 | RBH | 0.217043 | 0.296476 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0549700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022110 | RBH | 0.0 | 6.728314 | 1.624308 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022850 | RBH | 0.0 | 6.496948 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022580 | RBH | 0.0 | 23.449738 | 1.743893 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022320 | RBH | 0.0 | 0.310728 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022480 | RBH | 0.0 | 17.522245 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0433700 | RBH | 1.2461825 | 4.549809 | 1.011244 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021300 | RBH | 0.0 | 0.421167 | 0.216577 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0434100 | RBH | 1.673804 | 0.801837 | 0.3044435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027460 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021630 | RBH | 0.0 | 2.242791 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021720 | RBH | 0.0 | 11.040942 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022140 | RBH | 0.0 | 0.209410 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022320 | RBH | 0.0 | 9.719865 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021550 | RBH | 0.0 | 2.280178 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021480 | RBH | 0.416883 | 10.379795 | 1.377044 |
