Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0021360 | OGI:04081490 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:28660459-28663076 | ||||||||
| Gene Symbol | RLCK155, OsRLCK155 | ||||||||||
| DNA seq | gcactctgattggtgtcagccctgagtttgaggttgcactctacacgctctgcttctttatggGAggggaagataaccgcgttgagattggcccgtacggagtaaacatcaagtgctaccgaatgggaaacagcaaaattgggtcagcatttccaattgcagataactgaattcgttccatgcctgctcctgcgtgtatgtgattccttcagctttcagtttcacgaagttattagtgtgctgttcgatttggtcgtttacacAaaagaaccacattgttcaatttgttgtcacaatgtctctactgaaaattgtattatttggattaaccatgctgtacaagttgtagtcacaaagtcctgtaatttgTttttctcaaaacccgtaacaaaaaaatatcatctcagcacaaaaaaaaaatccttcagaagtcaatcctgcattgtgattgtcaactccgacaagagaatgaacaggtcacgtcgcggcagtggcagcagcagccgccctcatgagcatgagccttctcctcgcgtgagcgctcgcgctcgcgttctCcccgagcgcagcaaggtggagcatccgccgcctcgccgccgccgcggccacggccacgtcgtcctccacgGCCgccgccgccggcgagctcgagctctcctccccggcatcatcatacacttcgccgtccagctcggcgtgccgcgtcgcccgcctcagccgctcgaccacctccgccatcgcggggcggtccttgccgtgcttcgcgaggcagccggcggcgagctcggcgacctccctggccgctctcacggagtacctcccctgcagcctcccgtccatgatccggccgaaccgcgggctcccggcggggtgccgccgcacccactcgaggagcttctgctcgtccttgggccgactcttgtcgatcgaccgccggccggcgaggatctcgtacagcacaacgccgaagctccacacgtcgctcttggtcgtgaggtgccccgtccggacgtagtccggtgccgcgtagccgtacgtccccatcacctgatccaccaaagccaaaacggattcatttctgaagaattcagaagtgatatgatccgtgttgagttgacacattttctgaactgtgatgtttgcacataccgctgtggagacatgtgtctgaccttctgatggcccttcccttgctaatccgaaatctgacagtttgggtctgaactcatcatccagcagcacatttgcagccttgaaatcacggtatatgatctgacaaacaaggaaaatcaggtgaaaatggtgtgttttctgatgaagacgcgcagtttttcggagaagatgtggattacctgaaactccaggccctcgtggaggtacagtaaCCcctcggcagcgcccagcgcgatctgcagcctgacgccccacgggaggacggggtgggatcggtcgaacaggtggtcgtccagcgtcttattcggcacgaactcgtacaccagcagccgctgcgggcctcgctccgtctgcgccgcgcagtagccgaggaggttgacgaggttggggtgctccacgacgcccagcagctgcacctcggcgagccactccttgtgcccctgcacgagcacgatacaatggagtcgtcacaaatggcggaagcggtcgagatcaaccgggagcgtgtcgtcatgtgtgtgcgtgcctggcggctgtcggggttgagcctcttgacggcgacgggggtgccgtggggcggctcgccggggaggcggaggacgccgcggtagacgcacccgaagccgccccggccgaccatgagcagcgggctgaagtcgcccgtggcgccgcggagctcgcggagagcgagctcgcggggggcgccctgcctcgcctcgtacggctccggggtgctcaccgccgaggagctcgccgacggcctcgtgctcgcccacgacgacgtgcacgtgctcggcgcggcggctggcacggacacgttcgagcacgcatcggtggaaacggcggcagcggcactcggggagggcggagccggtgccggcgccggcgccgccacctccggccgtctcttgctcctgcgcttgtcctggaagaggcacatgcagcccatttcttggaggaagaagcccggctgctaccacaaTttcaggtacttcaagaactcagaggttgcagagaaaaagatcacgcattggtgattaaaacagAgacattttctatttcttctgttgctcgacaatgacttgtctgtacttctacgtgattaaaatccaaccaggagaaggccaagagcaaagagaACacagtggaaggaagaaccaatcgatcagagaagaaaaatccagcaaagccagatttctgccagatggaagagaaatccaacagtagacagctgccgatcacaagaaactcaatggcagcagatgctcaagaggagacatgcctccaaatggccgaatcgtttgatacaacagtcatggaccatgaactgtgtactgcctaccgtgatccggctgaccggctccgaagaatcaaagtgctcaaccagtcagttctcagtcacctcccctgccaacctctttatccttcttgcttttgctcgaagc
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| CDS seq | atgggctgcatgtgcctcttccaggacaagcgcaggagcaagagacggccggaggtggcggcgccggcgccggcaccggctccgccctccccgagtgccgctgccgccgtttccaccgatgcgtgctcgaacgtgtccgtgccagccgccgcgccgagcacgtgcacgtcgtcgtgggcgagcacgaggccgtcggcgagctcctcggcggtgagcaccccggagccgtacgaggcgaggcagggcgccccccgcgagctcgctctccgcgagctccgcggcgccacgggcgacttcagcccgctgctcatggtcggccggggcggcttcgggtgcgtctaccgcggcgtcctccgcctccccggcgagccgccccacggcacccccgtcgccgtcaagaggctcaaccccgacagccgccaggcacgcacacacatgacgacacgctcccggttgatctcgaccgcttccgccatttgtgacgactccattgggcacaaggagtggctcgccgaggtgcagctgctgggcgtcgtggagcaccccaacctcgtcaacctcctcggctactgcgcggcgcagacggagcgaggcccgcagcggctgctggtgtacgagttcgtgccgaataagacgctggacgaccacctgttcgaccgatcccaccccgtcctcccgtggggcgtcaggctgcagatcgcgctgggcgctgccgaggGGttactgtacctccacgagggcctggagtttcagatcatataccgtgatttcaaggctgcaaatgtgctgctggatgatgagttcagacccaaactgtcagatttcggattagcaagggaagggccatcagaaggtcagacacatgtctccacagcggtgatggggacgtacggctacgcggcaccggactacgtccggacggggcacctcacgaccaagagcgacgtgtggagcttcggcgttgtgctgtacgagatcctcgccggccggcggtcgatcgacaagagtcggcccaaggacgagcagaagctcctcgagtgggtgcggcggcaccccgccgggagcccgcggttcggccggatcatggacgggaggctgcaggggaggtactccgtgagagcggccagggaggtcgccgagctcgccgccggctgcctcgcgaagcacggcaaggaccgccccgcgatggcggaggtggtcgagcggctgaggcgggcgacgcggcacgccgagctggacggcgaagtgtatgatgatgccggggaggagagctcgagctcgccggcggcggcGGCcgtggaggacgacgtggccgtggccgcggcggcggcgaggcggcggatgctccaccttgctgcgctcgggGagaacgcgagcgcgagcgctcacgcgaggagaaggctcatgctcatgagggcggctgctgctgccactgccgcgacgtga
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| Protein seq | MGCMCLFQDKRRSKRRPEVAAPAPAPAPPSPSAAAAVSTDACSNVSVPAAAPSTCTSSWASTRPSASSSAVSTPEPYEARQGAPRELALRELRGATGDFSPLLMVGRGGFGCVYRGVLRLPGEPPHGTPVAVKRLNPDSRQARTHMTTRSRLISTASAICDDSIGHKEWLAEVQLLGVVEHPNLVNLLGYCAAQTERGPQRLLVYEFVPNKTLDDHLFDRSHPVLPWGVRLQIALGAAEGLLYLHEGLEFQIIYRDFKAANVLLDDEFRPKLSDFGLAREGPSEGQTHVSTAVMGTYGYAAPDYVRTGHLTTKSDVWSFGVVLYEILAGRRSIDKSRPKDEQKLLEWVRRHPAGSPRFGRIMDGRLQGRYSVRAAREVAELAAGCLAKHGKDRPAMAEVVERLRRATRHAELDGEVYDDAGEESSSSPAAAAVEDDVAVAAAAARRRMLHLAALGENASASAHARRRLMLMRAAAAATAAT |
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| Function | Serine/threonine-protein kinase PCRK1 [UniProtKB/Swiss-Prot:Q9SF86] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0021360 | OsLima_04g0021360.01 | Chr04 | 28660459 | 28663076 | - | NAM | ||
| CDS seq | atgggctgcatgtgcctcttccaggacaagcgcaggagcaagagacggccggaggtggcggcgccggcgccggcaccggctccgccctccccgagtgccgctgccgccgtttccaccgatgcgtgctcgaacgtgtccgtgccagccgccgcgccgagcacgtgcacgtcgtcgtgggcgagcacgaggccgtcggcgagctcctcggcggtgagcaccccggagccgtacgaggcgaggcagggcgccccccgcgagctcgctctccgcgagctccgcggcgccacgggcgacttcagcccgctgctcatggtcggccggggcggcttcgggtgcgtctaccgcggcgtcctccgcctccccggcgagccgccccacggcacccccgtcgccgtcaagaggctcaaccccgacagccgccaggcacgcacacacatgacgacacgctcccggttgatctcgaccgcttccgccatttgtgacgactccattgggcacaaggagtggctcgccgaggtgcagctgctgggcgtcgtggagcaccccaacctcgtcaacctcctcggctactgcgcggcgcagacggagcgaggcccgcagcggctgctggtgtacgagttcgtgccgaataagacgctggacgaccacctgttcgaccgatcccaccccgtcctcccgtggggcgtcaggctgcagatcgcgctgggcgctgccgaggGGttactgtacctccacgagggcctggagtttcagatcatataccgtgatttcaaggctgcaaatgtgctgctggatgatgagttcagacccaaactgtcagatttcggattagcaagggaagggccatcagaaggtcagacacatgtctccacagcggtgatggggacgtacggctacgcggcaccggactacgtccggacggggcacctcacgaccaagagcgacgtgtggagcttcggcgttgtgctgtacgagatcctcgccggccggcggtcgatcgacaagagtcggcccaaggacgagcagaagctcctcgagtgggtgcggcggcaccccgccgggagcccgcggttcggccggatcatggacgggaggctgcaggggaggtactccgtgagagcggccagggaggtcgccgagctcgccgccggctgcctcgcgaagcacggcaaggaccgccccgcgatggcggaggtggtcgagcggctgaggcgggcgacgcggcacgccgagctggacggcgaagtgtatgatgatgccggggaggagagctcgagctcgccggcggcggcGGCcgtggaggacgacgtggccgtggccgcggcggcggcgaggcggcggatgctccaccttgctgcgctcgggGagaacgcgagcgcgagcgctcacgcgaggagaaggctcatgctcatgagggcggctgctgctgccactgccgcgacgtga
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| Protein seq | MGCMCLFQDKRRSKRRPEVAAPAPAPAPPSPSAAAAVSTDACSNVSVPAAAPSTCTSSWASTRPSASSSAVSTPEPYEARQGAPRELALRELRGATGDFSPLLMVGRGGFGCVYRGVLRLPGEPPHGTPVAVKRLNPDSRQARTHMTTRSRLISTASAICDDSIGHKEWLAEVQLLGVVEHPNLVNLLGYCAAQTERGPQRLLVYEFVPNKTLDDHLFDRSHPVLPWGVRLQIALGAAEGLLYLHEGLEFQIIYRDFKAANVLLDDEFRPKLSDFGLAREGPSEGQTHVSTAVMGTYGYAAPDYVRTGHLTTKSDVWSFGVVLYEILAGRRSIDKSRPKDEQKLLEWVRRHPAGSPRFGRIMDGRLQGRYSVRAAREVAELAAGCLAKHGKDRPAMAEVVERLRRATRHAELDGEVYDDAGEESSSSPAAAAVEDDVAVAAAAARRRMLHLAALGENASASAHARRRLMLMRAAAAATAAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0543000 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45920 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0543000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021660 | RBH | 0.000000 | 0.000000 | 0.524139 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022130 | RBH | 0.522298 | 3.521789 | 1.937177 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021870 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022060 | RBH | 0.000000 | 0.000000 | 0.467448 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0493100 | SBH | 3.2457925 | 28.794131 | 4.519752 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020880 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0429200 | RBH | 0.0290525 | 2.78765 | 0.1045315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026970 | RBH | 0.130994 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021200 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021700 | RBH | 0.000000 | 0.166874 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021140 | RBH | 0.000000 | 0.509015 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021060 | RBH | 0.000000 | 0.000000 | 0.000000 |
