Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0021780 | OGI:04082220 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:28969582-28971325 | ||||||||
| Gene Symbol | OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b | ||||||||||
| DNA seq | atggcgagagcacctggtggcgttcgccgaaggagcgggaggaggggcgcgggcggcggcggcggcgccggaggcggaggcgaggcgctgcggaagggcccgtggatggcggaggaggacgaggttctgctggagcacgtccgcacccacggccccatggactggagctccattcgatccaaaggcctcttgccgcgcaccggcaagtcctgccgcctccgctgggtgaacaagctcaggccaaacctcaagaggtaagcgcgaatcccccctcttttttcgatcttctcccttccccggttcgatcagttctctcgcctccttgattttctttttctggtcaagttcttcgtgcatttgcaagttagagcggcacggcaattgcagtgttcctggttgttctcacttctcaccggcaatggcaccactggttttacggatagagagtaacattagttctgttaaaactttagaagtgtttgcttcctctaacctagcgtccagccatgcgactcgtgtttaattttctttgttactgcttcactactctggatatttgtgtgggtttcgaaacaaattaagtataggaagtaaatgtttcgtccttacatgcttaaattgaactggccagatgaatttttgcttgtaaacccactactccatgataatgtgttagtaaactctatatctgcggtctgtgcaatctttgatcgcacttgcactgaattgtgtctctgtaatgttcctatctgcttatctttgatcaaactagtcgatggaaatgttcatgtataacccaccttttcgagttctttttccctcctttaaaagcggttgcaagtttactgccgaggaagagagggtggtgatcgagttgcaggagcagttcgggaacaagtgggcgaggatcgcgacctacttgcagggcaggacggacaacgacgtgaagaatttctggagcactcggcagaagcggctcgccaggctcctccgcgggcctctccctgctgcacggcccaacaagcacaacagcggcaagggcaaagcgccctcgtcatcttctctcgactcccaaacagccacggtaatgcatgcctttcactgaaccgctgatgaatcatcatcaacgttacgaatttactgcgctcgctccactgtgaatttgagtttcttgatggaaacttgcactgatgacactgtacttaatttcttgcagttccaccagagctcggcctccctggatcaagcttcattggagggcaactccctcggctggcaatgccgcgaggctgcaccgttcatgggatatgatcaggcatgctccgggttcttcgctttcgaGgggccactgccgctgcagctactaccacccgccgacggcgaggcgagctcgtccaatgcagctcagtcggcgccaccaccgctgctgttcgaccagcctccgtaccctctgatcaacttccctggatggccggagagatacgtcgacgtcggccacgggttcgtggacgccggcgccatggatggcctcgcctaccaggagctgcttccgatggtgcagtcggttccgatgatcatgccgttctttggcatggagtgcgcgcatgacgccgtcaagcacggggccttcgacgacctcccgccgaacatgttcgacgacgctgttgatcagcccccaccgccgccgccgccgccgccgccgccatcgccatcgccatcgccgtcgcgcgacgacgtgttgtga
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| CDS seq | atggcgagagcacctggtggcgttcgccgaaggagcgggaggaggggcgcgggcggcggcggcggcgccggaggcggaggcgaggcgctgcggaagggcccgtggatggcggaggaggacgaggttctgctggagcacgtccgcacccacggccccatggactggagctccattcgatccaaaggcctcttgccgcgcaccggcaagtcctgccgcctccgctgggtgaacaagctcaggccaaacctcaagagcggttgcaagtttactgccgaggaagagagggtggtgatcgagttgcaggagcagttcgggaacaagtgggcgaggatcgcgacctacttgcagggcaggacggacaacgacgtgaagaatttctggagcactcggcagaagcggctcgccaggctcctccgcgggcctctccctgctgcacggcccaacaagcacaacagcggcaagggcaaagcgccctcgtcatcttctctcgactcccaaacagccacgttccaccagagctcggcctccctggatcaagcttcattggagggcaactccctcggctggcaatgccgcgaggctgcaccgttcatgggatatgatcaggcatgctccgggttcttcgctttcgaGgggccactgccgctgcagctactaccacccgccgacggcgaggcgagctcgtccaatgcagctcagtcggcgccaccaccgctgctgttcgaccagcctccgtaccctctgatcaacttccctggatggccggagagatacgtcgacgtcggccacgggttcgtggacgccggcgccatggatggcctcgcctaccaggagctgcttccgatggtgcagtcggttccgatgatcatgccgttctttggcatggagtgcgcgcatgacgccgtcaagcacggggccttcgacgacctcccgccgaacatgttcgacgacgctgttgatcagcccccaccgccgccgccgccgccgccgccgccatcgccatcgccatcgccgtcgcgcgacgacgtgttgtga
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| Protein seq | MARAPGGVRRRSGRRGAGGGGGAGGGGEALRKGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKSGCKFTAEEERVVIELQEQFGNKWARIATYLQGRTDNDVKNFWSTRQKRLARLLRGPLPAARPNKHNSGKGKAPSSSSLDSQTATFHQSSASLDQASLEGNSLGWQCREAAPFMGYDQACSGFFAFEGPLPLQLLPPADGEASSSNAAQSAPPPLLFDQPPYPLINFPGWPERYVDVGHGFVDAGAMDGLAYQELLPMVQSVPMIMPFFGMECAHDAVKHGAFDDLPPNMFDDAVDQPPPPPPPPPPPSPSPSPSRDDVL |
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| Function | Probable transcription factor MYB58 [UniProtKB/Swiss-Prot:Q0JB89] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0021780 | OsLima_04g0021780.01 | Chr04 | 28969582 | 28971325 | + | NAM | ||
| CDS seq | atggcgagagcacctggtggcgttcgccgaaggagcgggaggaggggcgcgggcggcggcggcggcgccggaggcggaggcgaggcgctgcggaagggcccgtggatggcggaggaggacgaggttctgctggagcacgtccgcacccacggccccatggactggagctccattcgatccaaaggcctcttgccgcgcaccggcaagtcctgccgcctccgctgggtgaacaagctcaggccaaacctcaagagcggttgcaagtttactgccgaggaagagagggtggtgatcgagttgcaggagcagttcgggaacaagtgggcgaggatcgcgacctacttgcagggcaggacggacaacgacgtgaagaatttctggagcactcggcagaagcggctcgccaggctcctccgcgggcctctccctgctgcacggcccaacaagcacaacagcggcaagggcaaagcgccctcgtcatcttctctcgactcccaaacagccacgttccaccagagctcggcctccctggatcaagcttcattggagggcaactccctcggctggcaatgccgcgaggctgcaccgttcatgggatatgatcaggcatgctccgggttcttcgctttcgaGgggccactgccgctgcagctactaccacccgccgacggcgaggcgagctcgtccaatgcagctcagtcggcgccaccaccgctgctgttcgaccagcctccgtaccctctgatcaacttccctggatggccggagagatacgtcgacgtcggccacgggttcgtggacgccggcgccatggatggcctcgcctaccaggagctgcttccgatggtgcagtcggttccgatgatcatgccgttctttggcatggagtgcgcgcatgacgccgtcaagcacggggccttcgacgacctcccgccgaacatgttcgacgacgctgttgatcagcccccaccgccgccgccgccgccgccgccgccatcgccatcgccatcgccgtcgcgcgacgacgtgttgtga
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| Protein seq | MARAPGGVRRRSGRRGAGGGGGAGGGGEALRKGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKSGCKFTAEEERVVIELQEQFGNKWARIATYLQGRTDNDVKNFWSTRQKRLARLLRGPLPAARPNKHNSGKGKAPSSSSLDSQTATFHQSSASLDQASLEGNSLGWQCREAAPFMGYDQACSGFFAFEGPLPLQLLPPADGEASSSNAAQSAPPPLLFDQPPYPLINFPGWPERYVDVGHGFVDAGAMDGLAYQELLPMVQSVPMIMPFFGMECAHDAVKHGAFDDLPPNMFDDAVDQPPPPPPPPPPPSPSPSPSRDDVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0517100 | SBH | 1.783421 | 1.523612 | 3.962170 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46384 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0517100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022830 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022550 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022300 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022460 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0433500 | RBH | 0.0073725 | 0.0611175 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021280 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0433900 | RBH | 0.010778 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026550 | SBH | 0.059386 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021700 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022120 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021530 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021460 | RBH | 0.0 | 0.0 | 0.0 |
